Wall clock time and date at job start Tue Mar 31 2020 07:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35531 * 125.67678 * 2 1 4 4 C 1.35454 * 108.86907 * 180.30394 * 3 2 1 5 5 C 1.39829 * 107.86310 * 359.73676 * 4 3 2 6 6 C 1.37652 * 125.67720 * 179.84886 * 2 1 3 7 7 C 1.46678 * 126.22943 * 359.96422 * 6 2 1 8 8 O 1.21691 * 120.00569 * 4.40948 * 7 6 2 9 9 N 1.34777 * 119.99564 * 184.41012 * 7 6 2 10 10 C 1.46500 * 120.00319 * 174.97927 * 9 7 6 11 11 H 1.09005 * 109.24332 * 324.66309 * 10 9 7 12 12 C 1.54841 * 109.36365 * 205.00151 * 10 9 7 13 13 C 1.50121 * 110.81524 * 200.92654 * 12 10 9 14 14 C 1.52533 * 105.41399 * 97.68404 * 13 12 10 15 15 C 1.46231 * 114.27863 * 270.58927 * 14 13 12 16 16 N 1.50172 * 107.53040 * 58.40652 * 15 14 13 17 17 C 1.36944 * 120.53616 * 109.56375 * 16 15 14 18 18 H 1.07996 * 120.00337 * 172.56744 * 17 16 15 19 19 C 1.38811 * 119.99714 * 352.57568 * 17 16 15 20 20 N 1.31622 * 119.99838 * 319.51836 * 19 17 16 21 21 Si 1.86802 * 120.00027 * 139.52731 * 19 17 16 22 22 H 1.48506 * 109.46801 * 179.97438 * 21 19 17 23 23 H 1.48496 * 109.46986 * 59.99842 * 21 19 17 24 24 H 1.48496 * 109.46823 * 299.99524 * 21 19 17 25 25 C 1.43433 * 118.93137 * 289.84203 * 16 15 14 26 26 H 1.09008 * 109.46856 * 271.26904 * 1 2 3 27 27 H 1.08996 * 109.47244 * 31.26312 * 1 2 3 28 28 H 1.08999 * 109.47139 * 151.27155 * 1 2 3 29 29 H 1.08002 * 125.56465 * 0.08481 * 3 2 1 30 30 H 1.08003 * 126.06548 * 179.69621 * 4 3 2 31 31 H 1.08004 * 126.45692 * 179.97438 * 5 4 3 32 32 H 0.97005 * 120.00077 * 354.98743 * 9 7 6 33 33 H 1.09002 * 109.20833 * 80.58334 * 12 10 9 34 34 H 1.08998 * 109.20554 * 321.27595 * 12 10 9 35 35 H 1.08996 * 110.25536 * 338.71103 * 13 12 10 36 36 H 1.09002 * 110.36899 * 216.71703 * 13 12 10 37 37 H 1.09001 * 108.51789 * 149.34940 * 14 13 12 38 38 H 1.09000 * 108.39746 * 31.74333 * 14 13 12 39 39 H 1.09001 * 109.84841 * 298.90652 * 15 14 13 40 40 H 1.08994 * 109.90256 * 177.94308 * 15 14 13 41 41 H 0.96996 * 120.00473 * 353.55370 * 20 19 17 42 42 H 1.08992 * 108.16157 * 213.03030 * 25 16 15 43 43 H 1.09002 * 108.15382 * 329.60165 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7093 -0.0068 5 6 3.5779 -0.6888 -0.0051 6 6 2.2678 -1.1182 0.0029 7 6 1.8123 -2.5124 0.0074 8 8 0.6245 -2.7648 -0.0723 9 7 2.7093 -3.5141 0.0997 10 6 2.2501 -4.9004 0.2150 11 1 1.3359 -4.9279 0.8081 12 6 3.3418 -5.7463 0.9151 13 6 3.1621 -7.2056 0.6119 14 6 4.1281 -7.5043 -0.5302 15 6 3.5613 -7.3083 -1.8639 16 7 3.1069 -5.8799 -1.9568 17 6 3.7750 -4.9877 -2.7523 18 1 3.3739 -3.9971 -2.9077 19 6 4.9678 -5.3566 -3.3591 20 7 5.8502 -6.0725 -2.6948 21 14 5.3206 -4.8367 -5.1183 22 1 6.6509 -5.3531 -5.5296 23 1 5.3165 -3.3544 -5.2066 24 1 4.2752 -5.3891 -6.0167 25 6 1.9656 -5.4638 -1.1942 26 1 -0.3633 0.0228 1.0275 27 1 -0.3633 0.8784 -0.5333 28 1 -0.3633 -0.9012 -0.4940 29 1 1.9082 2.1236 0.0013 30 1 4.4132 1.3612 -0.0131 31 1 4.4583 -1.3144 -0.0097 32 1 3.6591 -3.3170 0.0899 33 1 3.2781 -5.5934 1.9924 34 1 4.3231 -5.4255 0.5655 35 1 2.1366 -7.4027 0.2999 36 1 3.4125 -7.8081 1.4851 37 1 4.4578 -8.5396 -0.4429 38 1 4.9972 -6.8551 -0.4244 39 1 2.7122 -7.9766 -2.0071 40 1 4.3193 -7.5055 -2.6218 41 1 5.7108 -6.2631 -1.7540 42 1 1.4393 -4.6964 -1.7617 43 1 1.2977 -6.3187 -1.0886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034104284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:22 Heat of formation + Delta-G solvation = 28.472970 kcal Electronic energy + Delta-G solvation = -24493.463963 eV Core-core repulsion = 21153.835434 eV Total energy + Delta-G solvation = -3339.628529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.30766 -40.63918 -39.27603 -36.14228 -34.98574 -33.77545 -32.99429 -31.89598 -29.97100 -27.78734 -27.38239 -25.86153 -24.77952 -23.45298 -22.02474 -21.46778 -20.86737 -20.37033 -18.99956 -18.81208 -17.23388 -16.93894 -16.69409 -16.35342 -16.13972 -15.76690 -15.55535 -15.12763 -14.89822 -14.44405 -14.32624 -14.14307 -13.95933 -13.78261 -13.46976 -13.27928 -13.17629 -12.90600 -12.75414 -12.51922 -12.43892 -12.16773 -11.93444 -11.75419 -11.53531 -11.28293 -11.17915 -10.95262 -10.38934 -10.02955 -9.69692 -9.19657 -8.83550 -8.26048 -5.06472 0.48620 1.58848 1.63563 1.73216 1.82680 1.83468 2.37793 2.50244 2.68030 3.14441 3.46450 3.73975 3.85172 3.97321 4.00632 4.18262 4.24459 4.36308 4.39105 4.42882 4.45463 4.48081 4.54160 4.67577 4.72352 4.74271 4.93314 5.06925 5.12359 5.14177 5.15681 5.26129 5.30716 5.39868 5.49721 5.59889 5.63729 5.82086 5.93227 5.97552 6.34872 6.50667 6.58048 7.11437 7.20668 7.88398 8.32366 9.06394 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.005857 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.391517 B = 4779.588733 C = 5910.193513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.419 5.419 3 C 0.026 3.974 4 C -0.222 4.222 5 C -0.147 4.147 6 C -0.087 4.087 7 C 0.580 3.420 8 O -0.592 6.592 9 N -0.691 5.691 10 C 0.125 3.875 11 H 0.080 0.920 12 C -0.103 4.103 13 C -0.101 4.101 14 C -0.128 4.128 15 C 0.132 3.868 16 N -0.597 5.597 17 C -0.349 4.349 18 H 0.039 0.961 19 C -0.054 4.054 20 N -0.923 5.923 21 Si 1.077 2.923 22 H -0.291 1.291 23 H -0.287 1.287 24 H -0.294 1.294 25 C 0.158 3.842 26 H 0.084 0.916 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.211 0.789 30 H 0.165 0.835 31 H 0.141 0.859 32 H 0.402 0.598 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.038 0.962 40 H 0.061 0.939 41 H 0.271 0.729 42 H 0.008 0.992 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.570 9.177 9.514 14.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.093 5.093 3 C -0.110 4.110 4 C -0.245 4.245 5 C -0.174 4.174 6 C -0.200 4.200 7 C 0.370 3.630 8 O -0.475 6.475 9 N -0.339 5.339 10 C 0.018 3.982 11 H 0.098 0.902 12 C -0.141 4.141 13 C -0.139 4.139 14 C -0.167 4.167 15 C 0.009 3.991 16 N -0.320 5.320 17 C -0.478 4.478 18 H 0.057 0.943 19 C -0.253 4.253 20 N -0.566 5.566 21 Si 0.905 3.095 22 H -0.217 1.217 23 H -0.213 1.213 24 H -0.221 1.221 25 C 0.028 3.972 26 H 0.102 0.898 27 H 0.133 0.867 28 H 0.095 0.905 29 H 0.228 0.772 30 H 0.182 0.818 31 H 0.158 0.842 32 H 0.237 0.763 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.026 0.974 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.727 8.792 8.194 13.773 hybrid contribution -0.465 0.266 0.941 1.083 sum -7.192 9.058 9.136 14.739 Atomic orbital electron populations 1.22375 0.75197 1.05596 1.04478 1.44101 1.07623 1.04837 1.52690 1.22713 0.90213 0.92518 1.05529 1.21165 0.97485 0.94153 1.11694 1.21618 0.94248 0.96956 1.04545 1.20072 0.91504 0.87617 1.20775 1.17295 0.85391 0.84487 0.75868 1.90676 1.17399 1.85583 1.53890 1.45669 1.09609 1.06177 1.72433 1.22608 0.97495 0.79740 0.98391 0.90241 1.21597 0.97607 0.95485 0.99400 1.20931 0.99727 0.95098 0.98141 1.20940 0.99110 1.00610 0.96081 1.20543 0.97678 0.83825 0.97055 1.44403 1.32562 1.05336 1.49685 1.19802 1.05625 0.97077 1.25281 0.94258 1.26203 0.91492 1.00805 1.06847 1.70908 1.31913 1.42573 1.11212 0.83346 0.75176 0.75712 0.75232 1.21675 1.21349 1.22147 1.20592 0.89225 0.96613 0.90753 0.89759 0.86655 0.90508 0.77239 0.81774 0.84157 0.76264 0.90860 0.93185 0.91359 0.89331 0.92450 0.93507 0.94429 0.92057 0.91636 0.97376 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.41 10.66 127.77 1.36 2.77 16 2 N -0.42 -11.46 3.16 -534.31 -1.69 -13.15 16 3 C 0.03 0.55 11.38 83.48 0.95 1.50 16 4 C -0.22 -5.39 10.81 22.01 0.24 -5.15 16 5 C -0.15 -4.50 10.35 22.57 0.23 -4.27 16 6 C -0.09 -2.94 6.89 40.35 0.28 -2.66 16 7 C 0.58 22.48 7.58 86.45 0.66 23.14 16 8 O -0.59 -25.17 14.23 -4.32 -0.06 -25.23 16 9 N -0.69 -25.98 5.07 -441.25 -2.24 -28.22 16 10 C 0.13 4.62 2.87 46.10 0.13 4.75 16 11 H 0.08 2.86 7.65 -2.38 -0.02 2.84 16 12 C -0.10 -3.35 5.23 30.30 0.16 -3.19 16 13 C -0.10 -3.10 5.76 29.51 0.17 -2.93 16 14 C -0.13 -4.84 4.96 28.36 0.14 -4.70 16 15 C 0.13 5.91 5.22 83.58 0.44 6.35 16 16 N -0.60 -28.87 2.62 -708.86 -1.86 -30.72 16 17 C -0.35 -19.17 9.46 84.03 0.80 -18.37 16 18 H 0.04 2.32 8.04 -2.91 -0.02 2.29 16 19 C -0.05 -3.00 4.53 84.86 0.38 -2.62 16 20 N -0.92 -52.54 11.99 21.65 0.26 -52.28 16 21 Si 1.08 51.36 30.06 68.60 2.06 53.43 16 22 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 25 C 0.16 6.81 4.75 87.42 0.41 7.23 16 26 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.12 1.63 8.14 -2.39 -0.02 1.62 16 28 H 0.08 2.20 6.17 -2.39 -0.01 2.18 16 29 H 0.21 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 31 H 0.14 4.21 7.45 -2.91 -0.02 4.19 16 32 H 0.40 14.91 7.34 -92.70 -0.68 14.23 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.89 6.58 -2.39 -0.02 1.88 16 35 H 0.07 2.07 6.28 -2.39 -0.02 2.05 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.05 2.03 4.63 -2.39 -0.01 2.02 16 39 H 0.04 1.54 8.13 -2.39 -0.02 1.52 16 40 H 0.06 3.16 5.62 -2.39 -0.01 3.15 16 41 H 0.27 15.04 4.94 -92.71 -0.46 14.58 16 42 H 0.01 0.39 7.69 -2.39 -0.02 0.38 16 43 H 0.05 2.00 6.89 -2.39 -0.02 1.98 16 Total: -1.00 -68.52 333.13 3.48 -65.04 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.65 Total: 29.29 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 6.35 Total: 1.84 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -5.52 Total: -124.36 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.06 Total: -25.23 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.06 Total: 53.43 kcal Total: -68.52 3.48 -65.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034104284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.510 kcal (2) G-P(sol) polarization free energy of solvation -68.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds