Wall clock time and date at job start Tue Mar 31 2020 06:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46510 * 109.47261 * 2 1 4 4 C 1.34770 * 120.00014 * 275.14079 * 3 2 1 5 5 O 1.21633 * 119.99930 * 174.23534 * 4 3 2 6 6 C 1.47266 * 120.00120 * 354.23797 * 4 3 2 7 7 C 1.36772 * 126.94127 * 305.91433 * 6 4 3 8 8 N 1.34658 * 108.39626 * 179.87083 * 7 6 4 9 9 H 0.96996 * 124.85276 * 180.14237 * 8 7 6 10 10 C 1.36454 * 110.29622 * 0.41443 * 8 7 6 11 11 C 1.34486 * 108.85730 * 359.74647 * 10 8 7 12 12 C 1.50697 * 126.83252 * 179.97438 * 11 10 8 13 13 C 1.46499 * 119.99685 * 95.13703 * 3 2 1 14 14 H 1.09000 * 110.91537 * 3.90674 * 13 3 2 15 15 C 1.55159 * 111.00411 * 240.00472 * 13 3 2 16 16 C 1.54321 * 102.93823 * 206.42581 * 15 13 3 17 17 N 1.47016 * 107.27474 * 22.19248 * 16 15 13 18 18 C 1.36947 * 125.64842 * 180.79250 * 17 16 15 19 19 H 1.08000 * 119.99530 * 180.02562 * 18 17 16 20 20 C 1.38808 * 119.99560 * 0.02672 * 18 17 16 21 21 N 1.31612 * 120.00475 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99446 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47546 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47062 * 119.99849 * 22 20 18 25 25 H 1.48500 * 109.47400 * 239.99667 * 22 20 18 26 26 C 1.47424 * 108.70498 * 1.05660 * 17 16 15 27 27 H 1.09003 * 109.46953 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46361 * 299.99385 * 1 2 3 29 29 H 1.08996 * 109.47383 * 59.99682 * 1 2 3 30 30 H 1.09002 * 109.47098 * 240.00664 * 2 1 3 31 31 H 1.09000 * 109.47840 * 120.00508 * 2 1 3 32 32 H 1.08002 * 125.79804 * 359.97438 * 7 6 4 33 33 H 1.07996 * 125.56877 * 179.72903 * 10 8 7 34 34 H 1.08997 * 109.46815 * 270.02322 * 12 11 10 35 35 H 1.08998 * 109.47342 * 30.02342 * 12 11 10 36 36 H 1.08999 * 109.47112 * 150.02686 * 12 11 10 37 37 H 1.08996 * 110.72174 * 88.06131 * 15 13 3 38 38 H 1.09005 * 110.87043 * 324.85671 * 15 13 3 39 39 H 1.08999 * 109.88104 * 262.76795 * 16 15 13 40 40 H 1.09009 * 109.87989 * 141.61005 * 16 15 13 41 41 H 0.97006 * 120.00393 * 180.02562 * 21 20 18 42 42 H 1.09004 * 110.36204 * 94.71131 * 26 17 16 43 43 H 1.08991 * 110.36899 * 217.03431 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1444 2.0515 -1.1624 5 8 2.4488 3.2291 -1.1556 6 6 1.9136 1.3580 -2.4410 7 6 2.5141 0.2072 -2.8720 8 7 2.0261 -0.0962 -4.0899 9 1 2.2880 -0.8683 -4.6153 10 6 1.1150 0.8410 -4.4817 11 6 0.9981 1.7656 -3.5122 12 6 0.1047 2.9791 -3.5241 13 6 2.3697 2.0340 1.2637 14 1 2.2777 1.3397 2.0989 15 6 1.5035 3.3003 1.4951 16 6 2.4024 4.1739 2.3954 17 7 3.7882 3.7260 2.1947 18 6 4.8915 4.2378 2.8243 19 1 5.8710 3.8384 2.6067 20 6 4.7505 5.2696 3.7420 21 7 3.5568 5.7565 4.0067 22 14 6.2554 5.9672 4.6012 23 1 7.4693 5.2517 4.1324 24 1 6.3797 7.4130 4.2859 25 1 6.1135 5.7911 6.0689 26 6 3.7942 2.6390 1.1989 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8935 -0.5139 0.8899 32 1 3.2526 -0.3622 -2.3274 33 1 0.5762 0.8404 -5.4177 34 1 0.6417 3.8212 -3.9608 35 1 -0.7856 2.7691 -4.1169 36 1 -0.1880 3.2248 -2.5034 37 1 0.5762 3.0449 2.0078 38 1 1.2947 3.8057 0.5521 39 1 2.1184 4.0446 3.4397 40 1 2.3064 5.2216 2.1100 41 1 3.4584 6.4779 4.6477 42 1 3.9923 3.0374 0.2037 43 1 4.5380 1.8872 1.4624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034038064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:51 Heat of formation + Delta-G solvation = 48.375133 kcal Electronic energy + Delta-G solvation = -24199.526836 eV Core-core repulsion = 20860.761330 eV Total energy + Delta-G solvation = -3338.765506 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.26711 -39.41619 -36.51503 -35.28676 -32.56794 -32.22244 -30.15931 -29.98894 -28.73306 -26.80928 -26.57584 -24.42994 -23.68687 -21.99111 -20.76435 -19.89000 -19.58175 -18.49219 -17.57112 -16.76500 -16.24887 -15.62108 -14.64138 -14.49713 -14.20220 -14.06380 -13.93248 -13.61117 -13.51755 -13.18504 -12.91844 -12.69341 -12.63382 -12.31625 -12.07185 -11.84413 -11.74889 -11.60188 -11.34842 -11.06042 -10.78969 -10.75399 -10.49678 -10.16205 -9.94838 -9.75908 -9.52476 -8.99228 -8.57784 -8.45276 -8.31485 -8.08547 -6.61523 -5.55452 -2.87554 1.99510 2.43939 3.10930 3.24444 3.49281 3.53569 3.56857 3.60166 4.63792 4.80574 4.86673 5.01598 5.06776 5.26347 5.34046 5.40471 5.49500 5.60208 5.66281 5.74879 5.77948 5.83488 5.85419 5.90304 5.98207 6.03938 6.08591 6.18461 6.24987 6.43372 6.66209 6.72563 6.75102 6.87578 6.89338 6.91548 7.36441 7.40035 7.71776 7.84433 7.89419 8.00649 8.42372 8.72272 9.38214 9.98884 10.66641 11.56300 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026334 B = 0.003995 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.010002 B = 7006.926245 C = 7147.315039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.106 3.894 3 N -0.602 5.602 4 C 0.584 3.416 5 O -0.513 6.513 6 C -0.205 4.205 7 C 0.031 3.969 8 N -0.554 5.554 9 H 0.414 0.586 10 C -0.024 4.024 11 C -0.121 4.121 12 C -0.080 4.080 13 C 0.133 3.867 14 H 0.089 0.911 15 C -0.153 4.153 16 C 0.185 3.815 17 N -0.602 5.602 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.910 3.090 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.126 3.874 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.250 0.750 42 H 0.044 0.956 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.284 -16.736 -15.919 24.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.336 5.336 4 C 0.372 3.628 5 O -0.388 6.388 6 C -0.216 4.216 7 C -0.103 4.103 8 N -0.149 5.149 9 H 0.250 0.750 10 C -0.152 4.152 11 C -0.128 4.128 12 C -0.137 4.137 13 C 0.030 3.970 14 H 0.107 0.893 15 C -0.193 4.193 16 C 0.060 3.940 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.570 5.570 22 Si 0.741 3.259 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.001 4.001 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.187 0.813 33 H 0.183 0.817 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.037 -16.036 -15.829 23.923 hybrid contribution 0.868 -0.093 0.290 0.920 sum -7.169 -16.129 -15.540 23.516 Atomic orbital electron populations 1.22171 0.96211 1.01476 1.02693 1.21580 0.94433 0.83091 1.02626 1.47879 1.65547 1.13721 1.06415 1.17451 0.76889 0.86044 0.82416 1.90834 1.45708 1.15251 1.86996 1.20463 1.05539 0.98557 0.97053 1.21730 1.02474 0.98137 0.87944 1.41416 1.34251 1.23081 1.16126 0.74955 1.21468 0.99719 0.92924 1.01108 1.20484 1.00894 0.98180 0.93239 1.20112 0.96826 0.94262 1.02511 1.22361 0.97202 0.94132 0.83343 0.89318 1.23239 0.97822 0.96584 1.01611 1.21044 0.81949 0.95404 0.95600 1.44332 1.03579 1.38579 1.46375 1.19102 0.86027 1.13263 1.16523 0.90564 1.24776 0.96776 0.99052 1.00069 1.69991 1.20126 1.29281 1.37650 0.86057 0.81930 0.78764 0.79120 1.20614 1.21852 1.21907 1.21861 0.92611 0.90887 0.94734 0.92261 0.92270 0.92334 0.90642 0.90656 0.81284 0.81729 0.91456 0.92277 0.91729 0.92976 0.90538 0.93945 0.94027 0.93986 0.93821 0.95172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.20 37.16 0.38 -1.38 16 2 C 0.11 1.20 5.95 -4.04 -0.02 1.18 16 3 N -0.60 -9.55 2.57 -164.98 -0.42 -9.98 16 4 C 0.58 10.27 6.72 -12.59 -0.08 10.19 16 5 O -0.51 -11.47 13.17 5.25 0.07 -11.40 16 6 C -0.21 -2.85 5.19 -103.35 -0.54 -3.39 16 7 C 0.03 0.32 9.88 -16.84 -0.17 0.15 16 8 N -0.55 -4.19 5.90 -12.84 -0.08 -4.27 16 9 H 0.41 1.59 8.96 -40.82 -0.37 1.22 16 10 C -0.02 -0.22 11.82 -16.82 -0.20 -0.42 16 11 C -0.12 -1.51 6.36 -102.54 -0.65 -2.16 16 12 C -0.08 -0.96 10.35 36.00 0.37 -0.59 16 13 C 0.13 2.57 3.55 -65.78 -0.23 2.33 16 14 H 0.09 1.59 7.80 -51.93 -0.40 1.18 16 15 C -0.15 -3.30 6.32 -24.90 -0.16 -3.46 16 16 C 0.19 4.95 5.37 -3.07 -0.02 4.93 16 17 N -0.60 -16.79 3.39 -170.08 -0.58 -17.37 16 18 C -0.22 -6.58 10.28 -15.06 -0.15 -6.73 16 19 H 0.08 2.20 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.33 5.49 -17.44 -0.10 -0.42 16 21 N -0.92 -28.58 10.31 55.49 0.57 -28.01 16 22 Si 0.91 23.19 29.55 -169.99 -5.02 18.16 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 C 0.13 2.94 6.58 -2.53 -0.02 2.93 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 30 H 0.08 0.72 4.90 -51.93 -0.25 0.46 16 31 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 32 H 0.17 1.34 7.56 -52.49 -0.40 0.95 16 33 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.75 6.07 -51.93 -0.32 1.44 16 39 H 0.04 1.21 7.40 -51.93 -0.38 0.82 16 40 H 0.04 1.25 7.49 -51.92 -0.39 0.86 16 41 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.04 1.11 5.74 -51.93 -0.30 0.82 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -36.68 343.28 -8.43 -45.11 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.56 Total: -0.58 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -1.58 Total: 3.16 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.51 Total: -59.62 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.68 -8.43 -45.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034038064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.486 kcal (2) G-P(sol) polarization free energy of solvation -36.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds