Wall clock time and date at job start Tue Mar 31 2020 06:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47020 * 2 1 4 4 C 1.34779 * 119.99722 * 83.08197 * 3 2 1 5 5 O 1.21624 * 119.99692 * 183.09771 * 4 3 2 6 6 C 1.47261 * 120.00335 * 3.09311 * 4 3 2 7 7 C 1.46688 * 126.93859 * 349.92205 * 6 4 3 8 8 C 1.34489 * 106.33151 * 179.97438 * 7 6 4 9 9 N 1.36448 * 108.85423 * 0.02562 * 8 7 6 10 10 H 0.97006 * 124.84966 * 179.97438 * 9 8 7 11 11 C 1.34658 * 110.29940 * 359.97438 * 9 8 7 12 12 C 1.50706 * 125.80114 * 180.02562 * 11 9 8 13 13 C 1.46499 * 120.00120 * 263.08517 * 3 2 1 14 14 H 1.09003 * 110.64257 * 14.89505 * 13 3 2 15 15 C 1.55156 * 110.71738 * 251.56058 * 13 3 2 16 16 C 1.54902 * 101.58583 * 277.13682 * 15 13 3 17 17 N 1.47432 * 104.83004 * 322.99332 * 16 15 13 18 18 C 1.36928 * 125.64539 * 204.15861 * 17 16 15 19 19 H 1.08005 * 119.99926 * 179.97438 * 18 17 16 20 20 C 1.38815 * 120.00638 * 359.96208 * 18 17 16 21 21 N 1.31623 * 119.99613 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00529 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47181 * 89.99646 * 22 20 18 24 24 H 1.48496 * 109.47332 * 209.99760 * 22 20 18 25 25 H 1.48501 * 109.46835 * 330.00177 * 22 20 18 26 26 C 1.47016 * 108.70275 * 24.12779 * 17 16 15 27 27 H 1.08996 * 109.47230 * 300.00044 * 1 2 3 28 28 H 1.09005 * 109.47019 * 60.00130 * 1 2 3 29 29 H 1.09004 * 109.46989 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47122 * 240.00349 * 2 1 3 31 31 H 1.08996 * 109.47205 * 120.00016 * 2 1 3 32 32 H 1.07996 * 126.83633 * 359.95759 * 7 6 4 33 33 H 1.08001 * 125.57370 * 179.72788 * 8 7 6 34 34 H 1.08991 * 109.47314 * 269.98106 * 12 11 9 35 35 H 1.09000 * 109.47012 * 29.97880 * 12 11 9 36 36 H 1.09000 * 109.46370 * 149.97658 * 12 11 9 37 37 H 1.09004 * 111.00248 * 35.21419 * 15 13 3 38 38 H 1.09000 * 111.00773 * 159.06035 * 15 13 3 39 39 H 1.08991 * 110.37139 * 204.15076 * 16 15 13 40 40 H 1.09000 * 110.36445 * 81.82291 * 16 15 13 41 41 H 0.96993 * 119.99798 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.88031 * 239.52700 * 26 17 16 43 43 H 1.08997 * 109.88744 * 118.35652 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1104 2.0634 1.1588 5 8 2.4620 3.2277 1.1527 6 6 1.7852 1.3992 2.4322 7 6 1.1567 0.0851 2.6056 8 6 1.0544 -0.1130 3.9319 9 7 1.5680 0.9719 4.5807 10 1 1.6100 1.0727 5.5446 11 6 2.0083 1.8826 3.6919 12 6 2.6398 3.2090 4.0281 13 6 2.4065 2.0210 -1.2595 14 1 2.0343 1.4509 -2.1107 15 6 3.9470 2.1891 -1.3378 16 6 4.1587 3.4951 -0.5321 17 7 3.0021 4.3423 -0.8758 18 6 2.9640 5.7090 -0.8015 19 1 2.0648 6.2399 -1.0774 20 6 4.0808 6.4123 -0.3714 21 7 5.1764 5.7653 -0.0345 22 14 4.0290 8.2769 -0.2707 23 1 3.5593 8.6870 1.0770 24 1 5.3891 8.8234 -0.5085 25 1 3.0972 8.8024 -1.3007 26 6 1.8969 3.4767 -1.3123 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 0.8391 -0.5889 1.8239 33 1 0.6302 -0.9858 4.4059 34 1 1.8648 3.9717 4.1033 35 1 3.1655 3.1303 4.9797 36 1 3.3457 3.4842 3.2446 37 1 4.4561 1.3503 -0.8631 38 1 4.2749 2.3095 -2.3702 39 1 5.0871 3.9802 -0.8330 40 1 4.1694 3.2836 0.5372 41 1 5.9569 6.2567 0.2657 42 1 1.6071 3.7311 -2.3318 43 1 1.0456 3.5959 -0.6420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033799359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:41 Heat of formation + Delta-G solvation = 70.089514 kcal Electronic energy + Delta-G solvation = -25129.902512 eV Core-core repulsion = 21792.078612 eV Total energy + Delta-G solvation = -3337.823900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.22963 -40.77776 -37.72617 -36.78748 -34.31661 -32.41790 -31.99056 -31.12796 -30.47551 -28.79448 -27.14454 -26.32643 -24.43010 -23.35478 -22.03510 -21.69564 -20.99241 -19.04273 -18.67704 -18.14199 -17.49508 -16.65494 -16.55558 -16.13426 -15.58033 -15.47240 -15.38647 -15.04928 -14.40637 -13.97689 -13.84793 -13.75591 -13.59030 -13.45869 -13.31485 -13.17949 -12.93959 -12.81696 -12.77568 -12.43219 -12.31703 -12.18251 -12.01118 -11.93517 -11.62972 -11.45977 -11.21913 -10.65831 -10.09272 -9.52771 -9.23679 -8.94315 -8.55243 -7.59307 -4.96799 0.97302 1.42820 1.46806 1.54591 1.68914 2.23706 2.55214 2.58898 2.84251 3.46082 3.89706 3.99011 4.03601 4.05417 4.25315 4.29697 4.32616 4.38267 4.47903 4.56631 4.65552 4.70894 4.76225 4.79011 4.87719 4.98958 5.03284 5.09509 5.12026 5.13855 5.20617 5.25282 5.37795 5.53066 5.55301 5.92955 5.96325 6.01010 6.10742 6.14051 6.49127 6.75392 6.90546 7.29141 7.83282 8.01328 8.67428 9.42032 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017948 B = 0.006114 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.678666 B = 4578.569808 C = 5605.197709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.086 3.914 3 N -0.603 5.603 4 C 0.540 3.460 5 O -0.521 6.521 6 C -0.251 4.251 7 C -0.203 4.203 8 C -0.004 4.004 9 N -0.540 5.540 10 H 0.429 0.571 11 C 0.076 3.924 12 C -0.082 4.082 13 C 0.151 3.849 14 H 0.124 0.876 15 C -0.146 4.146 16 C 0.167 3.833 17 N -0.591 5.591 18 C -0.213 4.213 19 H 0.065 0.935 20 C -0.074 4.074 21 N -0.947 5.947 22 Si 0.972 3.028 23 H -0.295 1.295 24 H -0.292 1.292 25 H -0.271 1.271 26 C 0.139 3.861 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.188 0.812 33 H 0.212 0.788 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.007 0.993 41 H 0.238 0.762 42 H 0.024 0.976 43 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.805 -19.696 6.983 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.035 4.035 3 N -0.338 5.338 4 C 0.330 3.670 5 O -0.398 6.398 6 C -0.261 4.261 7 C -0.226 4.226 8 C -0.132 4.132 9 N -0.138 5.138 10 H 0.268 0.732 11 C -0.042 4.042 12 C -0.140 4.140 13 C 0.046 3.954 14 H 0.142 0.858 15 C -0.185 4.185 16 C 0.042 3.958 17 N -0.315 5.315 18 C -0.343 4.343 19 H 0.083 0.917 20 C -0.265 4.265 21 N -0.599 5.599 22 Si 0.802 3.198 23 H -0.223 1.223 24 H -0.218 1.218 25 H -0.196 1.196 26 C 0.013 3.987 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.204 0.796 33 H 0.229 0.771 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.024 0.976 41 H 0.048 0.952 42 H 0.042 0.958 43 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -9.528 -18.924 7.149 22.361 hybrid contribution 0.209 1.648 0.587 1.762 sum -9.319 -17.276 7.736 21.099 Atomic orbital electron populations 1.22328 0.95317 1.03409 1.01782 1.22367 0.94911 0.81237 1.04992 1.47743 1.66105 1.14808 1.05102 1.18114 0.78336 0.86343 0.84160 1.91140 1.44612 1.17136 1.86864 1.20442 1.14531 0.99621 0.91518 1.23211 1.06280 0.95888 0.97198 1.22499 1.04772 0.93406 0.92541 1.41552 1.48005 1.14838 1.09359 0.73213 1.20205 1.01323 0.93297 0.89362 1.20280 1.00096 0.91306 1.02270 1.21927 0.94252 0.92507 0.86687 0.85789 1.23339 0.96029 0.98549 1.00630 1.21709 0.90997 0.87988 0.95065 1.44330 1.10326 1.00895 1.75932 1.19303 0.97277 0.82491 1.35265 0.91743 1.25455 0.96302 1.01778 1.02985 1.70150 1.03166 1.33507 1.53088 0.85148 0.76472 0.80815 0.77398 1.22337 1.21812 1.19588 1.21473 0.91086 0.90938 0.95213 0.93172 0.93404 0.88414 0.88848 0.87744 0.79579 0.77102 0.91694 0.89475 0.92752 0.91076 0.90874 0.93310 0.97577 0.95216 0.95837 0.98363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 8.70 71.98 0.63 -2.52 16 2 C 0.09 1.87 5.60 86.38 0.48 2.35 16 3 N -0.60 -20.47 2.53 -795.26 -2.01 -22.48 16 4 C 0.54 22.45 6.69 86.62 0.58 23.03 16 5 O -0.52 -27.78 8.39 -4.11 -0.03 -27.81 16 6 C -0.25 -8.38 6.01 -19.04 -0.11 -8.49 16 7 C -0.20 -4.51 7.48 23.62 0.18 -4.33 16 8 C 0.00 -0.07 11.89 83.12 0.99 0.91 16 9 N -0.54 -10.58 5.90 -182.72 -1.08 -11.65 16 10 H 0.43 5.22 8.96 -92.70 -0.83 4.39 16 11 C 0.08 2.33 7.17 41.78 0.30 2.63 16 12 C -0.08 -2.76 9.79 71.24 0.70 -2.07 16 13 C 0.15 5.57 3.66 46.18 0.17 5.74 16 14 H 0.12 3.50 7.95 -2.39 -0.02 3.48 16 15 C -0.15 -6.07 6.70 31.98 0.21 -5.85 16 16 C 0.17 9.38 4.92 86.85 0.43 9.81 16 17 N -0.59 -34.39 2.23 -692.02 -1.55 -35.94 16 18 C -0.21 -13.51 10.27 84.04 0.86 -12.64 16 19 H 0.06 3.99 7.83 -2.91 -0.02 3.97 16 20 C -0.07 -4.66 5.49 84.86 0.47 -4.19 16 21 N -0.95 -62.53 10.09 21.65 0.22 -62.32 16 22 Si 0.97 50.73 29.55 68.60 2.03 52.76 16 23 H -0.30 -15.38 7.11 99.48 0.71 -14.68 16 24 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 25 H -0.27 -13.36 7.11 99.48 0.71 -12.66 16 26 C 0.14 6.66 5.99 86.73 0.52 7.18 16 27 H 0.05 1.12 6.37 -2.39 -0.02 1.11 16 28 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.59 7.95 -2.39 -0.02 1.57 16 31 H 0.10 2.08 4.55 -2.39 -0.01 2.07 16 32 H 0.19 3.14 3.70 -2.91 -0.01 3.13 16 33 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 2.42 6.72 -2.39 -0.02 2.41 16 37 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.05 3.12 5.87 -2.39 -0.01 3.11 16 40 H 0.01 0.41 5.48 -2.42 -0.01 0.40 16 41 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.00 -0.08 7.17 -2.39 -0.02 -0.10 16 Total: -1.00 -87.20 326.29 4.17 -83.02 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.20 Total: 12.86 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 6.39 Total: 11.56 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -4.42 Total: -132.39 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.03 Total: -27.81 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.03 Total: 52.76 kcal Total: -87.20 4.17 -83.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033799359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.114 kcal (2) G-P(sol) polarization free energy of solvation -87.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds