Wall clock time and date at job start Tue Mar 31 2020 07:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36446 * 124.84983 * 2 1 4 4 C 1.34485 * 108.85807 * 180.02562 * 3 2 1 5 5 C 1.46691 * 106.32946 * 359.97438 * 4 3 2 6 6 C 1.47260 * 126.93632 * 180.02562 * 5 4 3 7 7 O 1.21638 * 119.99368 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00391 * 0.02562 * 6 5 4 9 9 C 1.46510 * 119.99925 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.46680 * 35.00162 * 9 8 6 11 11 C 1.52996 * 109.46858 * 155.00046 * 9 8 6 12 12 C 1.53002 * 109.46972 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46817 * 299.99733 * 12 11 9 14 14 H 1.09001 * 109.47502 * 300.00518 * 13 12 11 15 15 N 1.46500 * 109.47007 * 180.02562 * 13 12 11 16 16 C 1.36936 * 120.00035 * 85.00367 * 15 13 12 17 17 H 1.07997 * 120.00191 * 359.97438 * 16 15 13 18 18 C 1.38812 * 119.99597 * 180.02562 * 16 15 13 19 19 N 1.31625 * 119.99618 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00647 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47450 * 89.99561 * 20 18 16 22 22 H 1.48497 * 109.47342 * 210.00324 * 20 18 16 23 23 H 1.48504 * 109.46820 * 329.99792 * 20 18 16 24 24 C 1.53006 * 109.47127 * 60.00361 * 13 12 11 25 25 C 1.52997 * 109.47071 * 274.99865 * 9 8 6 26 26 C 1.34654 * 124.85376 * 180.34003 * 2 1 3 27 27 H 1.09003 * 109.47174 * 89.97417 * 1 2 3 28 28 H 1.08999 * 109.46782 * 209.97211 * 1 2 3 29 29 H 1.08996 * 109.47197 * 329.97448 * 1 2 3 30 30 H 1.08006 * 125.57140 * 0.03868 * 3 2 1 31 31 H 1.07998 * 126.83427 * 179.97438 * 4 3 2 32 32 H 0.96994 * 120.00306 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.47452 * 59.99781 * 11 9 8 34 34 H 1.09000 * 109.47054 * 299.99941 * 11 9 8 35 35 H 1.09002 * 109.47070 * 179.97438 * 12 11 9 36 36 H 1.08996 * 109.47407 * 59.99513 * 12 11 9 37 37 H 0.97002 * 120.00030 * 265.00025 * 15 13 12 38 38 H 0.97001 * 120.00319 * 179.97438 * 19 18 16 39 39 H 1.08993 * 109.46955 * 60.00011 * 24 13 12 40 40 H 1.09000 * 109.47050 * 179.97438 * 24 13 12 41 41 H 1.09002 * 109.47153 * 60.00215 * 25 9 8 42 42 H 1.08993 * 109.47194 * 300.00503 * 25 9 8 43 43 H 1.08007 * 125.80010 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5376 0.7492 -0.0006 5 6 3.5462 -0.7176 -0.0003 6 6 4.7285 -1.5956 -0.0002 7 8 4.5885 -2.8039 -0.0005 8 7 5.9654 -1.0604 0.0002 9 6 7.1415 -1.9340 0.0008 10 1 6.9314 -2.8265 -0.5885 11 6 8.3306 -1.1887 -0.6085 12 6 9.5588 -2.1012 -0.6084 13 6 9.8929 -2.5064 0.8286 14 1 10.1031 -1.6140 1.4183 15 7 11.0692 -3.3796 0.8288 16 6 12.3258 -2.8355 0.8294 17 1 12.4498 -1.7627 0.8293 18 6 13.4403 -3.6630 0.8290 19 7 14.6482 -3.1400 0.8291 20 14 13.2261 -5.5186 0.8285 21 1 13.1690 -6.0100 -0.5716 22 1 14.3738 -6.1497 1.5283 23 1 11.9648 -5.8714 1.5287 24 6 8.7037 -3.2517 1.4380 25 6 7.4754 -2.3387 1.4380 26 6 2.2346 -1.1050 -0.0066 27 1 -0.3634 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8897 0.5142 30 1 1.8828 2.1374 0.0006 31 1 4.3981 1.4018 -0.0011 32 1 6.0769 -0.0969 0.0007 33 1 8.5407 -0.2961 -0.0192 34 1 8.0928 -0.9004 -1.6324 35 1 10.4059 -1.5704 -1.0429 36 1 9.3485 -2.9935 -1.1979 37 1 10.9579 -4.3432 0.8286 38 1 15.4271 -3.7182 0.8292 39 1 8.4935 -4.1440 0.8484 40 1 8.9419 -3.5408 2.4616 41 1 6.6282 -2.8697 1.8721 42 1 7.6853 -1.4461 2.0273 43 1 1.8768 -2.1240 -0.0122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034622033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:45 Heat of formation + Delta-G solvation = 13.716885 kcal Electronic energy + Delta-G solvation = -22672.643194 eV Core-core repulsion = 19332.374793 eV Total energy + Delta-G solvation = -3340.268401 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.48335 -39.54348 -37.77271 -34.82144 -33.33491 -32.69008 -30.89059 -30.37939 -29.46172 -27.99223 -26.64101 -23.64515 -22.43885 -22.28568 -20.89254 -20.24931 -20.01400 -19.32557 -18.10404 -17.43376 -16.04511 -15.89963 -15.78042 -14.97381 -14.67925 -14.50152 -14.20610 -13.76303 -13.64583 -13.40659 -13.28014 -12.92081 -12.80304 -12.71856 -12.56966 -12.30986 -12.14912 -11.81624 -11.70293 -10.92742 -10.80576 -10.73854 -10.59307 -10.24707 -10.12245 -9.80397 -9.62793 -9.50733 -8.99691 -8.85866 -8.79313 -8.56594 -7.19660 -5.71491 -3.06114 1.61611 2.14725 2.46732 3.42107 3.43374 3.47188 3.50616 3.57528 4.28037 4.57934 4.63129 4.65097 4.68142 4.89067 4.93004 5.08060 5.15228 5.18620 5.23996 5.56159 5.59905 5.61259 5.68507 5.69614 5.77252 5.88348 5.92261 6.05360 6.28262 6.31365 6.36101 6.41341 6.45154 6.56873 6.67167 6.69119 6.77785 6.88717 6.96432 7.10476 7.69833 8.05883 8.41863 8.48195 9.27408 10.00461 10.21027 11.46979 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.047894 B = 0.002628 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.487411 B =10653.247252 C =10985.129005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.449 5.449 3 C -0.019 4.019 4 C -0.169 4.169 5 C -0.232 4.232 6 C 0.589 3.411 7 O -0.555 6.555 8 N -0.720 5.720 9 C 0.146 3.854 10 H 0.086 0.914 11 C -0.122 4.122 12 C -0.131 4.131 13 C 0.182 3.818 14 H 0.055 0.945 15 N -0.750 5.750 16 C -0.239 4.239 17 H 0.090 0.910 18 C 0.002 3.998 19 N -0.936 5.936 20 Si 0.884 3.116 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.276 1.276 24 C -0.124 4.124 25 C -0.120 4.120 26 C 0.072 3.928 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.166 0.834 31 H 0.146 0.854 32 H 0.397 0.603 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.361 0.639 38 H 0.258 0.742 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.230 9.754 -2.016 31.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.125 5.125 3 C -0.146 4.146 4 C -0.193 4.193 5 C -0.242 4.242 6 C 0.378 3.622 7 O -0.435 6.435 8 N -0.370 5.370 9 C 0.042 3.958 10 H 0.104 0.896 11 C -0.160 4.160 12 C -0.172 4.172 13 C 0.072 3.928 14 H 0.073 0.927 15 N -0.392 5.392 16 C -0.369 4.369 17 H 0.108 0.892 18 C -0.194 4.194 19 N -0.584 5.584 20 Si 0.715 3.285 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.203 1.203 24 C -0.163 4.163 25 C -0.160 4.160 26 C -0.063 4.063 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.183 0.817 31 H 0.164 0.836 32 H 0.231 0.769 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.193 0.807 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -30.465 9.075 -2.000 31.851 hybrid contribution 0.008 -0.773 -0.051 0.775 sum -30.457 8.302 -2.050 31.635 Atomic orbital electron populations 1.22121 0.76909 1.04688 1.03561 1.43626 1.06774 1.05961 1.56148 1.21745 0.90613 0.91265 1.10949 1.22066 0.96220 0.93265 1.07739 1.20428 0.92680 0.93368 1.17703 1.17377 0.82447 0.87007 0.75384 1.90772 1.86628 1.14734 1.51333 1.45920 1.05401 1.10258 1.75400 1.21069 0.83754 0.93819 0.97111 0.89585 1.21801 0.94755 0.99188 1.00289 1.22172 0.95724 0.98711 1.00608 1.20219 0.85876 0.93583 0.93088 0.92738 1.42814 1.02189 1.03942 1.90255 1.19086 0.81468 0.93834 1.42537 0.89231 1.24677 0.95118 0.97339 1.02253 1.69706 0.96867 1.33949 1.57891 0.86545 0.76899 0.87343 0.77763 1.21152 1.21862 1.20258 1.21807 0.94484 0.98529 1.01494 1.21836 0.98044 0.99923 0.96149 1.21797 0.89880 0.91744 1.02919 0.90649 0.89572 0.89582 0.81663 0.83634 0.76857 0.91683 0.92092 0.91126 0.92530 0.80688 0.93164 0.92226 0.91647 0.91950 0.91898 0.80878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.20 11.03 59.85 0.66 0.86 16 2 N -0.45 -3.17 3.09 -124.52 -0.38 -3.56 16 3 C -0.02 -0.14 11.34 -16.83 -0.19 -0.33 16 4 C -0.17 -1.47 10.56 -37.50 -0.40 -1.87 16 5 C -0.23 -2.63 6.29 -103.35 -0.65 -3.28 16 6 C 0.59 8.24 7.77 -12.60 -0.10 8.15 16 7 O -0.56 -9.76 16.58 5.24 0.09 -9.68 16 8 N -0.72 -8.78 5.07 -54.93 -0.28 -9.06 16 9 C 0.15 2.04 2.45 -67.93 -0.17 1.87 16 10 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 11 C -0.12 -1.64 5.39 -26.73 -0.14 -1.79 16 12 C -0.13 -2.27 5.50 -26.73 -0.15 -2.42 16 13 C 0.18 3.51 2.77 -67.93 -0.19 3.33 16 14 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 15 N -0.75 -18.03 4.93 -53.42 -0.26 -18.29 16 16 C -0.24 -6.80 10.41 -15.06 -0.16 -6.95 16 17 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 18 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 19 N -0.94 -29.71 13.97 55.49 0.78 -28.93 16 20 Si 0.88 22.60 27.74 -169.99 -4.71 17.89 16 21 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 23 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 24 C -0.12 -2.08 5.39 -26.70 -0.14 -2.22 16 25 C -0.12 -1.75 5.50 -26.71 -0.15 -1.90 16 26 C 0.07 0.69 11.12 -16.85 -0.19 0.50 16 27 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.09 0.17 8.13 -51.93 -0.42 -0.25 16 29 H 0.09 0.11 8.13 -51.93 -0.42 -0.31 16 30 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 31 H 0.15 0.98 7.70 -52.49 -0.40 0.58 16 32 H 0.40 3.81 7.73 -40.82 -0.32 3.50 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.36 8.61 5.66 -40.82 -0.23 8.38 16 38 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.17 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -35.59 351.89 -8.38 -43.97 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.85 Total: 8.47 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.05 Total: -6.11 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.15 Total: -59.84 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.59 -8.38 -43.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034622033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.687 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds