Wall clock time and date at job start Tue Mar 31 2020 07:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36446 * 124.84983 * 2 1 4 4 C 1.34485 * 108.85807 * 180.02562 * 3 2 1 5 5 C 1.46691 * 106.32946 * 359.97438 * 4 3 2 6 6 C 1.47260 * 126.93632 * 180.02562 * 5 4 3 7 7 O 1.21638 * 119.99368 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00391 * 0.02562 * 6 5 4 9 9 C 1.46510 * 119.99925 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.46680 * 35.00162 * 9 8 6 11 11 C 1.52996 * 109.46858 * 155.00046 * 9 8 6 12 12 C 1.53002 * 109.46972 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46817 * 299.99733 * 12 11 9 14 14 H 1.09001 * 109.47502 * 300.00518 * 13 12 11 15 15 N 1.46500 * 109.47007 * 180.02562 * 13 12 11 16 16 C 1.36936 * 120.00035 * 85.00367 * 15 13 12 17 17 H 1.07997 * 120.00191 * 359.97438 * 16 15 13 18 18 C 1.38812 * 119.99597 * 180.02562 * 16 15 13 19 19 N 1.31625 * 119.99618 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00647 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47450 * 89.99561 * 20 18 16 22 22 H 1.48497 * 109.47342 * 210.00324 * 20 18 16 23 23 H 1.48504 * 109.46820 * 329.99792 * 20 18 16 24 24 C 1.53006 * 109.47127 * 60.00361 * 13 12 11 25 25 C 1.52997 * 109.47071 * 274.99865 * 9 8 6 26 26 C 1.34654 * 124.85376 * 180.34003 * 2 1 3 27 27 H 1.09003 * 109.47174 * 89.97417 * 1 2 3 28 28 H 1.08999 * 109.46782 * 209.97211 * 1 2 3 29 29 H 1.08996 * 109.47197 * 329.97448 * 1 2 3 30 30 H 1.08006 * 125.57140 * 0.03868 * 3 2 1 31 31 H 1.07998 * 126.83427 * 179.97438 * 4 3 2 32 32 H 0.96994 * 120.00306 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.47452 * 59.99781 * 11 9 8 34 34 H 1.09000 * 109.47054 * 299.99941 * 11 9 8 35 35 H 1.09002 * 109.47070 * 179.97438 * 12 11 9 36 36 H 1.08996 * 109.47407 * 59.99513 * 12 11 9 37 37 H 0.97002 * 120.00030 * 265.00025 * 15 13 12 38 38 H 0.97001 * 120.00319 * 179.97438 * 19 18 16 39 39 H 1.08993 * 109.46955 * 60.00011 * 24 13 12 40 40 H 1.09000 * 109.47050 * 179.97438 * 24 13 12 41 41 H 1.09002 * 109.47153 * 60.00215 * 25 9 8 42 42 H 1.08993 * 109.47194 * 300.00503 * 25 9 8 43 43 H 1.08007 * 125.80010 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5376 0.7492 -0.0006 5 6 3.5462 -0.7176 -0.0003 6 6 4.7285 -1.5956 -0.0002 7 8 4.5885 -2.8039 -0.0005 8 7 5.9654 -1.0604 0.0002 9 6 7.1415 -1.9340 0.0008 10 1 6.9314 -2.8265 -0.5885 11 6 8.3306 -1.1887 -0.6085 12 6 9.5588 -2.1012 -0.6084 13 6 9.8929 -2.5064 0.8286 14 1 10.1031 -1.6140 1.4183 15 7 11.0692 -3.3796 0.8288 16 6 12.3258 -2.8355 0.8294 17 1 12.4498 -1.7627 0.8293 18 6 13.4403 -3.6630 0.8290 19 7 14.6482 -3.1400 0.8291 20 14 13.2261 -5.5186 0.8285 21 1 13.1690 -6.0100 -0.5716 22 1 14.3738 -6.1497 1.5283 23 1 11.9648 -5.8714 1.5287 24 6 8.7037 -3.2517 1.4380 25 6 7.4754 -2.3387 1.4380 26 6 2.2346 -1.1050 -0.0066 27 1 -0.3634 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8897 0.5142 30 1 1.8828 2.1374 0.0006 31 1 4.3981 1.4018 -0.0011 32 1 6.0769 -0.0969 0.0007 33 1 8.5407 -0.2961 -0.0192 34 1 8.0928 -0.9004 -1.6324 35 1 10.4059 -1.5704 -1.0429 36 1 9.3485 -2.9935 -1.1979 37 1 10.9579 -4.3432 0.8286 38 1 15.4271 -3.7182 0.8292 39 1 8.4935 -4.1440 0.8484 40 1 8.9419 -3.5408 2.4616 41 1 6.6282 -2.8697 1.8721 42 1 7.6853 -1.4461 2.0273 43 1 1.8768 -2.1240 -0.0122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034622033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:45 Heat of formation + Delta-G solvation = -10.295250 kcal Electronic energy + Delta-G solvation = -22673.684438 eV Core-core repulsion = 19332.374793 eV Total energy + Delta-G solvation = -3341.309645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10355 -40.66222 -39.10299 -36.39902 -34.63671 -33.64869 -32.71089 -31.68780 -30.15708 -29.31142 -27.31754 -25.30289 -23.65791 -23.56458 -22.14624 -21.27907 -20.95661 -20.39749 -19.53594 -18.77134 -17.18351 -16.83931 -16.66971 -16.32902 -16.11611 -15.62209 -15.20260 -14.98289 -14.93226 -14.57043 -14.42669 -14.32380 -13.88256 -13.73408 -13.41498 -13.26542 -13.09329 -13.03326 -12.93798 -12.86060 -12.43032 -12.12134 -12.03373 -11.88774 -11.77876 -11.67321 -11.14849 -10.88177 -10.85679 -10.01697 -9.47555 -9.27734 -9.25411 -7.99908 -5.32211 0.80930 1.39323 1.41337 1.48744 1.56745 1.94770 2.47691 2.50293 2.64005 3.31291 3.59423 3.75137 3.90377 4.01083 4.04707 4.11538 4.22458 4.34970 4.35841 4.39393 4.48390 4.55249 4.59867 4.62730 4.67423 4.76356 4.87165 4.94851 5.04864 5.10610 5.14220 5.20585 5.24308 5.29270 5.50172 5.60207 5.64238 5.80991 5.81349 6.10658 6.24918 6.38309 6.75473 7.10639 7.41687 7.88245 8.06863 9.21573 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.047894 B = 0.002628 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.487411 B =10653.247252 C =10985.129005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.444 5.444 3 C -0.011 4.011 4 C -0.183 4.183 5 C -0.266 4.266 6 C 0.585 3.415 7 O -0.601 6.601 8 N -0.708 5.708 9 C 0.153 3.847 10 H 0.066 0.934 11 C -0.108 4.108 12 C -0.124 4.124 13 C 0.176 3.824 14 H 0.047 0.953 15 N -0.755 5.755 16 C -0.223 4.223 17 H 0.060 0.940 18 C -0.067 4.067 19 N -0.984 5.984 20 Si 0.952 3.048 21 H -0.281 1.281 22 H -0.297 1.297 23 H -0.254 1.254 24 C -0.115 4.115 25 C -0.111 4.111 26 C 0.063 3.937 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.201 0.799 31 H 0.162 0.838 32 H 0.412 0.588 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.363 0.637 38 H 0.256 0.744 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.305 10.711 -2.060 35.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.119 5.119 3 C -0.138 4.138 4 C -0.207 4.207 5 C -0.277 4.277 6 C 0.376 3.624 7 O -0.484 6.484 8 N -0.358 5.358 9 C 0.048 3.952 10 H 0.084 0.916 11 C -0.147 4.147 12 C -0.165 4.165 13 C 0.068 3.932 14 H 0.066 0.934 15 N -0.397 5.397 16 C -0.354 4.354 17 H 0.078 0.922 18 C -0.258 4.258 19 N -0.635 5.635 20 Si 0.780 3.220 21 H -0.207 1.207 22 H -0.223 1.223 23 H -0.179 1.179 24 C -0.154 4.154 25 C -0.150 4.150 26 C -0.074 4.074 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.218 0.782 31 H 0.179 0.821 32 H 0.249 0.751 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.196 0.804 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -33.619 10.088 -2.046 35.159 hybrid contribution 0.843 -0.942 -0.039 1.265 sum -32.775 9.146 -2.085 34.091 Atomic orbital electron populations 1.22442 0.74367 1.06279 1.04848 1.43934 1.08335 1.05204 1.54387 1.22323 0.90126 0.92553 1.08790 1.22317 0.97824 0.92011 1.08512 1.20406 0.92264 0.94569 1.20421 1.17832 0.83425 0.86771 0.74397 1.90736 1.87274 1.16745 1.53677 1.45728 1.04477 1.10810 1.74807 1.20840 0.84470 0.93573 0.96278 0.91582 1.21661 0.92607 0.98625 1.01760 1.21989 0.96773 0.99154 0.98585 1.20456 0.85248 0.92969 0.94513 0.93445 1.42872 1.01997 1.04596 1.90265 1.19047 0.83344 0.92622 1.40354 0.92195 1.25470 0.94792 1.02403 1.03174 1.69878 0.97783 1.35665 1.60210 0.85444 0.77441 0.81177 0.77955 1.20693 1.22336 1.17911 1.21689 0.94116 0.98623 1.00984 1.21738 0.96576 0.99840 0.96829 1.21909 0.89989 0.92711 1.02769 0.89472 0.88750 0.87369 0.78231 0.82097 0.75107 0.90045 0.90342 0.93186 0.92900 0.80420 0.93487 0.92321 0.91868 0.92494 0.90610 0.80782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.17 11.03 127.77 1.41 1.58 16 2 N -0.44 -5.13 3.09 -547.88 -1.69 -6.82 16 3 C -0.01 -0.12 11.34 83.12 0.94 0.82 16 4 C -0.18 -2.78 10.56 23.62 0.25 -2.53 16 5 C -0.27 -5.80 6.29 -19.04 -0.12 -5.92 16 6 C 0.59 16.15 7.77 86.62 0.67 16.82 16 7 O -0.60 -21.48 16.58 -4.15 -0.07 -21.55 16 8 N -0.71 -16.34 5.07 -445.94 -2.26 -18.60 16 9 C 0.15 4.08 2.45 44.99 0.11 4.19 16 10 H 0.07 2.07 7.58 -2.39 -0.02 2.05 16 11 C -0.11 -2.73 5.39 30.59 0.16 -2.57 16 12 C -0.12 -4.23 5.50 30.59 0.17 -4.06 16 13 C 0.18 6.71 2.77 44.99 0.12 6.84 16 14 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 15 N -0.75 -36.08 4.93 -322.94 -1.59 -37.67 16 16 C -0.22 -12.84 10.41 84.03 0.87 -11.96 16 17 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 18 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 19 N -0.98 -64.04 13.97 21.65 0.30 -63.74 16 20 Si 0.95 46.94 27.74 68.60 1.90 48.84 16 21 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 22 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 23 H -0.25 -11.47 6.52 99.48 0.65 -10.82 16 24 C -0.12 -3.75 5.39 30.61 0.17 -3.58 16 25 C -0.11 -3.09 5.50 30.61 0.17 -2.92 16 26 C 0.06 1.15 11.12 83.91 0.93 2.09 16 27 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.09 0.13 8.13 -2.39 -0.02 0.11 16 29 H 0.11 -0.14 8.13 -2.39 -0.02 -0.16 16 30 H 0.20 0.68 8.06 -2.91 -0.02 0.65 16 31 H 0.16 1.75 7.70 -2.91 -0.02 1.72 16 32 H 0.41 7.03 7.73 -92.71 -0.72 6.31 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.36 16.91 5.66 -92.71 -0.52 16.39 16 38 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -79.07 351.89 2.63 -76.44 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.29 Total: 27.88 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 6.33 Total: -4.79 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -5.24 Total: -126.82 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.07 Total: -21.55 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.90 Total: 48.84 kcal Total: -79.07 2.63 -76.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034622033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.144 kcal (2) G-P(sol) polarization free energy of solvation -79.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds