Wall clock time and date at job start Tue Mar 31 2020 06:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47616 * 2 1 4 4 C 1.34780 * 120.00156 * 94.63882 * 3 2 1 5 5 O 1.21693 * 119.99985 * 186.58782 * 4 3 2 6 6 C 1.46679 * 119.99827 * 6.59525 * 4 3 2 7 7 N 1.37649 * 126.23337 * 334.47175 * 6 4 3 8 8 H 0.96997 * 125.68258 * 359.93529 * 7 6 4 9 9 C 1.35532 * 108.64107 * 179.97438 * 7 6 4 10 10 C 1.35455 * 108.87616 * 0.02562 * 9 7 6 11 11 C 1.37872 * 126.23038 * 154.42757 * 6 4 3 12 12 C 1.50700 * 126.45796 * 0.03783 * 11 6 4 13 13 C 1.46502 * 119.99588 * 274.64674 * 3 2 1 14 14 H 1.08990 * 110.64416 * 11.99222 * 13 3 2 15 15 C 1.55162 * 110.71484 * 248.65689 * 13 3 2 16 16 C 1.54919 * 101.57983 * 277.13797 * 15 13 3 17 17 N 1.47420 * 104.83251 * 322.99181 * 16 15 13 18 18 C 1.36939 * 125.65017 * 204.15924 * 17 16 15 19 19 H 1.08000 * 120.00395 * 179.97438 * 18 17 16 20 20 C 1.38815 * 119.99459 * 359.96723 * 18 17 16 21 21 N 1.31611 * 120.00255 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99540 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46716 * 89.99968 * 22 20 18 24 24 H 1.48496 * 109.46925 * 209.99471 * 22 20 18 25 25 H 1.48501 * 109.47299 * 329.99926 * 22 20 18 26 26 C 1.47022 * 108.70322 * 24.13057 * 17 16 15 27 27 H 1.09003 * 109.46792 * 300.00533 * 1 2 3 28 28 H 1.08999 * 109.47201 * 60.00027 * 1 2 3 29 29 H 1.08994 * 109.47463 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46792 * 239.99467 * 2 1 3 31 31 H 1.09008 * 109.47023 * 119.99785 * 2 1 3 32 32 H 1.07999 * 125.56031 * 179.73141 * 9 7 6 33 33 H 1.07992 * 126.06924 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.47013 * 90.00047 * 12 11 6 35 35 H 1.08999 * 109.46990 * 209.99630 * 12 11 6 36 36 H 1.08995 * 109.47064 * 329.99760 * 12 11 6 37 37 H 1.08993 * 111.00551 * 35.21556 * 15 13 3 38 38 H 1.09001 * 111.00186 * 159.07108 * 15 13 3 39 39 H 1.08994 * 110.36249 * 204.15475 * 16 15 13 40 40 H 1.08997 * 110.36037 * 81.83461 * 16 15 13 41 41 H 0.97005 * 119.99854 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.88366 * 239.52254 * 26 17 16 43 43 H 1.09006 * 109.88616 * 118.35785 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3321 1.9850 1.1634 5 8 2.6225 3.1667 1.1766 6 6 2.3237 1.2178 2.4135 7 7 1.5859 0.0838 2.6672 8 1 0.9783 -0.3467 2.0456 9 6 1.8494 -0.3309 3.9303 10 6 2.7431 0.5175 4.4927 11 6 3.0539 1.5009 3.5482 12 6 4.0065 2.6534 3.7358 13 6 2.1657 2.1059 -1.2646 14 1 1.6791 1.5653 -2.0763 15 6 3.6638 2.3524 -1.5847 16 6 3.9562 3.6218 -0.7462 17 7 2.7266 4.4293 -0.8426 18 6 2.6483 5.7866 -0.6794 19 1 1.6958 6.2875 -0.7707 20 6 3.7933 6.5188 -0.3966 21 7 4.9539 5.9084 -0.2847 22 14 3.6866 8.3705 -0.1747 23 1 3.4330 8.6839 1.2546 24 1 4.9657 8.9943 -0.5989 25 1 2.5762 8.9052 -1.0033 26 6 1.5984 3.5359 -1.1436 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.4138 -1.1940 4.4117 33 1 3.1447 0.4468 5.4926 34 1 3.4646 3.5118 4.1328 35 1 4.7923 2.3652 4.4341 36 1 4.4517 2.9166 2.7764 37 1 4.2772 1.5149 -1.2526 38 1 3.8098 2.5442 -2.6477 39 1 4.8018 4.1669 -1.1655 40 1 4.1537 3.3536 0.2916 41 1 5.7539 6.4200 -0.0867 42 1 1.1328 3.8307 -2.0841 43 1 0.8669 3.5775 -0.3365 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033815373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:24 Heat of formation + Delta-G solvation = 67.936683 kcal Electronic energy + Delta-G solvation = -25172.603835 eV Core-core repulsion = 21834.686581 eV Total energy + Delta-G solvation = -3337.917254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.53042 -40.80338 -37.82318 -36.97631 -34.31362 -33.39021 -31.64893 -30.81908 -30.38870 -28.86858 -27.64560 -26.38226 -24.45483 -23.38673 -22.16687 -21.83764 -20.72083 -19.74828 -18.85110 -18.25813 -17.54947 -17.00171 -16.59031 -16.33096 -15.60537 -15.33801 -15.02783 -14.93789 -14.52052 -14.33893 -13.95002 -13.84271 -13.66708 -13.58104 -13.48847 -13.27379 -13.08781 -12.89334 -12.82226 -12.70036 -12.47443 -12.31958 -12.10850 -11.98063 -11.72701 -11.59173 -11.32970 -10.75966 -10.37920 -9.64108 -9.41409 -8.99199 -8.59228 -7.62429 -5.00538 0.67779 1.41818 1.46207 1.53423 1.87919 2.01114 2.24302 2.54883 2.58946 3.43492 3.68856 3.86518 3.90084 3.94444 4.18756 4.25367 4.27179 4.29375 4.32020 4.41518 4.47868 4.70645 4.74581 4.81527 4.82393 4.85551 4.91524 5.04144 5.06451 5.07910 5.13657 5.15927 5.28892 5.47350 5.50970 5.78236 5.87352 5.91888 6.02570 6.05800 6.46140 6.56558 6.66594 7.25670 7.51098 7.97698 8.62632 9.38686 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017763 B = 0.006147 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.894962 B = 4553.878566 C = 5545.972264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.080 3.920 3 N -0.606 5.606 4 C 0.540 3.460 5 O -0.494 6.494 6 C -0.070 4.070 7 N -0.533 5.533 8 H 0.431 0.569 9 C 0.035 3.965 10 C -0.225 4.225 11 C -0.114 4.114 12 C -0.075 4.075 13 C 0.152 3.848 14 H 0.133 0.867 15 C -0.146 4.146 16 C 0.161 3.839 17 N -0.593 5.593 18 C -0.218 4.218 19 H 0.066 0.934 20 C -0.072 4.072 21 N -0.946 5.946 22 Si 0.972 3.028 23 H -0.297 1.297 24 H -0.291 1.291 25 H -0.269 1.269 26 C 0.137 3.863 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.220 0.780 33 H 0.158 0.842 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.010 0.990 41 H 0.239 0.761 42 H 0.029 0.971 43 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.003 -21.525 3.841 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.042 4.042 3 N -0.342 5.342 4 C 0.329 3.671 5 O -0.367 6.367 6 C -0.182 4.182 7 N -0.137 5.137 8 H 0.278 0.722 9 C -0.101 4.101 10 C -0.248 4.248 11 C -0.123 4.123 12 C -0.132 4.132 13 C 0.049 3.951 14 H 0.150 0.850 15 C -0.186 4.186 16 C 0.036 3.964 17 N -0.318 5.318 18 C -0.348 4.348 19 H 0.084 0.916 20 C -0.264 4.264 21 N -0.597 5.597 22 Si 0.801 3.199 23 H -0.225 1.225 24 H -0.217 1.217 25 H -0.194 1.194 26 C 0.010 3.990 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.236 0.764 33 H 0.176 0.824 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.028 0.972 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -8.867 -20.760 3.705 22.876 hybrid contribution 0.034 1.452 0.132 1.458 sum -8.833 -19.308 3.837 21.577 Atomic orbital electron populations 1.22355 0.94403 1.04304 1.02484 1.22237 0.95433 0.81336 1.05218 1.47882 1.66579 1.14790 1.04899 1.17743 0.79119 0.87013 0.83274 1.91233 1.44653 1.15301 1.85543 1.20257 1.06407 0.94635 0.96947 1.42897 1.35550 1.20994 1.14300 0.72201 1.22725 1.00631 1.02006 0.84696 1.21022 1.05262 0.97620 1.00944 1.20115 1.00010 0.98713 0.93421 1.20057 0.97310 0.94997 1.00873 1.21965 0.95879 0.91610 0.85683 0.84963 1.23355 0.96120 0.98564 1.00539 1.21817 0.89904 0.88996 0.95654 1.44348 1.03768 1.01844 1.81804 1.19298 0.93572 0.83037 1.38850 0.91571 1.25473 0.95480 1.01899 1.03557 1.70133 0.98229 1.33880 1.57437 0.85160 0.76763 0.80739 0.77224 1.22462 1.21744 1.19419 1.21522 0.90859 0.90547 0.96041 0.94026 0.91638 0.87484 0.87502 0.89356 0.76379 0.82415 0.93328 0.90132 0.94968 0.91035 0.90502 0.93206 0.97209 0.95145 0.95312 0.98265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 9.28 71.98 0.67 -1.78 16 2 C 0.08 1.45 5.63 86.38 0.49 1.94 16 3 N -0.61 -18.91 2.50 -795.90 -1.99 -20.91 16 4 C 0.54 21.69 6.59 86.45 0.57 22.26 16 5 O -0.49 -26.15 8.97 -4.33 -0.04 -26.19 16 6 C -0.07 -2.32 6.46 40.35 0.26 -2.06 16 7 N -0.53 -11.35 4.81 -183.62 -0.88 -12.24 16 8 H 0.43 6.51 4.40 -92.71 -0.41 6.10 16 9 C 0.03 0.61 11.89 83.48 0.99 1.60 16 10 C -0.22 -5.44 10.76 22.01 0.24 -5.20 16 11 C -0.11 -3.88 6.20 -19.56 -0.12 -4.00 16 12 C -0.07 -2.88 9.71 71.24 0.69 -2.19 16 13 C 0.15 5.23 3.70 46.18 0.17 5.40 16 14 H 0.13 3.28 8.00 -2.39 -0.02 3.26 16 15 C -0.15 -5.82 6.68 31.99 0.21 -5.61 16 16 C 0.16 8.86 4.91 86.86 0.43 9.28 16 17 N -0.59 -33.81 2.26 -691.98 -1.57 -35.37 16 18 C -0.22 -13.63 10.27 84.03 0.86 -12.76 16 19 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.07 -4.55 5.49 84.86 0.47 -4.08 16 21 N -0.95 -62.20 10.09 21.65 0.22 -61.99 16 22 Si 0.97 50.64 29.55 68.60 2.03 52.67 16 23 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 24 H -0.29 -14.92 7.11 99.48 0.71 -14.22 16 25 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 26 C 0.14 6.23 6.00 86.73 0.52 6.75 16 27 H 0.04 0.71 7.43 -2.39 -0.02 0.69 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 1.44 8.11 -2.39 -0.02 1.42 16 31 H 0.09 1.48 4.46 -2.38 -0.01 1.46 16 32 H 0.22 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.03 1.49 7.23 -2.39 -0.02 1.47 16 37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.05 3.14 5.87 -2.39 -0.01 3.13 16 40 H 0.01 0.64 5.33 -6.09 -0.03 0.61 16 41 H 0.24 15.28 8.31 -92.70 -0.77 14.51 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.00 -0.03 7.29 -2.38 -0.02 -0.04 16 Total: -1.00 -86.98 330.44 4.80 -82.19 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.59 Total: 12.30 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 6.44 Total: 9.53 kcal Atomic # 7 Polarization: -126.28 SS G_CDS: -4.22 Total: -130.50 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.04 Total: -26.19 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.03 Total: 52.67 kcal Total: -86.98 4.80 -82.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033815373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.122 kcal (2) G-P(sol) polarization free energy of solvation -86.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds