Wall clock time and date at job start Tue Mar 31 2020 06:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47020 * 2 1 4 4 C 1.34779 * 119.99722 * 83.08197 * 3 2 1 5 5 O 1.21624 * 119.99692 * 183.09771 * 4 3 2 6 6 C 1.47261 * 120.00335 * 3.09311 * 4 3 2 7 7 C 1.46688 * 126.93859 * 349.92205 * 6 4 3 8 8 C 1.34489 * 106.33151 * 179.97438 * 7 6 4 9 9 N 1.36448 * 108.85423 * 0.02562 * 8 7 6 10 10 H 0.97006 * 124.84966 * 179.97438 * 9 8 7 11 11 C 1.34658 * 110.29940 * 359.97438 * 9 8 7 12 12 C 1.50706 * 125.80114 * 180.02562 * 11 9 8 13 13 C 1.46499 * 120.00120 * 263.08517 * 3 2 1 14 14 H 1.09003 * 110.64257 * 14.89505 * 13 3 2 15 15 C 1.55156 * 110.71738 * 251.56058 * 13 3 2 16 16 C 1.54902 * 101.58583 * 277.13682 * 15 13 3 17 17 N 1.47432 * 104.83004 * 322.99332 * 16 15 13 18 18 C 1.36928 * 125.64539 * 204.15861 * 17 16 15 19 19 H 1.08005 * 119.99926 * 179.97438 * 18 17 16 20 20 C 1.38815 * 120.00638 * 359.96208 * 18 17 16 21 21 N 1.31623 * 119.99613 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00529 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47181 * 89.99646 * 22 20 18 24 24 H 1.48496 * 109.47332 * 209.99760 * 22 20 18 25 25 H 1.48501 * 109.46835 * 330.00177 * 22 20 18 26 26 C 1.47016 * 108.70275 * 24.12779 * 17 16 15 27 27 H 1.08996 * 109.47230 * 300.00044 * 1 2 3 28 28 H 1.09005 * 109.47019 * 60.00130 * 1 2 3 29 29 H 1.09004 * 109.46989 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47122 * 240.00349 * 2 1 3 31 31 H 1.08996 * 109.47205 * 120.00016 * 2 1 3 32 32 H 1.07996 * 126.83633 * 359.95759 * 7 6 4 33 33 H 1.08001 * 125.57370 * 179.72788 * 8 7 6 34 34 H 1.08991 * 109.47314 * 269.98106 * 12 11 9 35 35 H 1.09000 * 109.47012 * 29.97880 * 12 11 9 36 36 H 1.09000 * 109.46370 * 149.97658 * 12 11 9 37 37 H 1.09004 * 111.00248 * 35.21419 * 15 13 3 38 38 H 1.09000 * 111.00773 * 159.06035 * 15 13 3 39 39 H 1.08991 * 110.37139 * 204.15076 * 16 15 13 40 40 H 1.09000 * 110.36445 * 81.82291 * 16 15 13 41 41 H 0.96993 * 119.99798 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.88031 * 239.52700 * 26 17 16 43 43 H 1.08997 * 109.88744 * 118.35652 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1104 2.0634 1.1588 5 8 2.4620 3.2277 1.1527 6 6 1.7852 1.3992 2.4322 7 6 1.1567 0.0851 2.6056 8 6 1.0544 -0.1130 3.9319 9 7 1.5680 0.9719 4.5807 10 1 1.6100 1.0727 5.5446 11 6 2.0083 1.8826 3.6919 12 6 2.6398 3.2090 4.0281 13 6 2.4065 2.0210 -1.2595 14 1 2.0343 1.4509 -2.1107 15 6 3.9470 2.1891 -1.3378 16 6 4.1587 3.4951 -0.5321 17 7 3.0021 4.3423 -0.8758 18 6 2.9640 5.7090 -0.8015 19 1 2.0648 6.2399 -1.0774 20 6 4.0808 6.4123 -0.3714 21 7 5.1764 5.7653 -0.0345 22 14 4.0290 8.2769 -0.2707 23 1 3.5593 8.6870 1.0770 24 1 5.3891 8.8234 -0.5085 25 1 3.0972 8.8024 -1.3007 26 6 1.8969 3.4767 -1.3123 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 0.8391 -0.5889 1.8239 33 1 0.6302 -0.9858 4.4059 34 1 1.8648 3.9717 4.1033 35 1 3.1655 3.1303 4.9797 36 1 3.3457 3.4842 3.2446 37 1 4.4561 1.3503 -0.8631 38 1 4.2749 2.3095 -2.3702 39 1 5.0871 3.9802 -0.8330 40 1 4.1694 3.2836 0.5372 41 1 5.9569 6.2567 0.2657 42 1 1.6071 3.7311 -2.3318 43 1 1.0456 3.5959 -0.6420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033799359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:41 Heat of formation + Delta-G solvation = 94.249403 kcal Electronic energy + Delta-G solvation = -25128.854860 eV Core-core repulsion = 21792.078612 eV Total energy + Delta-G solvation = -3336.776249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.14296 -39.31563 -35.93739 -35.41880 -32.34887 -31.23823 -30.57612 -29.88274 -28.66024 -27.02092 -25.92971 -24.26142 -23.20743 -22.10161 -20.89155 -19.75934 -19.56467 -17.74107 -17.13634 -16.46166 -16.03431 -15.28721 -14.84580 -14.44576 -14.34442 -14.06996 -13.66361 -13.52687 -13.08128 -12.79176 -12.49473 -12.27474 -12.11738 -12.00916 -11.89148 -11.72365 -11.35593 -11.28399 -11.19698 -10.87292 -10.70167 -10.64721 -10.53232 -9.88667 -9.74414 -9.50101 -9.25083 -8.66415 -8.53727 -8.32230 -7.86908 -7.62405 -6.34505 -5.29716 -2.64845 2.20119 2.61718 3.29622 3.57467 3.61722 3.63475 3.72994 4.22025 4.76833 5.02533 5.12248 5.15463 5.31920 5.41771 5.46530 5.61697 5.63417 5.73310 5.81211 5.82889 5.87678 5.97157 5.99345 6.00708 6.08254 6.18619 6.26529 6.41227 6.53066 6.59523 6.74169 6.81357 6.94601 6.98801 7.03430 7.17293 7.51309 7.60742 7.89909 8.13161 8.19814 8.28587 8.73277 9.27247 9.59233 10.21204 10.89950 11.73975 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017948 B = 0.006114 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.678666 B = 4578.569808 C = 5605.197709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.093 3.907 3 N -0.605 5.605 4 C 0.551 3.449 5 O -0.456 6.456 6 C -0.217 4.217 7 C -0.193 4.193 8 C -0.031 4.031 9 N -0.558 5.558 10 H 0.410 0.590 11 C 0.097 3.903 12 C -0.092 4.092 13 C 0.138 3.862 14 H 0.078 0.922 15 C -0.161 4.161 16 C 0.159 3.841 17 N -0.575 5.575 18 C -0.194 4.194 19 H 0.068 0.932 20 C -0.017 4.017 21 N -0.922 5.922 22 Si 0.905 3.095 23 H -0.294 1.294 24 H -0.294 1.294 25 H -0.285 1.285 26 C 0.142 3.858 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.106 0.894 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.038 0.962 41 H 0.244 0.756 42 H 0.016 0.984 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.995 -16.347 6.565 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.031 4.031 3 N -0.341 5.341 4 C 0.339 3.661 5 O -0.328 6.328 6 C -0.227 4.227 7 C -0.217 4.217 8 C -0.158 4.158 9 N -0.154 5.154 10 H 0.246 0.754 11 C -0.020 4.020 12 C -0.149 4.149 13 C 0.034 3.966 14 H 0.096 0.904 15 C -0.200 4.200 16 C 0.035 3.965 17 N -0.300 5.300 18 C -0.323 4.323 19 H 0.086 0.914 20 C -0.211 4.211 21 N -0.573 5.573 22 Si 0.737 3.263 23 H -0.222 1.222 24 H -0.221 1.221 25 H -0.211 1.211 26 C 0.015 3.985 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.183 0.817 33 H 0.180 0.820 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.675 -15.505 6.730 18.564 hybrid contribution -0.283 0.680 0.637 0.974 sum -7.958 -14.826 7.367 18.368 Atomic orbital electron populations 1.22403 0.96765 1.01388 1.03084 1.22007 0.93822 0.84106 1.03142 1.47613 1.66881 1.13065 1.06509 1.17433 0.79524 0.86746 0.82357 1.91168 1.41545 1.14293 1.85813 1.20418 1.12417 0.97235 0.92623 1.23022 1.05916 0.97404 0.95387 1.21731 1.07652 0.93252 0.93187 1.41588 1.49414 1.15699 1.08720 0.75389 1.20393 1.00124 0.92900 0.88535 1.20535 1.01223 0.90490 1.02653 1.22018 0.96018 0.94364 0.84202 0.90421 1.23523 0.94103 1.01360 1.01061 1.22050 0.92887 0.85706 0.95864 1.44119 1.08626 1.01093 1.76157 1.18973 0.97356 0.80663 1.35339 0.91361 1.24627 0.96540 0.97168 1.02774 1.69847 1.02855 1.32194 1.52375 0.86191 0.76334 0.86288 0.77475 1.22202 1.22100 1.21126 1.21344 0.92781 0.88472 0.95947 0.91443 0.92451 0.92236 0.91404 0.88872 0.81731 0.82050 0.90604 0.92587 0.87554 0.92749 0.92023 0.89154 0.94435 0.94487 0.96648 0.96098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 8.70 37.16 0.32 -1.64 16 2 C 0.09 1.16 5.60 -4.04 -0.02 1.14 16 3 N -0.60 -10.53 2.53 -165.34 -0.42 -10.95 16 4 C 0.55 11.08 6.69 -12.59 -0.08 11.00 16 5 O -0.46 -11.31 8.39 5.26 0.04 -11.27 16 6 C -0.22 -3.64 6.01 -103.35 -0.62 -4.26 16 7 C -0.19 -2.45 7.48 -37.50 -0.28 -2.73 16 8 C -0.03 -0.33 11.89 -16.82 -0.20 -0.53 16 9 N -0.56 -6.24 5.90 -9.10 -0.05 -6.29 16 10 H 0.41 3.18 8.96 -40.82 -0.37 2.82 16 11 C 0.10 1.48 7.17 -81.88 -0.59 0.90 16 12 C -0.09 -1.44 9.79 36.01 0.35 -1.09 16 13 C 0.14 2.62 3.66 -66.10 -0.24 2.38 16 14 H 0.08 1.24 7.95 -51.93 -0.41 0.83 16 15 C -0.16 -3.35 6.70 -24.59 -0.16 -3.52 16 16 C 0.16 4.23 4.92 -2.53 -0.01 4.22 16 17 N -0.58 -15.94 2.23 -170.08 -0.38 -16.32 16 18 C -0.19 -5.85 10.27 -15.06 -0.15 -6.00 16 19 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 20 C -0.02 -0.51 5.49 -17.43 -0.10 -0.61 16 21 N -0.92 -28.73 10.09 55.49 0.56 -28.17 16 22 Si 0.90 23.68 29.55 -169.99 -5.02 18.65 16 23 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 24 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 C 0.14 3.30 5.99 -3.07 -0.02 3.29 16 27 H 0.07 0.84 6.37 -51.93 -0.33 0.51 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.75 7.95 -51.93 -0.41 0.33 16 31 H 0.09 1.10 4.55 -51.93 -0.24 0.87 16 32 H 0.17 1.75 3.70 -52.49 -0.19 1.55 16 33 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.11 2.13 6.72 -51.93 -0.35 1.78 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.09 2.70 5.87 -51.93 -0.31 2.40 16 40 H 0.04 1.10 5.48 -51.93 -0.28 0.81 16 41 H 0.24 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.52 7.17 -51.93 -0.37 0.15 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -35.87 326.29 -8.35 -44.23 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.19 Total: 2.66 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -1.81 Total: 2.54 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.29 Total: -61.73 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.04 Total: -11.27 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.02 Total: 18.65 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.87 -8.35 -44.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033799359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.476 kcal (2) G-P(sol) polarization free energy of solvation -35.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds