Wall clock time and date at job start Tue Mar 31 2020 06:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47257 * 2 1 4 4 C 1.34776 * 120.00405 * 94.93502 * 3 2 1 5 5 O 1.21691 * 119.99833 * 185.70088 * 4 3 2 6 6 C 1.46681 * 119.99760 * 5.70002 * 4 3 2 7 7 N 1.37650 * 126.23198 * 250.99674 * 6 4 3 8 8 H 0.97007 * 125.67709 * 0.04431 * 7 6 4 9 9 C 1.35532 * 108.64581 * 179.79554 * 7 6 4 10 10 C 1.35459 * 108.86711 * 0.37222 * 9 7 6 11 11 C 1.37862 * 126.23285 * 71.02367 * 6 4 3 12 12 C 1.50705 * 126.46107 * 359.95657 * 11 6 4 13 13 C 1.46502 * 119.99637 * 274.93029 * 3 2 1 14 14 H 1.09001 * 110.88692 * 356.12428 * 13 3 2 15 15 C 1.55162 * 111.00118 * 120.00146 * 13 3 2 16 16 C 1.54329 * 102.94080 * 153.57530 * 15 13 3 17 17 N 1.47017 * 107.27294 * 337.80878 * 16 15 13 18 18 C 1.36935 * 125.65362 * 178.89480 * 17 16 15 19 19 H 1.07994 * 120.00804 * 180.02562 * 18 17 16 20 20 C 1.38823 * 119.99369 * 0.02562 * 18 17 16 21 21 N 1.31618 * 120.00071 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99669 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47196 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47049 * 120.00480 * 22 20 18 25 25 H 1.48497 * 109.47257 * 240.00164 * 22 20 18 26 26 C 1.47427 * 108.70290 * 358.93701 * 17 16 15 27 27 H 1.09000 * 109.47186 * 300.00597 * 1 2 3 28 28 H 1.08997 * 109.46679 * 60.00063 * 1 2 3 29 29 H 1.08996 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47186 * 239.99403 * 2 1 3 31 31 H 1.09005 * 109.47329 * 119.99420 * 2 1 3 32 32 H 1.07999 * 125.56591 * 180.23285 * 9 7 6 33 33 H 1.08001 * 126.06237 * 179.89158 * 10 9 7 34 34 H 1.08996 * 109.46959 * 270.00248 * 12 11 6 35 35 H 1.09004 * 109.46640 * 29.99830 * 12 11 6 36 36 H 1.09001 * 109.47122 * 149.99858 * 12 11 6 37 37 H 1.08995 * 110.72079 * 271.93769 * 15 13 3 38 38 H 1.08997 * 110.71797 * 35.21685 * 15 13 3 39 39 H 1.09000 * 109.87793 * 97.22114 * 16 15 13 40 40 H 1.08993 * 109.87994 * 218.38793 * 16 15 13 41 41 H 0.96992 * 119.99558 * 179.97438 * 21 20 18 42 42 H 1.08992 * 110.36849 * 265.29264 * 26 17 16 43 43 H 1.09009 * 110.36755 * 142.96875 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3377 1.9831 1.1628 5 8 2.6437 3.1609 1.1743 6 6 2.3163 1.2186 2.4144 7 7 1.3993 1.3501 3.4326 8 1 0.6517 1.9681 3.4443 9 6 1.7117 0.4686 4.4136 10 6 2.8183 -0.2210 4.0467 11 6 3.2113 0.2378 2.7856 12 6 4.3906 -0.2486 1.9832 13 6 2.1597 2.1081 -1.2641 14 1 1.9274 1.4630 -2.1114 15 6 1.2735 3.3817 -1.2753 16 6 2.0158 4.3106 -2.2590 17 7 3.4136 3.8584 -2.3162 18 6 4.3990 4.4073 -3.0925 19 1 5.3990 4.0006 -3.0634 20 6 4.1124 5.4868 -3.9170 21 7 2.8938 5.9828 -3.9521 22 14 5.4568 6.2361 -4.9756 23 1 6.7283 5.5015 -4.7544 24 1 5.0720 6.1390 -6.4065 25 1 5.6387 7.6633 -4.6078 26 6 3.5784 2.7153 -1.3999 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.1684 0.3390 5.3379 33 1 3.3075 -0.9917 4.6239 34 1 4.0799 -1.0766 1.3462 35 1 4.7686 0.5646 1.3636 36 1 5.1762 -0.5854 2.6596 37 1 0.2731 3.1521 -1.6421 38 1 1.2283 3.8287 -0.2823 39 1 1.5630 4.2409 -3.2481 40 1 1.9733 5.3393 -1.9012 41 1 2.6938 6.7372 -4.5280 42 1 3.9397 3.0558 -0.4296 43 1 4.2650 1.9835 -1.8259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033815374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:28 Heat of formation + Delta-G solvation = 22.434928 kcal Electronic energy + Delta-G solvation = -24336.560048 eV Core-core repulsion = 20996.669690 eV Total energy + Delta-G solvation = -3339.890358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.36865 -40.81181 -38.41165 -36.81483 -34.35693 -33.52014 -31.66907 -31.06303 -30.47424 -28.86254 -27.63370 -26.42058 -24.55185 -23.22440 -22.04054 -21.82780 -21.29908 -19.63237 -19.02173 -18.54401 -17.35287 -17.27497 -16.67288 -15.98578 -15.78907 -15.39782 -15.02089 -14.84190 -14.49135 -14.41928 -14.31277 -14.14675 -13.92169 -13.66279 -13.60222 -13.37017 -13.09349 -12.93314 -12.81863 -12.76497 -12.45299 -12.26021 -12.12270 -12.06415 -11.98970 -11.83719 -11.56167 -10.74435 -10.72158 -9.72680 -9.63174 -8.98052 -8.88127 -7.86047 -5.22324 0.90645 1.41836 1.43757 1.46351 1.56655 1.86809 2.04623 2.48663 2.60874 3.31518 3.58915 3.68626 3.89401 4.03160 4.08311 4.22652 4.25982 4.31076 4.38321 4.48684 4.52009 4.64263 4.68787 4.83803 4.85996 4.88837 4.91145 4.97111 4.99139 5.11749 5.14771 5.20292 5.33413 5.41157 5.44593 5.61658 5.65744 5.73265 5.95160 6.08506 6.16874 6.39030 6.62790 7.07415 7.12266 7.74276 8.40311 9.24802 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.004159 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.305083 B = 6731.027095 C = 7042.686582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.582 5.582 4 C 0.582 3.418 5 O -0.568 6.568 6 C -0.064 4.064 7 N -0.528 5.528 8 H 0.424 0.576 9 C 0.025 3.975 10 C -0.215 4.215 11 C -0.124 4.124 12 C -0.086 4.086 13 C 0.151 3.849 14 H 0.117 0.883 15 C -0.137 4.137 16 C 0.195 3.805 17 N -0.622 5.622 18 C -0.244 4.244 19 H 0.081 0.919 20 C -0.067 4.067 21 N -0.952 5.952 22 Si 0.983 3.017 23 H -0.265 1.265 24 H -0.286 1.286 25 H -0.294 1.294 26 C 0.124 3.876 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.208 0.792 33 H 0.162 0.838 34 H 0.083 0.917 35 H 0.033 0.967 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.021 0.979 40 H -0.006 1.006 41 H 0.247 0.753 42 H 0.021 0.979 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 -19.493 15.494 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.025 4.025 3 N -0.313 5.313 4 C 0.370 3.630 5 O -0.446 6.446 6 C -0.178 4.178 7 N -0.123 5.123 8 H 0.262 0.738 9 C -0.109 4.109 10 C -0.239 4.239 11 C -0.132 4.132 12 C -0.144 4.144 13 C 0.047 3.953 14 H 0.135 0.865 15 C -0.176 4.176 16 C 0.070 3.930 17 N -0.348 5.348 18 C -0.373 4.373 19 H 0.099 0.901 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.811 3.189 23 H -0.189 1.189 24 H -0.212 1.212 25 H -0.221 1.221 26 C -0.002 4.002 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.225 0.775 33 H 0.179 0.821 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.012 0.988 41 H 0.056 0.944 42 H 0.039 0.961 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.424 -18.632 15.325 24.965 hybrid contribution 0.297 1.540 -0.710 1.722 sum -6.127 -17.092 14.615 23.308 Atomic orbital electron populations 1.22116 0.94712 1.03377 1.01633 1.21961 0.95381 0.80158 1.04970 1.47886 1.63489 1.15352 1.04557 1.17652 0.76394 0.85372 0.83582 1.90876 1.48596 1.17882 1.87294 1.19745 0.99714 1.05982 0.92376 1.41859 1.24171 1.31783 1.14483 0.73776 1.22569 0.99931 0.93371 0.95072 1.20994 1.00040 1.06029 0.96800 1.20060 0.98072 0.97245 0.97834 1.20266 0.94774 1.00402 0.98927 1.22095 0.94911 0.92757 0.85550 0.86485 1.23026 0.98694 0.96205 0.99719 1.20769 0.83591 0.93703 0.94946 1.44623 1.07228 1.35014 1.47967 1.19513 0.90700 1.10970 1.16111 0.90110 1.25709 0.99257 0.99165 1.01828 1.70212 1.19981 1.27132 1.42821 0.84942 0.78459 0.77570 0.77937 1.18946 1.21232 1.22105 1.21922 0.95882 0.89327 0.93079 0.93647 0.92875 0.89044 0.88704 0.88426 0.77542 0.82092 0.89870 0.94792 0.90021 0.89823 0.92245 0.96065 0.98756 0.94360 0.96132 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.24 71.98 0.74 -1.95 16 2 C 0.10 1.91 6.06 86.38 0.52 2.43 16 3 N -0.58 -17.20 2.56 -794.77 -2.04 -19.24 16 4 C 0.58 19.77 6.43 86.45 0.56 20.32 16 5 O -0.57 -25.63 13.17 -4.32 -0.06 -25.68 16 6 C -0.06 -1.68 5.50 40.35 0.22 -1.46 16 7 N -0.53 -10.28 6.10 -183.62 -1.12 -11.40 16 8 H 0.42 6.90 8.96 -92.70 -0.83 6.07 16 9 C 0.03 0.36 11.89 83.48 0.99 1.35 16 10 C -0.21 -3.67 10.76 22.01 0.24 -3.43 16 11 C -0.12 -2.82 5.10 -19.57 -0.10 -2.92 16 12 C -0.09 -1.82 9.95 71.24 0.71 -1.11 16 13 C 0.15 5.55 3.56 46.39 0.16 5.72 16 14 H 0.12 3.79 7.93 -2.39 -0.02 3.77 16 15 C -0.14 -5.78 6.33 31.79 0.20 -5.58 16 16 C 0.20 10.68 5.37 86.73 0.47 11.14 16 17 N -0.62 -35.22 3.39 -691.99 -2.35 -37.57 16 18 C -0.24 -14.73 10.28 84.04 0.86 -13.87 16 19 H 0.08 4.67 7.83 -2.91 -0.02 4.65 16 20 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 21 N -0.95 -60.41 10.31 21.65 0.22 -60.19 16 22 Si 0.98 48.03 29.55 68.60 2.03 50.06 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 26 C 0.12 5.79 6.58 86.86 0.57 6.36 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.59 8.03 -2.39 -0.02 1.57 16 31 H 0.10 1.78 5.22 -2.38 -0.01 1.77 16 32 H 0.21 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 34 H 0.08 1.42 7.88 -2.39 -0.02 1.40 16 35 H 0.03 0.90 7.96 -2.39 -0.02 0.89 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.06 2.70 6.06 -2.39 -0.01 2.68 16 39 H 0.02 1.24 7.38 -2.39 -0.02 1.22 16 40 H -0.01 -0.37 7.51 -2.39 -0.02 -0.39 16 41 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.02 1.08 5.73 -2.39 -0.01 1.07 16 43 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -80.97 343.69 3.48 -77.49 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.18 Total: 13.09 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 6.61 Total: 13.45 kcal Atomic # 7 Polarization: -123.11 SS G_CDS: -5.28 Total: -128.40 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.06 Total: -25.68 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -80.97 3.48 -77.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033815374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.923 kcal (2) G-P(sol) polarization free energy of solvation -80.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds