Wall clock time and date at job start Tue Mar 31 2020 06:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46503 * 109.47602 * 2 1 4 4 C 1.34778 * 119.99658 * 94.45121 * 3 2 1 5 5 O 1.21634 * 119.99550 * 183.82287 * 4 3 2 6 6 C 1.47254 * 120.00356 * 3.82613 * 4 3 2 7 7 C 1.46688 * 126.94252 * 320.89550 * 6 4 3 8 8 C 1.34486 * 106.33738 * 180.02562 * 7 6 4 9 9 N 1.36455 * 108.85269 * 0.02562 * 8 7 6 10 10 H 0.96994 * 124.85079 * 180.02562 * 9 8 7 11 11 C 1.34657 * 110.29731 * 359.73030 * 9 8 7 12 12 C 1.50703 * 125.80239 * 180.30494 * 11 9 8 13 13 C 1.46496 * 119.99787 * 274.45501 * 3 2 1 14 14 H 1.09001 * 110.89092 * 356.12270 * 13 3 2 15 15 C 1.55161 * 111.00270 * 119.99720 * 13 3 2 16 16 C 1.54320 * 102.94107 * 153.57466 * 15 13 3 17 17 N 1.47019 * 107.27428 * 337.80725 * 16 15 13 18 18 C 1.36941 * 125.64885 * 178.89528 * 17 16 15 19 19 H 1.07997 * 119.99286 * 187.52635 * 18 17 16 20 20 C 1.38807 * 119.99725 * 7.52882 * 18 17 16 21 21 N 1.31614 * 120.00482 * 350.77064 * 20 18 17 22 22 Si 1.86807 * 119.99582 * 170.77422 * 20 18 17 23 23 H 1.48495 * 109.47342 * 94.96496 * 22 20 18 24 24 H 1.48504 * 109.46839 * 214.96611 * 22 20 18 25 25 H 1.48501 * 109.47112 * 334.95953 * 22 20 18 26 26 C 1.47424 * 108.70207 * 358.94067 * 17 16 15 27 27 H 1.09004 * 109.47398 * 59.99636 * 1 2 3 28 28 H 1.08997 * 109.47354 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46971 * 300.00413 * 1 2 3 30 30 H 1.09004 * 109.47398 * 120.00364 * 2 1 3 31 31 H 1.08996 * 109.47285 * 239.99674 * 2 1 3 32 32 H 1.08004 * 126.83202 * 0.04141 * 7 6 4 33 33 H 1.07994 * 125.57592 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.46911 * 270.16383 * 12 11 9 35 35 H 1.08998 * 109.47067 * 30.16128 * 12 11 9 36 36 H 1.08997 * 109.47463 * 150.16347 * 12 11 9 37 37 H 1.09000 * 110.72407 * 271.94073 * 15 13 3 38 38 H 1.09008 * 110.72166 * 35.21396 * 15 13 3 39 39 H 1.08998 * 109.88202 * 97.22781 * 16 15 13 40 40 H 1.09003 * 109.87900 * 218.38922 * 16 15 13 41 41 H 0.97006 * 120.00147 * 179.97438 * 21 20 18 42 42 H 1.09003 * 110.36791 * 265.29198 * 26 17 16 43 43 H 1.08997 * 110.36647 * 142.96294 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3284 1.9863 1.1637 5 8 2.6674 3.1544 1.1703 6 6 2.2570 1.2332 2.4271 7 6 1.2410 0.2464 2.8090 8 6 1.5725 -0.1806 4.0405 9 7 2.7061 0.4649 4.4407 10 1 3.1482 0.3312 5.2936 11 6 3.1268 1.3093 3.4799 12 6 4.3473 2.1904 3.5530 13 6 2.1697 2.1046 -1.2649 14 1 1.9440 1.4572 -2.1123 15 6 1.2836 3.3781 -1.2866 16 6 2.0336 4.3043 -2.2669 17 7 3.4318 3.8520 -2.3118 18 6 4.4233 4.3989 -3.0819 19 1 5.3899 3.9205 -3.1372 20 6 4.1858 5.5681 -3.7914 21 7 2.9646 6.0523 -3.8723 22 14 5.5995 6.4544 -4.6314 23 1 5.6778 6.0270 -6.0514 24 1 5.3724 7.9205 -4.5674 25 1 6.8721 6.1202 -3.9429 26 6 3.5894 2.7114 -1.3912 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 0.3953 -0.0738 2.2186 33 1 1.0302 -0.9144 4.6181 34 1 4.0749 3.1532 3.9853 35 1 5.1032 1.7130 4.1765 36 1 4.7464 2.3423 2.5502 37 1 0.2860 3.1476 -1.6606 38 1 1.2305 3.8280 -0.2951 39 1 1.5886 4.2320 -3.2593 40 1 1.9883 5.3340 -1.9122 41 1 2.7987 6.8696 -4.3678 42 1 3.9431 3.0546 -0.4189 43 1 4.2792 1.9785 -1.8097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033799361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:46 Heat of formation + Delta-G solvation = 51.644591 kcal Electronic energy + Delta-G solvation = -24255.287627 eV Core-core repulsion = 20916.663895 eV Total energy + Delta-G solvation = -3338.623732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.33079 -39.39167 -36.49902 -35.37444 -32.38841 -31.61879 -30.90214 -30.16277 -28.85619 -27.16966 -26.09020 -24.37419 -23.43357 -21.97179 -21.00408 -20.10693 -19.86408 -17.96723 -17.44948 -16.70371 -16.18098 -15.56543 -14.79515 -14.51670 -14.41584 -14.22627 -14.01285 -13.71131 -13.10815 -13.00256 -12.75828 -12.64680 -12.56555 -12.48361 -12.04674 -11.86236 -11.60706 -11.59008 -11.56426 -11.04430 -10.80234 -10.73206 -10.47991 -10.16153 -9.97509 -9.76777 -9.49468 -8.97207 -8.73312 -8.43581 -8.23047 -8.03026 -6.59505 -5.57112 -2.86791 1.95584 2.42578 3.05213 3.45249 3.49673 3.55496 3.58137 3.64979 4.64865 4.79782 4.84402 5.05640 5.13094 5.16404 5.28023 5.41174 5.55623 5.59099 5.60932 5.71428 5.76338 5.79717 5.84608 5.88569 5.92514 6.00349 6.06899 6.09848 6.32796 6.43927 6.67584 6.72609 6.76697 6.85117 6.92907 6.96554 7.37512 7.43403 7.71243 7.87201 7.93140 8.00996 8.43061 8.76911 9.38249 9.99647 10.68440 11.55384 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.004287 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.852716 B = 6529.245436 C = 7263.934013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.101 3.899 3 N -0.598 5.598 4 C 0.584 3.416 5 O -0.521 6.521 6 C -0.221 4.221 7 C -0.178 4.178 8 C -0.023 4.023 9 N -0.556 5.556 10 H 0.413 0.587 11 C 0.090 3.910 12 C -0.089 4.089 13 C 0.133 3.867 14 H 0.088 0.912 15 C -0.153 4.153 16 C 0.184 3.816 17 N -0.602 5.602 18 C -0.223 4.223 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.906 3.094 23 H -0.291 1.291 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.126 3.874 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.044 0.956 41 H 0.250 0.750 42 H 0.047 0.953 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.335 -16.697 16.609 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.022 4.022 3 N -0.331 5.331 4 C 0.373 3.627 5 O -0.398 6.398 6 C -0.231 4.231 7 C -0.202 4.202 8 C -0.151 4.151 9 N -0.152 5.152 10 H 0.249 0.751 11 C -0.027 4.027 12 C -0.147 4.147 13 C 0.030 3.970 14 H 0.106 0.894 15 C -0.192 4.192 16 C 0.059 3.941 17 N -0.329 5.329 18 C -0.352 4.352 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.737 3.263 23 H -0.219 1.219 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.001 4.001 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.171 0.829 33 H 0.183 0.817 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -4.083 -15.917 16.570 23.337 hybrid contribution 0.643 0.249 -0.122 0.700 sum -3.440 -15.668 16.448 22.975 Atomic orbital electron populations 1.22355 0.96487 1.01707 1.02807 1.21675 0.94101 0.83189 1.03244 1.47765 1.65465 1.13668 1.06196 1.17410 0.77003 0.85974 0.82345 1.90825 1.46718 1.15664 1.86597 1.20283 1.00762 1.05704 0.96325 1.22474 1.01421 0.99923 0.96377 1.21701 0.91881 1.03413 0.98089 1.41531 1.23125 1.34085 1.16437 0.75123 1.20245 0.98319 0.95414 0.88682 1.20433 0.92020 0.97627 1.04582 1.22339 0.98359 0.92954 0.83389 0.89422 1.23225 0.97421 0.96444 1.02092 1.21047 0.83046 0.95018 0.94950 1.44308 1.06754 1.34562 1.47230 1.19028 0.91895 1.04110 1.20124 0.90637 1.24799 0.96621 0.98029 1.00964 1.69999 1.17854 1.22970 1.45840 0.86181 0.81795 0.79383 0.78948 1.21865 1.21708 1.20725 1.21879 0.92905 0.90147 0.95156 0.92065 0.91900 0.91918 0.89370 0.91065 0.82917 0.81681 0.90125 0.91948 0.89243 0.92970 0.90594 0.94348 0.93804 0.93933 0.93512 0.95317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 9.25 37.15 0.34 -1.44 16 2 C 0.10 1.21 5.62 -4.04 -0.02 1.18 16 3 N -0.60 -9.76 2.56 -164.99 -0.42 -10.18 16 4 C 0.58 10.36 6.58 -12.60 -0.08 10.28 16 5 O -0.52 -11.38 12.40 5.25 0.07 -11.31 16 6 C -0.22 -3.15 5.40 -103.35 -0.56 -3.71 16 7 C -0.18 -1.95 8.50 -37.50 -0.32 -2.27 16 8 C -0.02 -0.20 11.89 -16.82 -0.20 -0.40 16 9 N -0.56 -4.78 5.90 -9.10 -0.05 -4.83 16 10 H 0.41 2.13 8.96 -40.82 -0.37 1.76 16 11 C 0.09 1.09 7.17 -81.88 -0.59 0.50 16 12 C -0.09 -1.01 9.87 36.01 0.36 -0.65 16 13 C 0.13 2.60 3.56 -65.78 -0.23 2.37 16 14 H 0.09 1.60 7.92 -51.93 -0.41 1.19 16 15 C -0.15 -3.30 6.33 -24.90 -0.16 -3.46 16 16 C 0.18 4.93 5.38 -3.07 -0.02 4.91 16 17 N -0.60 -16.77 3.39 -170.08 -0.58 -17.35 16 18 C -0.22 -6.64 10.25 -15.06 -0.15 -6.80 16 19 H 0.08 2.17 7.85 -52.49 -0.41 1.75 16 20 C -0.01 -0.24 5.47 -17.43 -0.10 -0.34 16 21 N -0.92 -28.49 10.40 55.49 0.58 -27.91 16 22 Si 0.91 23.14 29.56 -169.99 -5.03 18.11 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.13 2.96 6.58 -2.53 -0.02 2.94 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.66 6.11 -51.93 -0.32 0.35 16 30 H 0.09 0.96 5.22 -51.93 -0.27 0.69 16 31 H 0.07 0.78 8.02 -51.93 -0.42 0.37 16 32 H 0.15 1.47 4.44 -52.48 -0.23 1.23 16 33 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 1.23 7.66 -51.93 -0.40 0.83 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.75 6.12 -51.92 -0.32 1.43 16 39 H 0.04 1.09 7.57 -51.93 -0.39 0.70 16 40 H 0.04 1.31 7.37 -51.93 -0.38 0.93 16 41 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.05 1.18 5.67 -51.93 -0.29 0.89 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 335.51 15.07 5.06 5.06 Total: -1.00 -36.06 335.51 -8.43 -44.50 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.31 Total: 0.80 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.75 Total: 3.12 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.48 Total: -60.27 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.07 Total: -11.31 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.03 Total: 18.11 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.06 -8.43 -44.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033799361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.142 kcal (2) G-P(sol) polarization free energy of solvation -36.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds