Wall clock time and date at job start Tue Mar 31 2020 06:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47257 * 2 1 4 4 C 1.34776 * 120.00405 * 94.93502 * 3 2 1 5 5 O 1.21691 * 119.99833 * 185.70088 * 4 3 2 6 6 C 1.46681 * 119.99760 * 5.70002 * 4 3 2 7 7 N 1.37650 * 126.23198 * 250.99674 * 6 4 3 8 8 H 0.97007 * 125.67709 * 0.04431 * 7 6 4 9 9 C 1.35532 * 108.64581 * 179.79554 * 7 6 4 10 10 C 1.35459 * 108.86711 * 0.37222 * 9 7 6 11 11 C 1.37862 * 126.23285 * 71.02367 * 6 4 3 12 12 C 1.50705 * 126.46107 * 359.95657 * 11 6 4 13 13 C 1.46502 * 119.99637 * 274.93029 * 3 2 1 14 14 H 1.09001 * 110.88692 * 356.12428 * 13 3 2 15 15 C 1.55162 * 111.00118 * 120.00146 * 13 3 2 16 16 C 1.54329 * 102.94080 * 153.57530 * 15 13 3 17 17 N 1.47017 * 107.27294 * 337.80878 * 16 15 13 18 18 C 1.36935 * 125.65362 * 178.89480 * 17 16 15 19 19 H 1.07994 * 120.00804 * 180.02562 * 18 17 16 20 20 C 1.38823 * 119.99369 * 0.02562 * 18 17 16 21 21 N 1.31618 * 120.00071 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99669 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47196 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47049 * 120.00480 * 22 20 18 25 25 H 1.48497 * 109.47257 * 240.00164 * 22 20 18 26 26 C 1.47427 * 108.70290 * 358.93701 * 17 16 15 27 27 H 1.09000 * 109.47186 * 300.00597 * 1 2 3 28 28 H 1.08997 * 109.46679 * 60.00063 * 1 2 3 29 29 H 1.08996 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47186 * 239.99403 * 2 1 3 31 31 H 1.09005 * 109.47329 * 119.99420 * 2 1 3 32 32 H 1.07999 * 125.56591 * 180.23285 * 9 7 6 33 33 H 1.08001 * 126.06237 * 179.89158 * 10 9 7 34 34 H 1.08996 * 109.46959 * 270.00248 * 12 11 6 35 35 H 1.09004 * 109.46640 * 29.99830 * 12 11 6 36 36 H 1.09001 * 109.47122 * 149.99858 * 12 11 6 37 37 H 1.08995 * 110.72079 * 271.93769 * 15 13 3 38 38 H 1.08997 * 110.71797 * 35.21685 * 15 13 3 39 39 H 1.09000 * 109.87793 * 97.22114 * 16 15 13 40 40 H 1.08993 * 109.87994 * 218.38793 * 16 15 13 41 41 H 0.96992 * 119.99558 * 179.97438 * 21 20 18 42 42 H 1.08992 * 110.36849 * 265.29264 * 26 17 16 43 43 H 1.09009 * 110.36755 * 142.96875 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3377 1.9831 1.1628 5 8 2.6437 3.1609 1.1743 6 6 2.3163 1.2186 2.4144 7 7 1.3993 1.3501 3.4326 8 1 0.6517 1.9681 3.4443 9 6 1.7117 0.4686 4.4136 10 6 2.8183 -0.2210 4.0467 11 6 3.2113 0.2378 2.7856 12 6 4.3906 -0.2486 1.9832 13 6 2.1597 2.1081 -1.2641 14 1 1.9274 1.4630 -2.1114 15 6 1.2735 3.3817 -1.2753 16 6 2.0158 4.3106 -2.2590 17 7 3.4136 3.8584 -2.3162 18 6 4.3990 4.4073 -3.0925 19 1 5.3990 4.0006 -3.0634 20 6 4.1124 5.4868 -3.9170 21 7 2.8938 5.9828 -3.9521 22 14 5.4568 6.2361 -4.9756 23 1 6.7283 5.5015 -4.7544 24 1 5.0720 6.1390 -6.4065 25 1 5.6387 7.6633 -4.6078 26 6 3.5784 2.7153 -1.3999 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.1684 0.3390 5.3379 33 1 3.3075 -0.9917 4.6239 34 1 4.0799 -1.0766 1.3462 35 1 4.7686 0.5646 1.3636 36 1 5.1762 -0.5854 2.6596 37 1 0.2731 3.1521 -1.6421 38 1 1.2283 3.8287 -0.2823 39 1 1.5630 4.2409 -3.2481 40 1 1.9733 5.3393 -1.9012 41 1 2.6938 6.7372 -4.5280 42 1 3.9397 3.0558 -0.4296 43 1 4.2650 1.9835 -1.8259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033815374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:29 Heat of formation + Delta-G solvation = 45.440997 kcal Electronic energy + Delta-G solvation = -24335.562430 eV Core-core repulsion = 20996.669690 eV Total energy + Delta-G solvation = -3338.892740 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.42655 -39.51507 -36.66283 -35.46588 -32.72868 -32.29012 -30.33064 -29.87411 -28.87945 -27.41037 -26.41740 -24.43897 -23.52173 -22.00093 -20.76251 -20.19638 -19.97976 -18.68644 -17.52178 -16.86151 -16.11970 -15.87455 -14.77014 -14.56434 -14.23607 -14.17595 -13.87816 -13.68430 -13.50402 -13.23120 -13.00235 -12.80576 -12.71924 -12.30662 -12.17257 -11.96715 -11.86354 -11.68429 -11.54881 -11.16572 -10.84703 -10.81058 -10.62478 -10.31072 -10.00474 -9.87597 -9.59303 -9.21670 -8.83636 -8.54879 -8.32897 -8.09274 -6.68842 -5.61275 -2.93637 1.85151 2.51880 2.74666 3.14423 3.46046 3.50604 3.52857 3.54479 4.58093 4.65546 4.93381 4.94845 5.10563 5.15453 5.27946 5.35401 5.50054 5.53347 5.62018 5.66327 5.68510 5.70943 5.75694 5.86072 5.93091 5.95557 6.03989 6.10718 6.23621 6.27626 6.53673 6.63284 6.69762 6.76766 6.79819 6.92714 7.24044 7.36048 7.59651 7.67371 7.76484 7.92774 8.34337 8.39157 9.32188 9.92605 10.59586 11.50609 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.004159 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.305083 B = 6731.027095 C = 7042.686582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.100 3.900 3 N -0.589 5.589 4 C 0.581 3.419 5 O -0.507 6.507 6 C -0.026 4.026 7 N -0.529 5.529 8 H 0.418 0.582 9 C 0.001 3.999 10 C -0.201 4.201 11 C -0.123 4.123 12 C -0.086 4.086 13 C 0.131 3.869 14 H 0.093 0.907 15 C -0.154 4.154 16 C 0.185 3.815 17 N -0.601 5.601 18 C -0.222 4.222 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.923 5.923 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.126 3.874 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.167 0.833 33 H 0.138 0.862 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.250 0.750 42 H 0.044 0.956 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 -16.531 14.236 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.322 5.322 4 C 0.366 3.634 5 O -0.381 6.381 6 C -0.141 4.141 7 N -0.124 5.124 8 H 0.255 0.745 9 C -0.133 4.133 10 C -0.225 4.225 11 C -0.130 4.130 12 C -0.144 4.144 13 C 0.028 3.972 14 H 0.111 0.889 15 C -0.193 4.193 16 C 0.060 3.940 17 N -0.328 5.328 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.001 4.001 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.184 0.816 33 H 0.156 0.844 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.032 -15.599 14.052 21.844 hybrid contribution 0.166 0.665 -0.435 0.812 sum -5.866 -14.934 13.617 21.044 Atomic orbital electron populations 1.22158 0.96094 1.01824 1.02326 1.21661 0.94334 0.82697 1.03602 1.47876 1.64050 1.14045 1.06189 1.17162 0.77975 0.85996 0.82254 1.90909 1.45888 1.15044 1.86306 1.20169 0.97174 1.04338 0.92438 1.41783 1.24386 1.31373 1.14835 0.74526 1.21853 1.00812 0.95678 0.94977 1.20672 0.99354 1.05031 0.97488 1.19788 0.98557 0.97817 0.96884 1.20236 0.94462 1.00943 0.98732 1.22452 0.98711 0.93018 0.83033 0.88858 1.23252 0.97582 0.96362 1.02095 1.21051 0.83156 0.94735 0.95061 1.44318 1.07140 1.33638 1.47709 1.19108 0.89860 1.10378 1.15686 0.90456 1.24788 0.96805 0.98704 1.00331 1.69983 1.17992 1.26914 1.42205 0.86043 0.80820 0.78964 0.79962 1.20539 1.21859 1.21832 1.21863 0.92783 0.90286 0.95171 0.93104 0.92029 0.91753 0.90400 0.89513 0.81606 0.84368 0.91653 0.91814 0.91568 0.92773 0.90810 0.93750 0.93998 0.93944 0.93880 0.94838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.24 37.16 0.38 -1.25 16 2 C 0.10 1.12 6.06 -4.04 -0.02 1.09 16 3 N -0.59 -8.92 2.56 -165.19 -0.42 -9.34 16 4 C 0.58 9.74 6.43 -12.85 -0.08 9.66 16 5 O -0.51 -10.89 13.17 5.20 0.07 -10.82 16 6 C -0.03 -0.35 5.50 -81.98 -0.45 -0.81 16 7 N -0.53 -5.69 6.10 -9.39 -0.06 -5.74 16 8 H 0.42 3.71 8.96 -40.82 -0.37 3.35 16 9 C 0.00 0.01 11.89 -16.91 -0.20 -0.19 16 10 C -0.20 -2.06 10.76 -39.98 -0.43 -2.49 16 11 C -0.12 -1.52 5.10 -104.16 -0.53 -2.05 16 12 C -0.09 -0.97 9.95 36.01 0.36 -0.61 16 13 C 0.13 2.42 3.56 -65.78 -0.23 2.19 16 14 H 0.09 1.60 7.93 -51.93 -0.41 1.19 16 15 C -0.15 -3.16 6.33 -24.89 -0.16 -3.32 16 16 C 0.19 4.81 5.37 -3.06 -0.02 4.79 16 17 N -0.60 -16.38 3.39 -170.07 -0.58 -16.96 16 18 C -0.22 -6.50 10.28 -15.06 -0.15 -6.66 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -28.16 10.31 55.49 0.57 -27.59 16 22 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 C 0.13 2.86 6.58 -2.53 -0.02 2.84 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 31 H 0.09 0.91 5.22 -51.93 -0.27 0.64 16 32 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.06 0.63 7.88 -51.93 -0.41 0.22 16 35 H 0.06 0.85 7.96 -51.93 -0.41 0.43 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.61 6.06 -51.93 -0.31 1.29 16 39 H 0.04 1.23 7.38 -51.93 -0.38 0.85 16 40 H 0.04 1.23 7.51 -51.93 -0.39 0.84 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.04 1.07 5.73 -51.93 -0.30 0.77 16 43 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -34.92 343.69 -8.52 -43.44 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.60 Total: 1.16 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.66 Total: 2.80 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.49 Total: -59.64 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.07 Total: -10.82 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.92 -8.52 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033815374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.880 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds