Wall clock time and date at job start Tue Mar 31 2020 07:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35531 * 125.67678 * 2 1 4 4 C 1.35454 * 108.86907 * 180.30394 * 3 2 1 5 5 C 1.39829 * 107.86310 * 359.73676 * 4 3 2 6 6 C 1.37652 * 125.67720 * 179.84886 * 2 1 3 7 7 C 1.46678 * 126.22943 * 359.96422 * 6 2 1 8 8 O 1.21691 * 120.00569 * 4.40948 * 7 6 2 9 9 N 1.34777 * 119.99564 * 184.41012 * 7 6 2 10 10 C 1.46500 * 120.00319 * 174.97927 * 9 7 6 11 11 H 1.09005 * 109.24332 * 324.66309 * 10 9 7 12 12 C 1.54841 * 109.36365 * 205.00151 * 10 9 7 13 13 C 1.50121 * 110.81524 * 200.92654 * 12 10 9 14 14 C 1.52533 * 105.41399 * 97.68404 * 13 12 10 15 15 C 1.46231 * 114.27863 * 270.58927 * 14 13 12 16 16 N 1.50172 * 107.53040 * 58.40652 * 15 14 13 17 17 C 1.36944 * 120.53616 * 109.56375 * 16 15 14 18 18 H 1.07996 * 120.00337 * 172.56744 * 17 16 15 19 19 C 1.38811 * 119.99714 * 352.57568 * 17 16 15 20 20 N 1.31622 * 119.99838 * 319.51836 * 19 17 16 21 21 Si 1.86802 * 120.00027 * 139.52731 * 19 17 16 22 22 H 1.48506 * 109.46801 * 179.97438 * 21 19 17 23 23 H 1.48496 * 109.46986 * 59.99842 * 21 19 17 24 24 H 1.48496 * 109.46823 * 299.99524 * 21 19 17 25 25 C 1.43433 * 118.93137 * 289.84203 * 16 15 14 26 26 H 1.09008 * 109.46856 * 271.26904 * 1 2 3 27 27 H 1.08996 * 109.47244 * 31.26312 * 1 2 3 28 28 H 1.08999 * 109.47139 * 151.27155 * 1 2 3 29 29 H 1.08002 * 125.56465 * 0.08481 * 3 2 1 30 30 H 1.08003 * 126.06548 * 179.69621 * 4 3 2 31 31 H 1.08004 * 126.45692 * 179.97438 * 5 4 3 32 32 H 0.97005 * 120.00077 * 354.98743 * 9 7 6 33 33 H 1.09002 * 109.20833 * 80.58334 * 12 10 9 34 34 H 1.08998 * 109.20554 * 321.27595 * 12 10 9 35 35 H 1.08996 * 110.25536 * 338.71103 * 13 12 10 36 36 H 1.09002 * 110.36899 * 216.71703 * 13 12 10 37 37 H 1.09001 * 108.51789 * 149.34940 * 14 13 12 38 38 H 1.09000 * 108.39746 * 31.74333 * 14 13 12 39 39 H 1.09001 * 109.84841 * 298.90652 * 15 14 13 40 40 H 1.08994 * 109.90256 * 177.94308 * 15 14 13 41 41 H 0.96996 * 120.00473 * 353.55370 * 20 19 17 42 42 H 1.08992 * 108.16157 * 213.03030 * 25 16 15 43 43 H 1.09002 * 108.15382 * 329.60165 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7093 -0.0068 5 6 3.5779 -0.6888 -0.0051 6 6 2.2678 -1.1182 0.0029 7 6 1.8123 -2.5124 0.0074 8 8 0.6245 -2.7648 -0.0723 9 7 2.7093 -3.5141 0.0997 10 6 2.2501 -4.9004 0.2150 11 1 1.3359 -4.9279 0.8081 12 6 3.3418 -5.7463 0.9151 13 6 3.1621 -7.2056 0.6119 14 6 4.1281 -7.5043 -0.5302 15 6 3.5613 -7.3083 -1.8639 16 7 3.1069 -5.8799 -1.9568 17 6 3.7750 -4.9877 -2.7523 18 1 3.3739 -3.9971 -2.9077 19 6 4.9678 -5.3566 -3.3591 20 7 5.8502 -6.0725 -2.6948 21 14 5.3206 -4.8367 -5.1183 22 1 6.6509 -5.3531 -5.5296 23 1 5.3165 -3.3544 -5.2066 24 1 4.2752 -5.3891 -6.0167 25 6 1.9656 -5.4638 -1.1942 26 1 -0.3633 0.0228 1.0275 27 1 -0.3633 0.8784 -0.5333 28 1 -0.3633 -0.9012 -0.4940 29 1 1.9082 2.1236 0.0013 30 1 4.4132 1.3612 -0.0131 31 1 4.4583 -1.3144 -0.0097 32 1 3.6591 -3.3170 0.0899 33 1 3.2781 -5.5934 1.9924 34 1 4.3231 -5.4255 0.5655 35 1 2.1366 -7.4027 0.2999 36 1 3.4125 -7.8081 1.4851 37 1 4.4578 -8.5396 -0.4429 38 1 4.9972 -6.8551 -0.4244 39 1 2.7122 -7.9766 -2.0071 40 1 4.3193 -7.5055 -2.6218 41 1 5.7108 -6.2631 -1.7540 42 1 1.4393 -4.6964 -1.7617 43 1 1.2977 -6.3187 -1.0886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034104284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:23 Heat of formation + Delta-G solvation = 46.538603 kcal Electronic energy + Delta-G solvation = -24492.680578 eV Core-core repulsion = 21153.835434 eV Total energy + Delta-G solvation = -3338.845144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18058 -39.14545 -37.70695 -34.51328 -33.37966 -32.64815 -31.19810 -30.30978 -28.71642 -26.39946 -25.99769 -24.31092 -23.05820 -21.98384 -20.49799 -20.28843 -19.28967 -19.07543 -17.61332 -17.06475 -15.72896 -15.53774 -15.44068 -14.97611 -14.48324 -14.21127 -13.82439 -13.60766 -13.35891 -13.27149 -13.13249 -12.69021 -12.39128 -12.26905 -12.18579 -12.14796 -11.88180 -11.77466 -11.03917 -10.83460 -10.55727 -10.38070 -10.16158 -10.00313 -9.79435 -9.73868 -9.51800 -9.41119 -8.72816 -8.62145 -8.17269 -8.01443 -6.93086 -6.13812 -2.99197 1.70730 2.82384 2.88230 3.54377 3.60747 3.72550 3.76890 3.80469 4.64109 4.86560 5.02508 5.10622 5.17215 5.22877 5.24094 5.33262 5.42263 5.51297 5.54351 5.70102 5.72019 5.95084 5.99787 6.01454 6.20001 6.25509 6.30667 6.36074 6.40915 6.61185 6.70033 6.70556 6.83846 6.89392 6.94104 7.10862 7.12680 7.25220 7.27085 7.31809 7.99086 8.06936 8.56430 8.64719 9.10938 9.88674 10.32725 11.16378 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.005857 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.391517 B = 4779.588733 C = 5910.193513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.414 5.414 3 C 0.003 3.997 4 C -0.208 4.208 5 C -0.141 4.141 6 C -0.043 4.043 7 C 0.585 3.415 8 O -0.565 6.565 9 N -0.689 5.689 10 C 0.118 3.882 11 H 0.074 0.926 12 C -0.112 4.112 13 C -0.110 4.110 14 C -0.136 4.136 15 C 0.130 3.870 16 N -0.586 5.586 17 C -0.351 4.351 18 H 0.064 0.936 19 C -0.016 4.016 20 N -0.902 5.902 21 Si 1.034 2.966 22 H -0.288 1.288 23 H -0.295 1.295 24 H -0.296 1.296 25 C 0.154 3.846 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.165 0.835 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.402 0.598 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.094 0.906 41 H 0.272 0.728 42 H 0.042 0.958 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 7.933 8.406 13.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.087 5.087 3 C -0.132 4.132 4 C -0.232 4.232 5 C -0.167 4.167 6 C -0.156 4.156 7 C 0.373 3.627 8 O -0.447 6.447 9 N -0.338 5.338 10 C 0.010 3.990 11 H 0.092 0.908 12 C -0.150 4.150 13 C -0.148 4.148 14 C -0.175 4.175 15 C 0.006 3.994 16 N -0.308 5.308 17 C -0.478 4.478 18 H 0.082 0.918 19 C -0.218 4.218 20 N -0.544 5.544 21 Si 0.864 3.136 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.224 1.224 25 C 0.023 3.977 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.182 0.818 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.237 0.763 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.265 7.556 7.068 12.095 hybrid contribution -0.547 0.584 1.292 1.520 sum -6.811 8.140 8.360 13.511 Atomic orbital electron populations 1.22261 0.76447 1.05387 1.03442 1.43817 1.06656 1.05033 1.53159 1.21933 0.90791 0.91346 1.09083 1.20792 0.95879 0.95071 1.11460 1.21409 0.94738 0.95442 1.05110 1.20226 0.90385 0.87867 1.17160 1.16912 0.85730 0.83410 0.76663 1.90706 1.16472 1.84964 1.52538 1.45664 1.09602 1.06150 1.72339 1.22794 0.96455 0.79356 1.00380 0.90820 1.21672 0.99756 0.95473 0.98111 1.20939 1.00415 0.95213 0.98220 1.21102 0.99515 1.00183 0.96674 1.20587 0.98066 0.84611 0.96175 1.44377 1.32395 1.05064 1.48929 1.19899 1.05979 0.97448 1.24505 0.91839 1.25369 0.91323 1.00292 1.04785 1.70874 1.31356 1.41224 1.10980 0.83969 0.75616 0.75610 0.78358 1.21380 1.22193 1.22415 1.20617 0.90200 0.97074 0.89824 0.91042 0.90313 0.87499 0.81779 0.84223 0.83835 0.76292 0.93607 0.90900 0.91765 0.92610 0.94207 0.90969 0.95873 0.88752 0.91441 0.93946 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 10.66 59.85 0.64 1.41 16 2 N -0.41 -5.95 3.16 -120.23 -0.38 -6.33 16 3 C 0.00 0.04 11.38 -16.91 -0.19 -0.15 16 4 C -0.21 -2.75 10.81 -39.98 -0.43 -3.18 16 5 C -0.14 -2.17 10.35 -39.12 -0.41 -2.58 16 6 C -0.04 -0.72 6.89 -81.98 -0.56 -1.28 16 7 C 0.59 10.99 7.58 -12.85 -0.10 10.90 16 8 O -0.57 -11.62 14.23 5.20 0.07 -11.55 16 9 N -0.69 -12.58 5.07 -53.45 -0.27 -12.85 16 10 C 0.12 2.17 2.87 -66.22 -0.19 1.98 16 11 H 0.07 1.35 7.65 -51.93 -0.40 0.95 16 12 C -0.11 -1.89 5.23 -27.19 -0.14 -2.04 16 13 C -0.11 -1.81 5.76 -28.40 -0.16 -1.97 16 14 C -0.14 -2.61 4.96 -30.19 -0.15 -2.76 16 15 C 0.13 2.88 5.22 -5.20 -0.03 2.85 16 16 N -0.59 -13.87 2.62 -175.40 -0.46 -14.33 16 17 C -0.35 -9.34 9.46 -15.06 -0.14 -9.48 16 18 H 0.06 1.79 8.04 -52.49 -0.42 1.37 16 19 C -0.02 -0.42 4.53 -17.43 -0.08 -0.50 16 20 N -0.90 -25.18 11.99 55.49 0.67 -24.51 16 21 Si 1.03 24.90 30.06 -169.99 -5.11 19.79 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 25 C 0.15 3.26 4.75 -4.93 -0.02 3.23 16 26 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.11 1.51 6.17 -51.93 -0.32 1.19 16 29 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 31 H 0.14 2.09 7.45 -52.48 -0.39 1.70 16 32 H 0.40 7.15 7.34 -40.82 -0.30 6.85 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.38 6.58 -51.93 -0.34 1.04 16 35 H 0.06 1.06 6.28 -51.93 -0.33 0.73 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.56 4.63 -51.93 -0.24 1.32 16 39 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 40 H 0.09 2.39 5.62 -51.93 -0.29 2.10 16 41 H 0.27 7.37 4.94 -40.82 -0.20 7.17 16 42 H 0.04 1.01 7.69 -51.93 -0.40 0.61 16 43 H 0.04 0.74 6.89 -51.93 -0.36 0.38 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -30.60 333.13 -8.60 -39.20 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.17 Total: 9.15 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.97 Total: -3.58 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.45 Total: -58.03 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.07 Total: -11.55 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.11 Total: 19.79 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.60 -8.60 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034104284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.741 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds