Wall clock time and date at job start Tue Mar 31 2020 06:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46510 * 109.47261 * 2 1 4 4 C 1.34770 * 120.00014 * 275.14079 * 3 2 1 5 5 O 1.21633 * 119.99930 * 174.23534 * 4 3 2 6 6 C 1.47266 * 120.00120 * 354.23797 * 4 3 2 7 7 C 1.36772 * 126.94127 * 305.91433 * 6 4 3 8 8 N 1.34658 * 108.39626 * 179.87083 * 7 6 4 9 9 H 0.96996 * 124.85276 * 180.14237 * 8 7 6 10 10 C 1.36454 * 110.29622 * 0.41443 * 8 7 6 11 11 C 1.34486 * 108.85730 * 359.74647 * 10 8 7 12 12 C 1.50697 * 126.83252 * 179.97438 * 11 10 8 13 13 C 1.46499 * 119.99685 * 95.13703 * 3 2 1 14 14 H 1.09000 * 110.91537 * 3.90674 * 13 3 2 15 15 C 1.55159 * 111.00411 * 240.00472 * 13 3 2 16 16 C 1.54321 * 102.93823 * 206.42581 * 15 13 3 17 17 N 1.47016 * 107.27474 * 22.19248 * 16 15 13 18 18 C 1.36947 * 125.64842 * 180.79250 * 17 16 15 19 19 H 1.08000 * 119.99530 * 180.02562 * 18 17 16 20 20 C 1.38808 * 119.99560 * 0.02672 * 18 17 16 21 21 N 1.31612 * 120.00475 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99446 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47546 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47062 * 119.99849 * 22 20 18 25 25 H 1.48500 * 109.47400 * 239.99667 * 22 20 18 26 26 C 1.47424 * 108.70498 * 1.05660 * 17 16 15 27 27 H 1.09003 * 109.46953 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46361 * 299.99385 * 1 2 3 29 29 H 1.08996 * 109.47383 * 59.99682 * 1 2 3 30 30 H 1.09002 * 109.47098 * 240.00664 * 2 1 3 31 31 H 1.09000 * 109.47840 * 120.00508 * 2 1 3 32 32 H 1.08002 * 125.79804 * 359.97438 * 7 6 4 33 33 H 1.07996 * 125.56877 * 179.72903 * 10 8 7 34 34 H 1.08997 * 109.46815 * 270.02322 * 12 11 10 35 35 H 1.08998 * 109.47342 * 30.02342 * 12 11 10 36 36 H 1.08999 * 109.47112 * 150.02686 * 12 11 10 37 37 H 1.08996 * 110.72174 * 88.06131 * 15 13 3 38 38 H 1.09005 * 110.87043 * 324.85671 * 15 13 3 39 39 H 1.08999 * 109.88104 * 262.76795 * 16 15 13 40 40 H 1.09009 * 109.87989 * 141.61005 * 16 15 13 41 41 H 0.97006 * 120.00393 * 180.02562 * 21 20 18 42 42 H 1.09004 * 110.36204 * 94.71131 * 26 17 16 43 43 H 1.08991 * 110.36899 * 217.03431 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1444 2.0515 -1.1624 5 8 2.4488 3.2291 -1.1556 6 6 1.9136 1.3580 -2.4410 7 6 2.5141 0.2072 -2.8720 8 7 2.0261 -0.0962 -4.0899 9 1 2.2880 -0.8683 -4.6153 10 6 1.1150 0.8410 -4.4817 11 6 0.9981 1.7656 -3.5122 12 6 0.1047 2.9791 -3.5241 13 6 2.3697 2.0340 1.2637 14 1 2.2777 1.3397 2.0989 15 6 1.5035 3.3003 1.4951 16 6 2.4024 4.1739 2.3954 17 7 3.7882 3.7260 2.1947 18 6 4.8915 4.2378 2.8243 19 1 5.8710 3.8384 2.6067 20 6 4.7505 5.2696 3.7420 21 7 3.5568 5.7565 4.0067 22 14 6.2554 5.9672 4.6012 23 1 7.4693 5.2517 4.1324 24 1 6.3797 7.4130 4.2859 25 1 6.1135 5.7911 6.0689 26 6 3.7942 2.6390 1.1989 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8935 -0.5139 0.8899 32 1 3.2526 -0.3622 -2.3274 33 1 0.5762 0.8404 -5.4177 34 1 0.6417 3.8212 -3.9608 35 1 -0.7856 2.7691 -4.1169 36 1 -0.1880 3.2248 -2.5034 37 1 0.5762 3.0449 2.0078 38 1 1.2947 3.8057 0.5521 39 1 2.1184 4.0446 3.4397 40 1 2.3064 5.2216 2.1100 41 1 3.4584 6.4779 4.6477 42 1 3.9923 3.0374 0.2037 43 1 4.5380 1.8872 1.4624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034038064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:51 Heat of formation + Delta-G solvation = 23.361007 kcal Electronic energy + Delta-G solvation = -24200.611530 eV Core-core repulsion = 20860.761330 eV Total energy + Delta-G solvation = -3339.850200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.13647 -40.76446 -38.32839 -36.65013 -34.34369 -33.32175 -31.65637 -31.03961 -30.49315 -28.53715 -27.41197 -26.46788 -24.81748 -23.15191 -22.13270 -21.93688 -20.56584 -19.38342 -18.96112 -18.53901 -17.50687 -17.05861 -16.65307 -15.88170 -15.73337 -15.30173 -15.00836 -14.81020 -14.56762 -14.30723 -14.26597 -14.11914 -13.94546 -13.64039 -13.58681 -13.35884 -13.11806 -12.89910 -12.79557 -12.70411 -12.28762 -12.15507 -12.06666 -12.01425 -11.97293 -11.80520 -11.47933 -10.72233 -10.50431 -9.64522 -9.35823 -9.05637 -8.85187 -7.83861 -5.20413 1.09014 1.44084 1.47261 1.57410 1.58169 1.98896 2.28152 2.50299 2.60932 3.33460 3.71895 3.80397 3.96496 4.09105 4.15331 4.19417 4.29102 4.33616 4.47124 4.53074 4.59371 4.69638 4.70908 4.74387 4.87670 4.90464 4.97691 5.02161 5.03587 5.07596 5.14991 5.22224 5.33127 5.41969 5.42994 5.65598 5.71147 5.83100 5.89468 6.07825 6.19008 6.64032 6.81601 7.09289 7.42912 7.76497 8.43290 9.27058 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026334 B = 0.003995 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.010002 B = 7006.926245 C = 7147.315039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 N -0.597 5.597 4 C 0.582 3.418 5 O -0.577 6.577 6 C -0.249 4.249 7 C 0.052 3.948 8 N -0.532 5.532 9 H 0.438 0.562 10 C 0.002 3.998 11 C -0.162 4.162 12 C -0.075 4.075 13 C 0.153 3.847 14 H 0.113 0.887 15 C -0.138 4.138 16 C 0.197 3.803 17 N -0.622 5.622 18 C -0.244 4.244 19 H 0.082 0.918 20 C -0.069 4.069 21 N -0.953 5.953 22 Si 0.985 3.015 23 H -0.264 1.264 24 H -0.294 1.294 25 H -0.286 1.286 26 C 0.125 3.875 27 H 0.089 0.911 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.195 0.805 33 H 0.202 0.798 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.032 0.968 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.019 0.981 40 H -0.007 1.007 41 H 0.247 0.753 42 H 0.021 0.979 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.055 -20.481 -17.453 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.020 4.020 3 N -0.329 5.329 4 C 0.372 3.628 5 O -0.457 6.457 6 C -0.260 4.260 7 C -0.084 4.084 8 N -0.128 5.128 9 H 0.278 0.722 10 C -0.127 4.127 11 C -0.168 4.168 12 C -0.133 4.133 13 C 0.048 3.952 14 H 0.131 0.869 15 C -0.178 4.178 16 C 0.071 3.929 17 N -0.349 5.349 18 C -0.373 4.373 19 H 0.100 0.900 20 C -0.261 4.261 21 N -0.603 5.603 22 Si 0.812 3.188 23 H -0.189 1.189 24 H -0.221 1.221 25 H -0.212 1.212 26 C -0.001 4.001 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.212 0.788 33 H 0.219 0.781 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.011 0.989 41 H 0.056 0.944 42 H 0.039 0.961 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.817 -19.883 -17.409 27.559 hybrid contribution 0.783 1.039 0.665 1.461 sum -7.035 -18.844 -16.744 26.171 Atomic orbital electron populations 1.22112 0.95499 1.02995 1.01311 1.21939 0.94955 0.80381 1.04775 1.47920 1.64997 1.15351 1.04637 1.18113 0.75276 0.85438 0.83982 1.90797 1.48653 1.18254 1.87993 1.20286 1.08634 1.00829 0.96254 1.21949 1.01441 0.96560 0.88492 1.41433 1.32843 1.23215 1.15273 0.72186 1.21889 0.98531 0.91310 1.00993 1.20655 1.02186 0.99533 0.94440 1.20030 0.98030 0.94304 1.00900 1.22017 0.93573 0.93662 0.85941 0.86881 1.23012 0.98179 0.96898 0.99671 1.20744 0.83043 0.93905 0.95180 1.44648 1.03469 1.39849 1.46926 1.19530 0.86992 1.13857 1.16883 0.90040 1.25732 1.00028 0.99397 1.00974 1.70229 1.22404 1.29545 1.38074 0.84924 0.78612 0.77466 0.77783 1.18868 1.22119 1.21238 1.21925 0.95805 0.90050 0.92347 0.89189 0.93668 0.93746 0.88174 0.88735 0.78794 0.78092 0.93037 0.89346 0.94879 0.90367 0.92441 0.96235 0.98913 0.94394 0.96128 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 10.20 71.98 0.73 -2.25 16 2 C 0.10 1.98 5.95 86.38 0.51 2.49 16 3 N -0.60 -18.51 2.57 -794.12 -2.04 -20.55 16 4 C 0.58 20.84 6.72 86.62 0.58 21.42 16 5 O -0.58 -27.53 13.17 -4.13 -0.05 -27.58 16 6 C -0.25 -6.67 5.19 -19.04 -0.10 -6.76 16 7 C 0.05 0.87 9.88 83.92 0.83 1.70 16 8 N -0.53 -5.61 5.90 -194.55 -1.15 -6.76 16 9 H 0.44 0.94 8.96 -92.71 -0.83 0.11 16 10 C 0.00 0.03 11.82 83.11 0.98 1.01 16 11 C -0.16 -3.84 6.36 -18.52 -0.12 -3.95 16 12 C -0.08 -1.86 10.35 71.23 0.74 -1.12 16 13 C 0.15 5.88 3.55 46.38 0.16 6.05 16 14 H 0.11 3.83 7.80 -2.39 -0.02 3.82 16 15 C -0.14 -6.20 6.32 31.78 0.20 -6.00 16 16 C 0.20 11.15 5.37 86.73 0.47 11.61 16 17 N -0.62 -36.12 3.39 -692.00 -2.35 -38.47 16 18 C -0.24 -14.95 10.28 84.03 0.86 -14.09 16 19 H 0.08 4.77 7.83 -2.91 -0.02 4.74 16 20 C -0.07 -4.21 5.49 84.86 0.47 -3.74 16 21 N -0.95 -61.61 10.31 21.65 0.22 -61.39 16 22 Si 0.98 48.63 29.55 68.60 2.03 50.66 16 23 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 26 C 0.12 5.98 6.58 86.85 0.57 6.55 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.04 0.96 8.06 -2.39 -0.02 0.94 16 30 H 0.10 1.49 4.90 -2.39 -0.01 1.48 16 31 H 0.09 1.54 7.83 -2.39 -0.02 1.53 16 32 H 0.20 2.20 7.56 -2.91 -0.02 2.18 16 33 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.06 2.82 6.07 -2.38 -0.01 2.80 16 39 H 0.02 1.17 7.40 -2.39 -0.02 1.16 16 40 H -0.01 -0.48 7.49 -2.38 -0.02 -0.50 16 41 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 42 H 0.02 1.11 5.74 -2.39 -0.01 1.10 16 43 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -87.29 343.28 3.73 -83.55 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.18 Total: 7.62 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 6.90 Total: 12.92 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -5.32 Total: -127.17 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.05 Total: -27.58 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.66 kcal Total: -87.29 3.73 -83.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034038064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.913 kcal (2) G-P(sol) polarization free energy of solvation -87.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds