Wall clock time and date at job start Tue Mar 31 2020 07:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36450 * 124.84941 * 2 1 4 4 C 1.34485 * 108.85471 * 179.97438 * 3 2 1 5 5 C 1.46684 * 106.33295 * 359.75428 * 4 3 2 6 6 C 1.47271 * 126.94148 * 180.30178 * 5 4 3 7 7 O 1.21619 * 119.99620 * 180.11320 * 6 5 4 8 8 N 1.34770 * 119.99932 * 0.11926 * 6 5 4 9 9 C 1.46497 * 120.00078 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.36405 * 34.99611 * 9 8 6 11 11 C 1.50878 * 109.37072 * 154.73968 * 9 8 6 12 12 C 1.52723 * 109.27548 * 212.17771 * 11 9 8 13 13 C 1.47092 * 114.22971 * 274.82973 * 12 11 9 14 14 C 1.54866 * 110.32067 * 62.83127 * 13 12 11 15 15 N 1.44572 * 109.60604 * 288.73570 * 14 13 12 16 16 C 1.36933 * 118.64492 * 270.70672 * 15 14 13 17 17 H 1.07995 * 120.00186 * 26.51305 * 16 15 14 18 18 C 1.38817 * 120.00035 * 206.52416 * 16 15 14 19 19 N 1.31619 * 119.99994 * 15.66397 * 18 16 15 20 20 Si 1.86803 * 119.99961 * 195.66684 * 18 16 15 21 21 H 1.48496 * 109.47008 * 59.99672 * 20 18 16 22 22 H 1.48497 * 109.46981 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46876 * 299.99662 * 20 18 16 24 24 C 1.47606 * 122.71280 * 90.72319 * 15 14 13 25 25 C 1.34658 * 124.85558 * 179.97438 * 2 1 3 26 26 H 1.08992 * 109.47387 * 270.00250 * 1 2 3 27 27 H 1.08998 * 109.46969 * 30.00928 * 1 2 3 28 28 H 1.09001 * 109.46645 * 149.99900 * 1 2 3 29 29 H 1.08003 * 125.57115 * 359.97438 * 3 2 1 30 30 H 1.08007 * 126.82908 * 179.97438 * 4 3 2 31 31 H 0.97005 * 120.00491 * 359.97438 * 8 6 5 32 32 H 1.08995 * 109.48862 * 332.04759 * 11 9 8 33 33 H 1.09001 * 109.49093 * 92.11434 * 11 9 8 34 34 H 1.09002 * 108.53681 * 153.62715 * 12 11 9 35 35 H 1.08997 * 108.46925 * 35.98918 * 12 11 9 36 36 H 1.09000 * 109.33022 * 302.57640 * 13 12 11 37 37 H 1.08997 * 109.18808 * 183.00451 * 13 12 11 38 38 H 1.08998 * 109.45321 * 168.69160 * 14 13 12 39 39 H 1.09004 * 109.44796 * 48.77340 * 14 13 12 40 40 H 0.97003 * 120.00107 * 180.02562 * 19 18 16 41 41 H 1.09003 * 108.94968 * 197.18404 * 24 15 14 42 42 H 1.08998 * 108.95220 * 78.55462 * 24 15 14 43 43 H 1.07998 * 125.79540 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7492 0.0006 5 6 3.5461 -0.7176 0.0070 6 6 4.7284 -1.5957 0.0161 7 8 4.5885 -2.8038 0.0186 8 7 5.9652 -1.0605 0.0217 9 6 7.1413 -1.9339 0.0301 10 1 6.9324 -2.8271 -0.5588 11 6 8.3139 -1.2003 -0.5725 12 6 9.2192 -2.1995 -1.2898 13 6 10.2008 -2.8601 -0.4160 14 6 9.4783 -3.7029 0.6638 15 7 8.8511 -2.8245 1.6256 16 6 9.5737 -2.4239 2.7176 17 1 10.6515 -2.3801 2.6655 18 6 8.9208 -2.0744 3.8918 19 7 7.6610 -2.4118 4.0698 20 14 9.8300 -1.1252 5.2191 21 1 10.2966 0.1724 4.6680 22 1 8.9170 -0.8768 6.3635 23 1 10.9990 -1.9161 5.6805 24 6 7.4639 -2.3418 1.4792 25 6 2.2346 -1.1050 0.0005 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5140 28 1 -0.3633 -0.8900 -0.5139 29 1 1.8828 2.1374 -0.0004 30 1 4.3981 1.4019 0.0003 31 1 6.0769 -0.0969 0.0194 32 1 7.9520 -0.4606 -1.2866 33 1 8.8746 -0.7000 0.2171 34 1 9.7568 -1.6750 -2.0797 35 1 8.5933 -2.9651 -1.7482 36 1 10.8179 -2.1042 0.0697 37 1 10.8348 -3.5114 -1.0176 38 1 10.2025 -4.3396 1.1720 39 1 8.7182 -4.3246 0.1905 40 1 7.2047 -2.1672 4.8901 41 1 7.3185 -1.4797 2.1302 42 1 6.7796 -3.1333 1.7847 43 1 1.8767 -2.1240 0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034162608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:35 Heat of formation + Delta-G solvation = 36.125038 kcal Electronic energy + Delta-G solvation = -23771.135356 eV Core-core repulsion = 20431.838645 eV Total energy + Delta-G solvation = -3339.296710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.13733 -38.99181 -37.34191 -34.16415 -33.41033 -32.81439 -30.66848 -29.90861 -29.02366 -26.72634 -25.84840 -24.15519 -23.28840 -21.89456 -20.18863 -20.01244 -19.19703 -18.99323 -17.70763 -16.52674 -15.50853 -15.48415 -15.43270 -15.13102 -14.27244 -14.13709 -13.83371 -13.73667 -13.25575 -13.10699 -13.05980 -12.69166 -12.52710 -12.35994 -12.30333 -11.99129 -11.90855 -11.18654 -11.02885 -10.88406 -10.61395 -10.33798 -10.16441 -10.02825 -9.85661 -9.67564 -9.41367 -9.27639 -8.60954 -8.39364 -8.30690 -8.12611 -6.53895 -5.66185 -3.11359 2.00163 2.48674 2.78321 3.43226 3.49135 3.49969 3.90238 4.08265 4.53087 4.58813 4.86990 4.87935 5.02712 5.12255 5.31994 5.44583 5.47375 5.54267 5.57464 5.74871 5.84692 5.94571 6.02182 6.14855 6.18409 6.36970 6.44168 6.59520 6.73868 6.76773 6.78337 6.80204 6.93803 7.02812 7.04582 7.18576 7.20683 7.21741 7.55862 7.87660 7.96235 8.23913 8.57507 8.94290 9.34422 10.02004 10.47590 11.39683 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.004576 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.193951 B = 6117.556718 C = 7187.614052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.452 5.452 3 C -0.023 4.023 4 C -0.168 4.168 5 C -0.223 4.223 6 C 0.587 3.413 7 O -0.554 6.554 8 N -0.712 5.712 9 C 0.121 3.879 10 H 0.072 0.928 11 C -0.115 4.115 12 C -0.098 4.098 13 C -0.147 4.147 14 C 0.155 3.845 15 N -0.587 5.587 16 C -0.260 4.260 17 H 0.065 0.935 18 C 0.005 3.995 19 N -0.899 5.899 20 Si 0.899 3.101 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.283 1.283 24 C 0.175 3.825 25 C 0.067 3.933 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.164 0.836 30 H 0.145 0.855 31 H 0.394 0.606 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.032 0.968 40 H 0.253 0.747 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.437 7.896 -11.026 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.128 5.128 3 C -0.149 4.149 4 C -0.192 4.192 5 C -0.233 4.233 6 C 0.375 3.625 7 O -0.433 6.433 8 N -0.362 5.362 9 C 0.016 3.984 10 H 0.090 0.910 11 C -0.153 4.153 12 C -0.136 4.136 13 C -0.188 4.188 14 C 0.026 3.974 15 N -0.309 5.309 16 C -0.390 4.390 17 H 0.083 0.917 18 C -0.194 4.194 19 N -0.543 5.543 20 Si 0.729 3.271 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.209 1.209 24 C 0.049 3.951 25 C -0.067 4.067 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.181 0.819 30 H 0.162 0.838 31 H 0.227 0.773 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.049 0.951 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.019 7.059 -10.874 17.678 hybrid contribution 0.409 1.131 0.840 1.467 sum -11.610 8.190 -10.033 17.394 Atomic orbital electron populations 1.22072 0.77213 1.04380 1.03434 1.43574 1.06566 1.05978 1.56663 1.21678 0.90630 0.91121 1.11502 1.22064 0.96107 0.93442 1.07603 1.20519 0.92847 0.93330 1.16556 1.17315 0.82446 0.87006 0.75709 1.90753 1.86528 1.14718 1.51332 1.45896 1.05511 1.09868 1.74925 1.21706 0.83066 0.92564 1.01071 0.91009 1.21307 0.96455 0.97911 0.99645 1.20251 0.97695 0.97904 0.97769 1.21506 0.98247 1.00363 0.98642 1.20728 0.95124 0.91271 0.90233 1.43540 1.11627 1.52744 1.22968 1.19152 0.90632 1.39866 0.89314 0.91734 1.25049 0.96404 1.01004 0.96914 1.70094 1.10622 1.47430 1.26137 0.86436 0.78883 0.80348 0.81481 1.21136 1.21766 1.20942 1.21314 0.84799 0.99480 0.89509 1.21771 0.89916 0.91619 1.03418 0.90776 0.89826 0.89724 0.81867 0.83770 0.77288 0.93173 0.90157 0.93826 0.93239 0.92125 0.93554 0.93671 0.94934 0.93695 0.90534 0.95103 0.80936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 11.04 59.85 0.66 1.08 16 2 N -0.45 -4.77 3.09 -124.54 -0.38 -5.15 16 3 C -0.02 -0.24 11.34 -16.82 -0.19 -0.44 16 4 C -0.17 -2.16 10.56 -37.50 -0.40 -2.56 16 5 C -0.22 -3.56 6.29 -103.35 -0.65 -4.21 16 6 C 0.59 11.51 7.77 -12.59 -0.10 11.41 16 7 O -0.55 -12.91 16.57 5.26 0.09 -12.82 16 8 N -0.71 -13.08 4.97 -55.49 -0.28 -13.35 16 9 C 0.12 2.48 2.27 -68.50 -0.16 2.33 16 10 H 0.07 1.58 6.73 -51.93 -0.35 1.23 16 11 C -0.12 -2.06 5.07 -27.94 -0.14 -2.20 16 12 C -0.10 -1.66 5.17 -29.71 -0.15 -1.81 16 13 C -0.15 -2.68 5.74 -28.58 -0.16 -2.85 16 14 C 0.15 3.38 5.65 -4.09 -0.02 3.36 16 15 N -0.59 -15.00 2.27 -172.09 -0.39 -15.39 16 16 C -0.26 -7.20 9.44 -15.06 -0.14 -7.34 16 17 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 18 C 0.01 0.15 4.87 -17.43 -0.08 0.06 16 19 N -0.90 -26.98 11.01 55.49 0.61 -26.37 16 20 Si 0.90 22.04 29.58 -169.99 -5.03 17.01 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.18 4.43 4.25 -2.94 -0.01 4.42 16 25 C 0.07 0.92 11.12 -16.85 -0.19 0.73 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.33 8.13 -51.93 -0.42 -0.10 16 28 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 29 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 30 H 0.14 1.59 7.70 -52.48 -0.40 1.18 16 31 H 0.39 6.11 7.67 -40.82 -0.31 5.80 16 32 H 0.05 0.77 7.94 -51.93 -0.41 0.36 16 33 H 0.08 1.61 7.48 -51.93 -0.39 1.22 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.83 7.35 -51.93 -0.38 0.45 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.99 7.99 -51.93 -0.41 0.58 16 39 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 40 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.08 2.13 6.31 -51.93 -0.33 1.80 16 42 H 0.03 0.91 8.03 -51.93 -0.42 0.49 16 43 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 345.77 15.07 5.21 5.21 Total: -1.00 -34.58 345.77 -8.67 -43.24 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.76 Total: 5.63 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.74 Total: 1.99 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.44 Total: -60.26 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.58 -8.67 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034162608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.365 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds