Wall clock time and date at job start Tue Mar 31 2020 06:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47115 * 2 1 4 4 C 1.34778 * 120.00068 * 94.89872 * 3 2 1 5 5 O 1.21625 * 119.99628 * 185.70273 * 4 3 2 6 6 C 1.47262 * 120.00173 * 5.69792 * 4 3 2 7 7 C 1.36771 * 126.93998 * 54.35466 * 6 4 3 8 8 N 1.34653 * 108.39968 * 179.97438 * 7 6 4 9 9 H 0.96998 * 124.85745 * 179.97438 * 8 7 6 10 10 C 1.36452 * 110.29668 * 359.97438 * 8 7 6 11 11 C 1.34484 * 108.85530 * 0.23374 * 10 8 7 12 12 C 1.50702 * 126.83602 * 179.75168 * 11 10 8 13 13 C 1.46494 * 119.99724 * 274.89121 * 3 2 1 14 14 H 1.09006 * 110.88966 * 356.12719 * 13 3 2 15 15 C 1.55161 * 111.00211 * 120.00476 * 13 3 2 16 16 C 1.54320 * 102.94483 * 153.57820 * 15 13 3 17 17 N 1.47025 * 107.27258 * 337.80509 * 16 15 13 18 18 C 1.36936 * 125.65405 * 178.99159 * 17 16 15 19 19 H 1.07997 * 120.00017 * 179.97438 * 18 17 16 20 20 C 1.38817 * 119.99440 * 359.97015 * 18 17 16 21 21 N 1.31611 * 120.00100 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99648 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47277 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47290 * 120.00041 * 22 20 18 25 25 H 1.48495 * 109.47242 * 240.00264 * 22 20 18 26 26 C 1.47430 * 108.69944 * 358.94261 * 17 16 15 27 27 H 1.09002 * 109.47093 * 60.00144 * 1 2 3 28 28 H 1.08995 * 109.47408 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47276 * 300.00362 * 1 2 3 30 30 H 1.09000 * 109.47501 * 240.00118 * 2 1 3 31 31 H 1.09002 * 109.47093 * 119.99856 * 2 1 3 32 32 H 1.08007 * 125.80014 * 359.97438 * 7 6 4 33 33 H 1.07995 * 125.57292 * 179.97438 * 10 8 7 34 34 H 1.09002 * 109.46571 * 90.02242 * 12 11 10 35 35 H 1.09001 * 109.47571 * 210.01812 * 12 11 10 36 36 H 1.09000 * 109.47206 * 330.02613 * 12 11 10 37 37 H 1.09004 * 110.71696 * 271.93908 * 15 13 3 38 38 H 1.08998 * 110.72217 * 35.20616 * 15 13 3 39 39 H 1.08998 * 109.88541 * 97.21919 * 16 15 13 40 40 H 1.08997 * 109.88246 * 218.38793 * 16 15 13 41 41 H 0.97008 * 120.00233 * 179.97438 * 21 20 18 42 42 H 1.08999 * 110.36809 * 265.29308 * 26 17 16 43 43 H 1.09002 * 110.36582 * 142.96611 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3369 1.9834 1.1629 5 8 2.6427 3.1605 1.1744 6 6 2.3147 1.2162 2.4197 7 6 2.9751 0.0473 2.6809 8 7 2.6927 -0.3275 3.9430 9 1 3.0368 -1.1252 4.3746 10 6 1.8534 0.5752 4.5283 11 6 1.5770 1.5491 3.6431 12 6 0.6879 2.7456 3.8644 13 6 2.1605 2.1079 -1.2641 14 1 1.9286 1.4626 -2.1115 15 6 1.2743 3.3815 -1.2762 16 6 2.0171 4.3102 -2.2596 17 7 3.4150 3.8580 -2.3158 18 6 4.4013 4.4080 -3.0903 19 1 5.4015 4.0016 -3.0599 20 6 4.1154 5.4878 -3.9145 21 7 2.8967 5.9832 -3.9511 22 14 5.4607 6.2376 -4.9715 23 1 6.7320 5.5029 -4.7496 24 1 5.0771 6.1411 -6.4030 25 1 5.6423 7.6646 -4.6029 26 6 3.5792 2.7150 -1.3992 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6145 -0.4847 1.9919 33 1 1.4701 0.5150 5.5362 34 1 1.2813 3.5716 4.2565 35 1 0.2342 3.0412 2.9185 36 1 -0.0948 2.4895 4.5785 37 1 0.2740 3.1518 -1.6435 38 1 1.2283 3.8287 -0.2832 39 1 1.5650 4.2403 -3.2489 40 1 1.9744 5.3389 -1.9020 41 1 2.6970 6.7380 -4.5268 42 1 3.9399 3.0557 -0.4287 43 1 4.2660 1.9832 -1.8246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034038065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:56 Heat of formation + Delta-G solvation = 23.427692 kcal Electronic energy + Delta-G solvation = -24184.028745 eV Core-core repulsion = 20844.181437 eV Total energy + Delta-G solvation = -3339.847309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14548 -40.77136 -38.32957 -36.65519 -34.33125 -33.32619 -31.62735 -31.11745 -30.49044 -28.55483 -27.41534 -26.47623 -24.73319 -23.20285 -22.12538 -21.94245 -20.56816 -19.38285 -18.96758 -18.53813 -17.51649 -17.07429 -16.65302 -15.89838 -15.74571 -15.28907 -15.01930 -14.76791 -14.59603 -14.29949 -14.28620 -14.12325 -13.94859 -13.64018 -13.58920 -13.36867 -13.11869 -12.89645 -12.79469 -12.70762 -12.29945 -12.15306 -12.05794 -12.00546 -11.97332 -11.80438 -11.50555 -10.72248 -10.50714 -9.64502 -9.36657 -9.06041 -8.85337 -7.83880 -5.20391 1.08758 1.44068 1.47268 1.57330 1.57601 1.98355 2.26903 2.50225 2.60449 3.33433 3.71658 3.80692 3.96123 4.08931 4.15664 4.18467 4.28738 4.33185 4.46633 4.52588 4.59508 4.69184 4.70712 4.74295 4.87525 4.90507 4.97559 5.01604 5.03336 5.06797 5.14825 5.22405 5.32537 5.41251 5.42829 5.65425 5.71013 5.82408 5.88796 6.07144 6.18903 6.63807 6.81052 7.09217 7.42397 7.76399 8.43293 9.27038 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025882 B = 0.004007 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.566267 B = 6986.910221 C = 7144.225533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.597 5.597 4 C 0.581 3.419 5 O -0.577 6.577 6 C -0.251 4.251 7 C 0.052 3.948 8 N -0.532 5.532 9 H 0.438 0.562 10 C 0.002 3.998 11 C -0.162 4.162 12 C -0.075 4.075 13 C 0.154 3.846 14 H 0.112 0.888 15 C -0.138 4.138 16 C 0.197 3.803 17 N -0.622 5.622 18 C -0.244 4.244 19 H 0.082 0.918 20 C -0.069 4.069 21 N -0.953 5.953 22 Si 0.985 3.015 23 H -0.264 1.264 24 H -0.286 1.286 25 H -0.294 1.294 26 C 0.125 3.875 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.196 0.804 33 H 0.203 0.797 34 H 0.051 0.949 35 H 0.032 0.968 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.020 0.980 40 H -0.007 1.007 41 H 0.247 0.753 42 H 0.021 0.979 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.195 -21.484 17.330 28.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.328 5.328 4 C 0.371 3.629 5 O -0.457 6.457 6 C -0.261 4.261 7 C -0.085 4.085 8 N -0.128 5.128 9 H 0.278 0.722 10 C -0.127 4.127 11 C -0.168 4.168 12 C -0.133 4.133 13 C 0.049 3.951 14 H 0.130 0.870 15 C -0.177 4.177 16 C 0.071 3.929 17 N -0.349 5.349 18 C -0.373 4.373 19 H 0.100 0.900 20 C -0.261 4.261 21 N -0.602 5.602 22 Si 0.812 3.188 23 H -0.189 1.189 24 H -0.212 1.212 25 H -0.221 1.221 26 C -0.001 4.001 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.213 0.787 33 H 0.220 0.780 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.011 0.989 41 H 0.056 0.944 42 H 0.039 0.961 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.961 -20.881 17.285 27.557 hybrid contribution 0.665 1.073 -0.743 1.465 sum -4.296 -19.808 16.542 26.162 Atomic orbital electron populations 1.22112 0.95533 1.03033 1.01317 1.21976 0.94990 0.80450 1.04899 1.47919 1.64951 1.15339 1.04626 1.18137 0.75295 0.85848 0.83610 1.90795 1.49284 1.18434 1.87158 1.20302 1.10877 1.00164 0.94804 1.21960 1.02486 0.95630 0.88384 1.41436 1.37791 1.22528 1.11005 0.72157 1.21899 0.99353 0.91533 0.99912 1.20665 1.03850 0.99459 0.92861 1.20035 0.97777 0.94512 1.00956 1.21984 0.94616 0.92550 0.85987 0.86990 1.23016 0.98521 0.96610 0.99599 1.20745 0.83677 0.93635 0.94810 1.44644 1.07130 1.35073 1.48048 1.19528 0.90662 1.10941 1.16132 0.90040 1.25734 0.99300 0.99203 1.01905 1.70230 1.20049 1.27119 1.42847 0.84921 0.78407 0.77558 0.77885 1.18871 1.21240 1.22114 1.21926 0.95955 0.89241 0.93003 0.93536 0.89133 0.93886 0.88955 0.87756 0.78740 0.78041 0.93030 0.94854 0.89306 0.90368 0.92409 0.96216 0.98921 0.94394 0.96081 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 10.24 71.98 0.74 -2.29 16 2 C 0.10 1.94 6.04 86.38 0.52 2.46 16 3 N -0.60 -18.54 2.56 -794.13 -2.03 -20.57 16 4 C 0.58 20.84 6.76 86.62 0.59 21.43 16 5 O -0.58 -27.52 13.17 -4.11 -0.05 -27.57 16 6 C -0.25 -6.71 5.20 -19.04 -0.10 -6.81 16 7 C 0.05 0.86 9.78 83.92 0.82 1.69 16 8 N -0.53 -5.59 5.90 -194.56 -1.15 -6.74 16 9 H 0.44 0.91 8.96 -92.71 -0.83 0.08 16 10 C 0.00 0.03 11.82 83.11 0.98 1.01 16 11 C -0.16 -3.84 6.36 -18.52 -0.12 -3.96 16 12 C -0.08 -1.86 10.35 71.24 0.74 -1.12 16 13 C 0.15 5.92 3.56 46.39 0.16 6.08 16 14 H 0.11 3.83 7.93 -2.38 -0.02 3.81 16 15 C -0.14 -6.20 6.32 31.78 0.20 -6.00 16 16 C 0.20 11.16 5.37 86.73 0.47 11.62 16 17 N -0.62 -36.15 3.39 -691.98 -2.35 -38.50 16 18 C -0.24 -14.95 10.28 84.03 0.86 -14.09 16 19 H 0.08 4.77 7.83 -2.91 -0.02 4.74 16 20 C -0.07 -4.21 5.49 84.86 0.47 -3.75 16 21 N -0.95 -61.61 10.31 21.65 0.22 -61.39 16 22 Si 0.98 48.64 29.55 68.60 2.03 50.67 16 23 H -0.26 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 26 C 0.12 5.98 6.58 86.85 0.57 6.56 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.51 8.03 -2.39 -0.02 1.49 16 31 H 0.10 1.60 4.70 -2.39 -0.01 1.59 16 32 H 0.20 2.20 7.77 -2.91 -0.02 2.17 16 33 H 0.20 1.33 8.06 -2.91 -0.02 1.30 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 3.05 8.14 -2.39 -0.02 3.04 16 38 H 0.06 2.83 6.06 -2.39 -0.01 2.82 16 39 H 0.02 1.19 7.38 -2.39 -0.02 1.17 16 40 H -0.01 -0.49 7.50 -2.39 -0.02 -0.51 16 41 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 42 H 0.02 1.14 5.73 -2.39 -0.01 1.12 16 43 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -87.30 343.75 3.75 -83.55 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.18 Total: 7.70 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 6.90 Total: 12.84 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -5.31 Total: -127.19 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.67 kcal Total: -87.30 3.75 -83.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034038065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.983 kcal (2) G-P(sol) polarization free energy of solvation -87.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds