Wall clock time and date at job start Tue Mar 31 2020 06:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47115 * 2 1 4 4 C 1.34778 * 120.00068 * 94.89872 * 3 2 1 5 5 O 1.21625 * 119.99628 * 185.70273 * 4 3 2 6 6 C 1.47262 * 120.00173 * 5.69792 * 4 3 2 7 7 C 1.36771 * 126.93998 * 54.35466 * 6 4 3 8 8 N 1.34653 * 108.39968 * 179.97438 * 7 6 4 9 9 H 0.96998 * 124.85745 * 179.97438 * 8 7 6 10 10 C 1.36452 * 110.29668 * 359.97438 * 8 7 6 11 11 C 1.34484 * 108.85530 * 0.23374 * 10 8 7 12 12 C 1.50702 * 126.83602 * 179.75168 * 11 10 8 13 13 C 1.46494 * 119.99724 * 274.89121 * 3 2 1 14 14 H 1.09006 * 110.88966 * 356.12719 * 13 3 2 15 15 C 1.55161 * 111.00211 * 120.00476 * 13 3 2 16 16 C 1.54320 * 102.94483 * 153.57820 * 15 13 3 17 17 N 1.47025 * 107.27258 * 337.80509 * 16 15 13 18 18 C 1.36936 * 125.65405 * 178.99159 * 17 16 15 19 19 H 1.07997 * 120.00017 * 179.97438 * 18 17 16 20 20 C 1.38817 * 119.99440 * 359.97015 * 18 17 16 21 21 N 1.31611 * 120.00100 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99648 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47277 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47290 * 120.00041 * 22 20 18 25 25 H 1.48495 * 109.47242 * 240.00264 * 22 20 18 26 26 C 1.47430 * 108.69944 * 358.94261 * 17 16 15 27 27 H 1.09002 * 109.47093 * 60.00144 * 1 2 3 28 28 H 1.08995 * 109.47408 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47276 * 300.00362 * 1 2 3 30 30 H 1.09000 * 109.47501 * 240.00118 * 2 1 3 31 31 H 1.09002 * 109.47093 * 119.99856 * 2 1 3 32 32 H 1.08007 * 125.80014 * 359.97438 * 7 6 4 33 33 H 1.07995 * 125.57292 * 179.97438 * 10 8 7 34 34 H 1.09002 * 109.46571 * 90.02242 * 12 11 10 35 35 H 1.09001 * 109.47571 * 210.01812 * 12 11 10 36 36 H 1.09000 * 109.47206 * 330.02613 * 12 11 10 37 37 H 1.09004 * 110.71696 * 271.93908 * 15 13 3 38 38 H 1.08998 * 110.72217 * 35.20616 * 15 13 3 39 39 H 1.08998 * 109.88541 * 97.21919 * 16 15 13 40 40 H 1.08997 * 109.88246 * 218.38793 * 16 15 13 41 41 H 0.97008 * 120.00233 * 179.97438 * 21 20 18 42 42 H 1.08999 * 110.36809 * 265.29308 * 26 17 16 43 43 H 1.09002 * 110.36582 * 142.96611 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3369 1.9834 1.1629 5 8 2.6427 3.1605 1.1744 6 6 2.3147 1.2162 2.4197 7 6 2.9751 0.0473 2.6809 8 7 2.6927 -0.3275 3.9430 9 1 3.0368 -1.1252 4.3746 10 6 1.8534 0.5752 4.5283 11 6 1.5770 1.5491 3.6431 12 6 0.6879 2.7456 3.8644 13 6 2.1605 2.1079 -1.2641 14 1 1.9286 1.4626 -2.1115 15 6 1.2743 3.3815 -1.2762 16 6 2.0171 4.3102 -2.2596 17 7 3.4150 3.8580 -2.3158 18 6 4.4013 4.4080 -3.0903 19 1 5.4015 4.0016 -3.0599 20 6 4.1154 5.4878 -3.9145 21 7 2.8967 5.9832 -3.9511 22 14 5.4607 6.2376 -4.9715 23 1 6.7320 5.5029 -4.7496 24 1 5.0771 6.1411 -6.4030 25 1 5.6423 7.6646 -4.6029 26 6 3.5792 2.7150 -1.3992 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6145 -0.4847 1.9919 33 1 1.4701 0.5150 5.5362 34 1 1.2813 3.5716 4.2565 35 1 0.2342 3.0412 2.9185 36 1 -0.0948 2.4895 4.5785 37 1 0.2740 3.1518 -1.6435 38 1 1.2283 3.8287 -0.2832 39 1 1.5650 4.2403 -3.2489 40 1 1.9744 5.3389 -1.9020 41 1 2.6970 6.7380 -4.5268 42 1 3.9399 3.0557 -0.4287 43 1 4.2660 1.9832 -1.8246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034038065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:56 Heat of formation + Delta-G solvation = 48.435197 kcal Electronic energy + Delta-G solvation = -24182.944338 eV Core-core repulsion = 20844.181437 eV Total energy + Delta-G solvation = -3338.762902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.27711 -39.41912 -36.51712 -35.28344 -32.56319 -32.21523 -30.19672 -29.99440 -28.73877 -26.82672 -26.58192 -24.42460 -23.61599 -22.01940 -20.76868 -19.89043 -19.58902 -18.49194 -17.57203 -16.76398 -16.26332 -15.62279 -14.65977 -14.49529 -14.23263 -14.06567 -13.85806 -13.62477 -13.56827 -13.16533 -12.90698 -12.69741 -12.65324 -12.32014 -12.06732 -11.85146 -11.73936 -11.59727 -11.35522 -11.05233 -10.78927 -10.75743 -10.49242 -10.16340 -9.94783 -9.76669 -9.52595 -8.99229 -8.57891 -8.45406 -8.31190 -8.09274 -6.61523 -5.55411 -2.87450 1.98916 2.43562 3.10305 3.23788 3.49293 3.53485 3.56823 3.59687 4.63844 4.79956 4.88031 5.01066 5.06268 5.26070 5.33435 5.40114 5.49903 5.60372 5.66944 5.74667 5.78437 5.82900 5.85092 5.89189 5.98304 6.04690 6.08233 6.17840 6.25139 6.43221 6.66407 6.72022 6.74800 6.87061 6.89134 6.91495 7.35781 7.39968 7.71862 7.84454 7.89485 8.00711 8.42369 8.72046 9.38237 9.98906 10.66748 11.56335 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025882 B = 0.004007 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.566267 B = 6986.910221 C = 7144.225533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 N -0.602 5.602 4 C 0.584 3.416 5 O -0.513 6.513 6 C -0.206 4.206 7 C 0.031 3.969 8 N -0.554 5.554 9 H 0.415 0.585 10 C -0.024 4.024 11 C -0.121 4.121 12 C -0.080 4.080 13 C 0.133 3.867 14 H 0.089 0.911 15 C -0.153 4.153 16 C 0.185 3.815 17 N -0.602 5.602 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.910 3.090 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.126 3.874 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.041 0.959 41 H 0.250 0.750 42 H 0.044 0.956 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 -17.671 16.057 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.021 4.021 3 N -0.335 5.335 4 C 0.371 3.629 5 O -0.388 6.388 6 C -0.216 4.216 7 C -0.103 4.103 8 N -0.149 5.149 9 H 0.251 0.749 10 C -0.152 4.152 11 C -0.128 4.128 12 C -0.137 4.137 13 C 0.030 3.970 14 H 0.107 0.893 15 C -0.193 4.193 16 C 0.060 3.940 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.570 5.570 22 Si 0.741 3.259 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.001 4.001 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.188 0.812 33 H 0.183 0.817 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.421 -16.964 15.971 23.921 hybrid contribution 0.806 -0.073 -0.448 0.925 sum -4.615 -17.037 15.523 23.506 Atomic orbital electron populations 1.22157 0.96217 1.01468 1.02672 1.21623 0.94489 0.83152 1.02792 1.47879 1.65416 1.13806 1.06392 1.17473 0.76894 0.86353 0.82150 1.90832 1.46381 1.15421 1.86148 1.20473 1.07384 0.98080 0.95712 1.21737 1.04050 0.97248 0.87311 1.41416 1.39176 1.22296 1.11983 0.74935 1.21473 1.01141 0.93196 0.99389 1.20489 1.02193 0.98008 0.92111 1.20114 0.97157 0.94477 1.01966 1.22341 0.98377 0.92966 0.83333 0.89342 1.23244 0.97426 0.96414 1.02170 1.21045 0.83098 0.94806 0.95048 1.44329 1.07122 1.33675 1.47735 1.19101 0.89814 1.10297 1.15699 0.90565 1.24778 0.96765 0.98753 1.00392 1.69992 1.17937 1.26896 1.42220 0.86055 0.80843 0.78981 0.79984 1.20615 1.21908 1.21854 1.21863 0.92957 0.90172 0.95096 0.92227 0.92225 0.92457 0.90971 0.90066 0.81250 0.81702 0.91450 0.91730 0.92256 0.92959 0.90527 0.93917 0.94053 0.93989 0.93801 0.95182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 10.24 37.16 0.38 -1.39 16 2 C 0.10 1.17 6.04 -4.04 -0.02 1.14 16 3 N -0.60 -9.56 2.56 -164.98 -0.42 -9.98 16 4 C 0.58 10.27 6.76 -12.59 -0.09 10.19 16 5 O -0.51 -11.47 13.17 5.26 0.07 -11.40 16 6 C -0.21 -2.86 5.20 -103.35 -0.54 -3.40 16 7 C 0.03 0.31 9.78 -16.84 -0.16 0.15 16 8 N -0.55 -4.18 5.90 -12.85 -0.08 -4.26 16 9 H 0.41 1.58 8.96 -40.82 -0.37 1.21 16 10 C -0.02 -0.22 11.82 -16.82 -0.20 -0.41 16 11 C -0.12 -1.51 6.36 -102.54 -0.65 -2.16 16 12 C -0.08 -0.96 10.35 36.01 0.37 -0.58 16 13 C 0.13 2.57 3.56 -65.78 -0.23 2.34 16 14 H 0.09 1.59 7.93 -51.93 -0.41 1.18 16 15 C -0.15 -3.30 6.32 -24.90 -0.16 -3.46 16 16 C 0.19 4.95 5.37 -3.06 -0.02 4.93 16 17 N -0.60 -16.80 3.39 -170.07 -0.58 -17.37 16 18 C -0.22 -6.58 10.28 -15.06 -0.15 -6.73 16 19 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 20 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 21 N -0.92 -28.58 10.31 55.49 0.57 -28.01 16 22 Si 0.91 23.19 29.55 -169.99 -5.02 18.17 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 C 0.13 2.95 6.58 -2.53 -0.02 2.93 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.74 8.03 -51.93 -0.42 0.32 16 31 H 0.08 0.78 4.70 -51.93 -0.24 0.54 16 32 H 0.17 1.34 7.77 -52.48 -0.41 0.93 16 33 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.76 6.06 -51.93 -0.31 1.44 16 39 H 0.04 1.22 7.38 -51.93 -0.38 0.83 16 40 H 0.04 1.24 7.50 -51.93 -0.39 0.85 16 41 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.04 1.12 5.73 -51.93 -0.30 0.82 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -36.70 343.75 -8.44 -45.15 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.58 Total: -0.58 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.58 Total: 3.11 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.50 Total: -59.62 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.70 -8.44 -45.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034038065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.583 kcal (2) G-P(sol) polarization free energy of solvation -36.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds