Wall clock time and date at job start Tue Mar 31 2020 07:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36450 * 124.84941 * 2 1 4 4 C 1.34485 * 108.85471 * 179.97438 * 3 2 1 5 5 C 1.46684 * 106.33295 * 359.75428 * 4 3 2 6 6 C 1.47271 * 126.94148 * 180.30178 * 5 4 3 7 7 O 1.21619 * 119.99620 * 180.11320 * 6 5 4 8 8 N 1.34770 * 119.99932 * 0.11926 * 6 5 4 9 9 C 1.46497 * 120.00078 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.36405 * 34.99611 * 9 8 6 11 11 C 1.50878 * 109.37072 * 154.73968 * 9 8 6 12 12 C 1.52723 * 109.27548 * 212.17771 * 11 9 8 13 13 C 1.47092 * 114.22971 * 274.82973 * 12 11 9 14 14 C 1.54866 * 110.32067 * 62.83127 * 13 12 11 15 15 N 1.44572 * 109.60604 * 288.73570 * 14 13 12 16 16 C 1.36933 * 118.64492 * 270.70672 * 15 14 13 17 17 H 1.07995 * 120.00186 * 26.51305 * 16 15 14 18 18 C 1.38817 * 120.00035 * 206.52416 * 16 15 14 19 19 N 1.31619 * 119.99994 * 15.66397 * 18 16 15 20 20 Si 1.86803 * 119.99961 * 195.66684 * 18 16 15 21 21 H 1.48496 * 109.47008 * 59.99672 * 20 18 16 22 22 H 1.48497 * 109.46981 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46876 * 299.99662 * 20 18 16 24 24 C 1.47606 * 122.71280 * 90.72319 * 15 14 13 25 25 C 1.34658 * 124.85558 * 179.97438 * 2 1 3 26 26 H 1.08992 * 109.47387 * 270.00250 * 1 2 3 27 27 H 1.08998 * 109.46969 * 30.00928 * 1 2 3 28 28 H 1.09001 * 109.46645 * 149.99900 * 1 2 3 29 29 H 1.08003 * 125.57115 * 359.97438 * 3 2 1 30 30 H 1.08007 * 126.82908 * 179.97438 * 4 3 2 31 31 H 0.97005 * 120.00491 * 359.97438 * 8 6 5 32 32 H 1.08995 * 109.48862 * 332.04759 * 11 9 8 33 33 H 1.09001 * 109.49093 * 92.11434 * 11 9 8 34 34 H 1.09002 * 108.53681 * 153.62715 * 12 11 9 35 35 H 1.08997 * 108.46925 * 35.98918 * 12 11 9 36 36 H 1.09000 * 109.33022 * 302.57640 * 13 12 11 37 37 H 1.08997 * 109.18808 * 183.00451 * 13 12 11 38 38 H 1.08998 * 109.45321 * 168.69160 * 14 13 12 39 39 H 1.09004 * 109.44796 * 48.77340 * 14 13 12 40 40 H 0.97003 * 120.00107 * 180.02562 * 19 18 16 41 41 H 1.09003 * 108.94968 * 197.18404 * 24 15 14 42 42 H 1.08998 * 108.95220 * 78.55462 * 24 15 14 43 43 H 1.07998 * 125.79540 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7492 0.0006 5 6 3.5461 -0.7176 0.0070 6 6 4.7284 -1.5957 0.0161 7 8 4.5885 -2.8038 0.0186 8 7 5.9652 -1.0605 0.0217 9 6 7.1413 -1.9339 0.0301 10 1 6.9324 -2.8271 -0.5588 11 6 8.3139 -1.2003 -0.5725 12 6 9.2192 -2.1995 -1.2898 13 6 10.2008 -2.8601 -0.4160 14 6 9.4783 -3.7029 0.6638 15 7 8.8511 -2.8245 1.6256 16 6 9.5737 -2.4239 2.7176 17 1 10.6515 -2.3801 2.6655 18 6 8.9208 -2.0744 3.8918 19 7 7.6610 -2.4118 4.0698 20 14 9.8300 -1.1252 5.2191 21 1 10.2966 0.1724 4.6680 22 1 8.9170 -0.8768 6.3635 23 1 10.9990 -1.9161 5.6805 24 6 7.4639 -2.3418 1.4792 25 6 2.2346 -1.1050 0.0005 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5140 28 1 -0.3633 -0.8900 -0.5139 29 1 1.8828 2.1374 -0.0004 30 1 4.3981 1.4019 0.0003 31 1 6.0769 -0.0969 0.0194 32 1 7.9520 -0.4606 -1.2866 33 1 8.8746 -0.7000 0.2171 34 1 9.7568 -1.6750 -2.0797 35 1 8.5933 -2.9651 -1.7482 36 1 10.8179 -2.1042 0.0697 37 1 10.8348 -3.5114 -1.0176 38 1 10.2025 -4.3396 1.1720 39 1 8.7182 -4.3246 0.1905 40 1 7.2047 -2.1672 4.8901 41 1 7.3185 -1.4797 2.1302 42 1 6.7796 -3.1333 1.7847 43 1 1.8767 -2.1240 0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034162608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:35 Heat of formation + Delta-G solvation = 13.610379 kcal Electronic energy + Delta-G solvation = -23772.111665 eV Core-core repulsion = 20431.838645 eV Total energy + Delta-G solvation = -3340.273019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10367 -40.56836 -39.01793 -35.96166 -35.14598 -33.70492 -32.66360 -31.48637 -30.03221 -28.00413 -27.38738 -25.89261 -24.95824 -23.30845 -21.56093 -21.29159 -20.72891 -20.39292 -18.78626 -18.56796 -17.19833 -16.93278 -16.70889 -16.27607 -15.91696 -15.62775 -15.42207 -15.04959 -14.96283 -14.53232 -14.16128 -14.06231 -13.88709 -13.75748 -13.27179 -13.06489 -13.01903 -12.94792 -12.87736 -12.74146 -12.42347 -12.18027 -12.03779 -11.83950 -11.51780 -11.38794 -11.13990 -10.87653 -10.47151 -9.99946 -9.47709 -9.26380 -8.64747 -7.82096 -5.31631 0.81148 1.46390 1.48902 1.55813 1.56114 1.95154 2.45450 2.57259 2.68576 3.30105 3.69322 3.96579 4.00755 4.04621 4.09800 4.10732 4.31808 4.34845 4.46687 4.48227 4.48647 4.62662 4.67978 4.75582 4.86284 4.96120 5.03965 5.09601 5.13598 5.20662 5.30414 5.32576 5.45861 5.49342 5.60240 5.65273 5.70865 5.78276 5.85751 6.08834 6.39340 6.40945 6.78377 7.17742 7.45151 7.94595 8.36274 9.21846 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.004576 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.193951 B = 6117.556718 C = 7187.614052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.443 5.443 3 C -0.005 4.005 4 C -0.187 4.187 5 C -0.265 4.265 6 C 0.579 3.421 7 O -0.605 6.605 8 N -0.705 5.705 9 C 0.137 3.863 10 H 0.055 0.945 11 C -0.106 4.106 12 C -0.100 4.100 13 C -0.131 4.131 14 C 0.145 3.855 15 N -0.601 5.601 16 C -0.265 4.265 17 H 0.072 0.928 18 C -0.052 4.052 19 N -0.939 5.939 20 Si 0.968 3.032 21 H -0.273 1.273 22 H -0.298 1.298 23 H -0.275 1.275 24 C 0.198 3.802 25 C 0.063 3.937 26 H 0.084 0.916 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.207 0.793 30 H 0.158 0.842 31 H 0.409 0.591 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.027 0.973 40 H 0.246 0.754 41 H 0.046 0.954 42 H -0.030 1.030 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.544 10.567 -12.642 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.118 5.118 3 C -0.132 4.132 4 C -0.210 4.210 5 C -0.275 4.275 6 C 0.370 3.630 7 O -0.489 6.489 8 N -0.355 5.355 9 C 0.031 3.969 10 H 0.074 0.926 11 C -0.144 4.144 12 C -0.138 4.138 13 C -0.171 4.171 14 C 0.019 3.981 15 N -0.323 5.323 16 C -0.395 4.395 17 H 0.090 0.910 18 C -0.247 4.247 19 N -0.585 5.585 20 Si 0.796 3.204 21 H -0.199 1.199 22 H -0.225 1.225 23 H -0.200 1.200 24 C 0.071 3.929 25 C -0.074 4.074 26 H 0.103 0.897 27 H 0.131 0.869 28 H 0.114 0.886 29 H 0.224 0.776 30 H 0.175 0.825 31 H 0.245 0.755 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.055 0.945 41 H 0.065 0.935 42 H -0.012 1.012 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.113 9.772 -12.529 19.979 hybrid contribution 0.340 0.237 1.338 1.401 sum -11.772 10.008 -11.191 19.079 Atomic orbital electron populations 1.22455 0.74100 1.06473 1.04794 1.43916 1.08403 1.04978 1.54468 1.22320 0.89766 0.92639 1.08485 1.22289 0.98047 0.91788 1.08902 1.20422 0.92210 0.94761 1.20153 1.17997 0.83666 0.86928 0.74419 1.90706 1.87280 1.17057 1.53825 1.45780 1.04819 1.10420 1.74523 1.21313 0.85124 0.93120 0.97373 0.92648 1.21238 0.94974 0.98460 0.99692 1.20272 0.97446 0.97929 0.98124 1.21318 0.98310 0.99912 0.97583 1.20960 0.94960 0.91539 0.90677 1.43751 1.11394 1.53678 1.23500 1.19533 0.91171 1.38898 0.89909 0.91022 1.25871 0.97170 1.02285 0.99334 1.70317 1.12489 1.49196 1.26477 0.85337 0.77523 0.79261 0.78313 1.19867 1.22497 1.20021 1.20896 0.83812 0.96045 0.92130 1.21845 0.89842 0.92778 1.02954 0.89720 0.86919 0.88623 0.77622 0.82465 0.75506 0.89754 0.92132 0.90140 0.93095 0.92988 0.90364 0.94296 0.95433 0.94510 0.93520 1.01159 0.80873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 11.04 127.77 1.41 1.93 16 2 N -0.44 -8.33 3.09 -547.92 -1.69 -10.03 16 3 C -0.01 -0.09 11.34 83.12 0.94 0.85 16 4 C -0.19 -4.57 10.56 23.62 0.25 -4.32 16 5 C -0.27 -8.67 6.29 -19.04 -0.12 -8.79 16 6 C 0.58 24.01 7.77 86.62 0.67 24.68 16 7 O -0.61 -30.40 16.57 -4.09 -0.07 -30.47 16 8 N -0.71 -26.87 4.97 -447.72 -2.22 -29.09 16 9 C 0.14 5.81 2.27 44.62 0.10 5.91 16 10 H 0.06 2.55 6.73 -2.39 -0.02 2.53 16 11 C -0.11 -3.66 5.07 29.81 0.15 -3.50 16 12 C -0.10 -3.12 5.17 28.67 0.15 -2.98 16 13 C -0.13 -4.54 5.74 29.39 0.17 -4.37 16 14 C 0.15 6.44 5.65 87.38 0.49 6.94 16 15 N -0.60 -31.85 2.27 -698.36 -1.58 -33.43 16 16 C -0.26 -15.00 9.44 84.04 0.79 -14.21 16 17 H 0.07 3.89 7.88 -2.91 -0.02 3.87 16 18 C -0.05 -3.00 4.87 84.86 0.41 -2.59 16 19 N -0.94 -59.31 11.01 21.65 0.24 -59.08 16 20 Si 0.97 46.22 29.58 68.60 2.03 48.25 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 23 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 24 C 0.20 10.67 4.25 86.49 0.37 11.04 16 25 C 0.06 1.72 11.12 83.91 0.93 2.65 16 26 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.11 0.36 8.13 -2.39 -0.02 0.34 16 28 H 0.10 0.63 8.13 -2.39 -0.02 0.61 16 29 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.16 3.23 7.70 -2.91 -0.02 3.20 16 31 H 0.41 12.80 7.67 -92.70 -0.71 12.09 16 32 H 0.08 2.36 7.94 -2.39 -0.02 2.34 16 33 H 0.06 2.37 7.48 -2.39 -0.02 2.36 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 1.61 7.35 -2.39 -0.02 1.59 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.04 1.74 7.99 -2.39 -0.02 1.72 16 39 H 0.03 1.23 8.06 -2.38 -0.02 1.21 16 40 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.05 2.76 6.31 -2.39 -0.02 2.74 16 42 H -0.03 -1.93 8.03 -2.39 -0.02 -1.95 16 43 H 0.17 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -81.59 345.77 3.71 -77.87 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.29 Total: 22.73 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 6.73 Total: 13.24 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -5.26 Total: -131.63 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.07 Total: -30.47 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -81.59 3.71 -77.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034162608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.484 kcal (2) G-P(sol) polarization free energy of solvation -81.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds