Wall clock time and date at job start Tue Mar 31 2020 06:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47616 * 2 1 4 4 C 1.34780 * 120.00156 * 94.63882 * 3 2 1 5 5 O 1.21693 * 119.99985 * 186.58782 * 4 3 2 6 6 C 1.46679 * 119.99827 * 6.59525 * 4 3 2 7 7 N 1.37649 * 126.23337 * 334.47175 * 6 4 3 8 8 H 0.96997 * 125.68258 * 359.93529 * 7 6 4 9 9 C 1.35532 * 108.64107 * 179.97438 * 7 6 4 10 10 C 1.35455 * 108.87616 * 0.02562 * 9 7 6 11 11 C 1.37872 * 126.23038 * 154.42757 * 6 4 3 12 12 C 1.50700 * 126.45796 * 0.03783 * 11 6 4 13 13 C 1.46502 * 119.99588 * 274.64674 * 3 2 1 14 14 H 1.08990 * 110.64416 * 11.99222 * 13 3 2 15 15 C 1.55162 * 110.71484 * 248.65689 * 13 3 2 16 16 C 1.54919 * 101.57983 * 277.13797 * 15 13 3 17 17 N 1.47420 * 104.83251 * 322.99181 * 16 15 13 18 18 C 1.36939 * 125.65017 * 204.15924 * 17 16 15 19 19 H 1.08000 * 120.00395 * 179.97438 * 18 17 16 20 20 C 1.38815 * 119.99459 * 359.96723 * 18 17 16 21 21 N 1.31611 * 120.00255 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99540 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46716 * 89.99968 * 22 20 18 24 24 H 1.48496 * 109.46925 * 209.99471 * 22 20 18 25 25 H 1.48501 * 109.47299 * 329.99926 * 22 20 18 26 26 C 1.47022 * 108.70322 * 24.13057 * 17 16 15 27 27 H 1.09003 * 109.46792 * 300.00533 * 1 2 3 28 28 H 1.08999 * 109.47201 * 60.00027 * 1 2 3 29 29 H 1.08994 * 109.47463 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46792 * 239.99467 * 2 1 3 31 31 H 1.09008 * 109.47023 * 119.99785 * 2 1 3 32 32 H 1.07999 * 125.56031 * 179.73141 * 9 7 6 33 33 H 1.07992 * 126.06924 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.47013 * 90.00047 * 12 11 6 35 35 H 1.08999 * 109.46990 * 209.99630 * 12 11 6 36 36 H 1.08995 * 109.47064 * 329.99760 * 12 11 6 37 37 H 1.08993 * 111.00551 * 35.21556 * 15 13 3 38 38 H 1.09001 * 111.00186 * 159.07108 * 15 13 3 39 39 H 1.08994 * 110.36249 * 204.15475 * 16 15 13 40 40 H 1.08997 * 110.36037 * 81.83461 * 16 15 13 41 41 H 0.97005 * 119.99854 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.88366 * 239.52254 * 26 17 16 43 43 H 1.09006 * 109.88616 * 118.35785 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3321 1.9850 1.1634 5 8 2.6225 3.1667 1.1766 6 6 2.3237 1.2178 2.4135 7 7 1.5859 0.0838 2.6672 8 1 0.9783 -0.3467 2.0456 9 6 1.8494 -0.3309 3.9303 10 6 2.7431 0.5175 4.4927 11 6 3.0539 1.5009 3.5482 12 6 4.0065 2.6534 3.7358 13 6 2.1657 2.1059 -1.2646 14 1 1.6791 1.5653 -2.0763 15 6 3.6638 2.3524 -1.5847 16 6 3.9562 3.6218 -0.7462 17 7 2.7266 4.4293 -0.8426 18 6 2.6483 5.7866 -0.6794 19 1 1.6958 6.2875 -0.7707 20 6 3.7933 6.5188 -0.3966 21 7 4.9539 5.9084 -0.2847 22 14 3.6866 8.3705 -0.1747 23 1 3.4330 8.6839 1.2546 24 1 4.9657 8.9943 -0.5989 25 1 2.5762 8.9052 -1.0033 26 6 1.5984 3.5359 -1.1436 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.4138 -1.1940 4.4117 33 1 3.1447 0.4468 5.4926 34 1 3.4646 3.5118 4.1328 35 1 4.7923 2.3652 4.4341 36 1 4.4517 2.9166 2.7764 37 1 4.2772 1.5149 -1.2526 38 1 3.8098 2.5442 -2.6477 39 1 4.8018 4.1669 -1.1655 40 1 4.1537 3.3536 0.2916 41 1 5.7539 6.4200 -0.0867 42 1 1.1328 3.8307 -2.0841 43 1 0.8669 3.5775 -0.3365 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033815373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:25 Heat of formation + Delta-G solvation = 90.895201 kcal Electronic energy + Delta-G solvation = -25171.608279 eV Core-core repulsion = 21834.686581 eV Total energy + Delta-G solvation = -3336.921698 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.37805 -39.38383 -36.13421 -35.60945 -32.47314 -32.01090 -30.25843 -29.54082 -28.73964 -27.17852 -26.29193 -24.32354 -23.39960 -22.09878 -21.03306 -19.87644 -19.32667 -18.56088 -17.24117 -16.54948 -16.17560 -15.59403 -15.06603 -14.45578 -14.13484 -13.92387 -13.63007 -13.50575 -13.30765 -13.15812 -12.80701 -12.46322 -12.27213 -12.07704 -11.97027 -11.81149 -11.67108 -11.38463 -11.24603 -11.13987 -10.82151 -10.69713 -10.67707 -9.93842 -9.90492 -9.61288 -9.34894 -8.97801 -8.56707 -8.48479 -7.88545 -7.78379 -6.43062 -5.35885 -2.72150 1.87998 2.93529 3.20931 3.37668 3.55384 3.59924 3.61207 3.85512 4.67289 4.71987 4.87838 4.98351 5.09432 5.19132 5.40264 5.46962 5.49832 5.54769 5.61475 5.65401 5.74628 5.84696 5.97484 6.02432 6.08441 6.19542 6.31243 6.37583 6.46304 6.56373 6.68125 6.73312 6.78816 6.87225 6.98262 7.21539 7.27662 7.53674 7.83319 7.89139 8.01954 8.15846 8.65421 8.91967 9.52133 10.13764 10.81105 11.67775 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017763 B = 0.006147 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.894962 B = 4553.878566 C = 5545.972264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 N -0.610 5.610 4 C 0.545 3.455 5 O -0.424 6.424 6 C -0.037 4.037 7 N -0.550 5.550 8 H 0.417 0.583 9 C -0.003 4.003 10 C -0.207 4.207 11 C -0.088 4.088 12 C -0.084 4.084 13 C 0.137 3.863 14 H 0.081 0.919 15 C -0.161 4.161 16 C 0.155 3.845 17 N -0.577 5.577 18 C -0.201 4.201 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.907 3.093 23 H -0.292 1.292 24 H -0.293 1.293 25 H -0.285 1.285 26 C 0.140 3.860 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.164 0.836 33 H 0.137 0.863 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.246 0.754 42 H 0.019 0.981 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 -17.735 3.776 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.038 4.038 3 N -0.347 5.347 4 C 0.331 3.669 5 O -0.292 6.292 6 C -0.150 4.150 7 N -0.154 5.154 8 H 0.261 0.739 9 C -0.138 4.138 10 C -0.232 4.232 11 C -0.096 4.096 12 C -0.141 4.141 13 C 0.034 3.966 14 H 0.099 0.901 15 C -0.200 4.200 16 C 0.031 3.969 17 N -0.301 5.301 18 C -0.330 4.330 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.570 5.570 22 Si 0.738 3.262 23 H -0.220 1.220 24 H -0.220 1.220 25 H -0.211 1.211 26 C 0.013 3.987 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.181 0.819 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.037 0.963 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -6.651 -16.891 3.681 18.523 hybrid contribution -0.574 0.387 0.054 0.694 sum -7.225 -16.504 3.735 18.399 Atomic orbital electron populations 1.22390 0.96343 1.02003 1.03427 1.21851 0.93987 0.84491 1.03426 1.47789 1.67544 1.12907 1.06479 1.17236 0.80511 0.87467 0.81657 1.91262 1.41332 1.12300 1.84307 1.20670 1.04030 0.92469 0.97800 1.42957 1.36366 1.22611 1.13423 0.73900 1.21897 1.03428 1.02285 0.86141 1.20737 1.04079 0.98046 1.00366 1.19945 0.99664 0.98207 0.91745 1.20233 0.96413 0.94471 1.02980 1.22063 0.97724 0.93306 0.83486 0.90055 1.23547 0.94118 1.01272 1.01107 1.22154 0.91333 0.86981 0.96437 1.44139 1.01851 1.02035 1.82115 1.18958 0.93668 0.81108 1.39297 0.91267 1.24647 0.95675 0.97476 1.03017 1.69825 0.97937 1.32744 1.56473 0.86176 0.76432 0.85875 0.77673 1.22012 1.21990 1.21088 1.21368 0.92299 0.88230 0.96811 0.92563 0.91100 0.91508 0.90227 0.90198 0.81870 0.84510 0.91445 0.92584 0.90471 0.92643 0.91695 0.88869 0.94124 0.94308 0.96324 0.96224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 9.28 37.16 0.34 -1.31 16 2 C 0.09 0.96 5.63 -4.04 -0.02 0.94 16 3 N -0.61 -9.93 2.50 -165.55 -0.41 -10.34 16 4 C 0.55 10.64 6.59 -12.85 -0.08 10.56 16 5 O -0.42 -10.45 8.97 5.19 0.05 -10.40 16 6 C -0.04 -0.62 6.46 -81.98 -0.53 -1.15 16 7 N -0.55 -6.78 4.81 -9.39 -0.05 -6.82 16 8 H 0.42 4.05 4.40 -40.82 -0.18 3.87 16 9 C 0.00 -0.04 11.89 -16.91 -0.20 -0.24 16 10 C -0.21 -2.78 10.76 -39.98 -0.43 -3.21 16 11 C -0.09 -1.48 6.20 -104.16 -0.65 -2.12 16 12 C -0.08 -1.49 9.71 36.01 0.35 -1.14 16 13 C 0.14 2.46 3.70 -66.09 -0.24 2.22 16 14 H 0.08 1.19 8.00 -51.93 -0.42 0.77 16 15 C -0.16 -3.22 6.68 -24.57 -0.16 -3.38 16 16 C 0.16 4.03 4.91 -2.53 -0.01 4.02 16 17 N -0.58 -15.65 2.26 -170.07 -0.38 -16.04 16 18 C -0.20 -6.00 10.27 -15.06 -0.15 -6.15 16 19 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 20 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 21 N -0.92 -28.41 10.09 55.49 0.56 -27.85 16 22 Si 0.91 23.56 29.55 -169.99 -5.02 18.54 16 23 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 24 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 25 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 26 C 0.14 3.14 6.00 -3.07 -0.02 3.12 16 27 H 0.06 0.57 7.43 -51.93 -0.39 0.19 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 31 H 0.08 0.83 4.46 -51.92 -0.23 0.60 16 32 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.61 7.23 -51.93 -0.38 1.24 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.09 2.74 5.87 -51.93 -0.31 2.43 16 40 H 0.04 1.16 5.33 -52.16 -0.28 0.88 16 41 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.47 7.29 -51.93 -0.38 0.10 16 LS Contribution 330.44 15.07 4.98 4.98 Total: -1.00 -35.21 330.44 -8.51 -43.72 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.32 Total: 2.56 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -1.91 Total: 1.65 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -0.28 Total: -61.05 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.05 Total: -10.40 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.02 Total: 18.54 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.21 -8.51 -43.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033815373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.616 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds