Wall clock time and date at job start Tue Mar 31 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47421 * 2 1 4 4 C 1.35532 * 125.68153 * 263.09176 * 3 2 1 5 5 C 1.35450 * 108.87172 * 180.26505 * 4 3 2 6 6 C 1.39836 * 107.86809 * 359.76675 * 5 4 3 7 7 C 1.37659 * 125.67652 * 82.96423 * 3 2 1 8 8 C 1.46678 * 126.23042 * 359.97438 * 7 3 2 9 9 O 1.21697 * 120.00211 * 5.14029 * 8 7 3 10 10 N 1.34784 * 119.99735 * 185.13297 * 8 7 3 11 11 C 1.46496 * 119.99929 * 175.00825 * 10 8 7 12 12 C 1.53004 * 110.91691 * 62.44865 * 11 10 8 13 13 C 1.55441 * 111.01404 * 186.50223 * 11 10 8 14 14 C 1.54324 * 102.96668 * 82.52375 * 13 11 10 15 15 N 1.47023 * 107.27187 * 22.19812 * 14 13 11 16 16 C 1.36940 * 125.65003 * 181.03833 * 15 14 13 17 17 H 1.07997 * 120.00196 * 174.27991 * 16 15 14 18 18 C 1.38815 * 119.99827 * 354.28212 * 16 15 14 19 19 N 1.31618 * 120.00017 * 6.30903 * 18 16 15 20 20 Si 1.86799 * 119.99787 * 186.30649 * 18 16 15 21 21 H 1.48495 * 109.47158 * 94.99234 * 20 18 16 22 22 H 1.48500 * 109.46798 * 214.98877 * 20 18 16 23 23 H 1.48491 * 109.47322 * 334.98716 * 20 18 16 24 24 C 1.47425 * 108.70277 * 1.05249 * 15 14 13 25 25 H 1.09007 * 109.46657 * 59.99653 * 1 2 3 26 26 H 1.08992 * 109.47850 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47226 * 300.00269 * 1 2 3 28 28 H 1.08999 * 109.47226 * 239.99731 * 2 1 3 29 29 H 1.08998 * 109.46872 * 120.00294 * 2 1 3 30 30 H 1.08001 * 125.56039 * 0.06948 * 4 3 2 31 31 H 1.07997 * 126.06664 * 179.79207 * 5 4 3 32 32 H 1.08002 * 126.45913 * 179.97438 * 6 5 4 33 33 H 0.96992 * 119.99905 * 355.01057 * 10 8 7 34 34 H 1.09004 * 109.47352 * 297.55318 * 12 11 10 35 35 H 1.09000 * 109.46998 * 57.54998 * 12 11 10 36 36 H 1.08997 * 109.47330 * 177.55166 * 12 11 10 37 37 H 1.09004 * 110.70954 * 324.15520 * 13 11 10 38 38 H 1.08996 * 110.86015 * 200.96522 * 13 11 10 39 39 H 1.08991 * 109.88435 * 262.77342 * 14 13 11 40 40 H 1.09003 * 110.00778 * 141.68514 * 14 13 11 41 41 H 0.96993 * 120.00058 * 180.02562 * 19 18 16 42 42 H 1.09002 * 110.36483 * 94.71251 * 24 15 14 43 43 H 1.09001 * 110.36647 * 216.92786 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4068 2.0823 -1.0929 5 6 2.8002 3.3185 -0.7033 6 6 2.6488 3.3994 0.6845 7 6 2.1569 2.1837 1.1098 8 6 1.8435 1.8114 2.4935 9 8 1.5066 0.6717 2.7556 10 7 1.9289 2.7314 3.4748 11 6 1.5116 2.3903 4.8370 12 6 2.3758 1.2637 5.4070 13 6 1.5428 3.6413 5.7592 14 6 0.1949 4.3289 5.4556 15 7 -0.7045 3.3034 4.9069 16 6 -1.9923 3.5115 4.4904 17 1 -2.5421 2.7122 4.0158 18 6 -2.5909 4.7498 4.6780 19 7 -1.8843 5.7589 5.1415 20 14 -4.3993 4.9839 4.2727 21 1 -5.2101 4.8012 5.5032 22 1 -4.6134 6.3525 3.7376 23 1 -4.8119 3.9844 3.2550 24 6 0.0096 2.0139 4.8798 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.4060 1.7142 -2.1082 31 1 3.1655 4.1026 -1.3498 32 1 2.8751 4.2532 1.3060 33 1 2.2665 3.6194 3.2789 34 1 2.2453 0.3650 4.8040 35 1 3.4233 1.5645 5.3887 36 1 2.0744 1.0588 6.4342 37 1 2.3760 4.2931 5.4966 38 1 1.5991 3.3491 6.8078 39 1 0.3407 5.1238 4.7244 40 1 -0.2281 4.7412 6.3717 41 1 -2.3027 6.6240 5.2730 42 1 -0.2119 1.4387 5.7788 43 1 -0.2649 1.4469 3.9902 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046835532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:02 Heat of formation + Delta-G solvation = 39.580743 kcal Electronic energy + Delta-G solvation = -24433.787928 eV Core-core repulsion = 21094.641068 eV Total energy + Delta-G solvation = -3339.146860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.26628 -39.35511 -37.02678 -34.35763 -33.66116 -31.92616 -30.23814 -29.21136 -28.85389 -28.42588 -25.63743 -23.81333 -23.49667 -22.53356 -20.60963 -20.27734 -19.32377 -18.79673 -17.71446 -16.75227 -15.62838 -15.43078 -15.12961 -14.63234 -14.46268 -14.22101 -13.80646 -13.69298 -13.48581 -13.22286 -12.71546 -12.39195 -12.26029 -12.18364 -12.01780 -11.87455 -11.86109 -11.72960 -11.61970 -11.14051 -10.89498 -10.84520 -10.34015 -10.33178 -10.04602 -9.97872 -9.62339 -9.29223 -8.63553 -8.60774 -8.51607 -8.03979 -6.75273 -5.68292 -2.98970 1.71342 2.77404 2.89599 3.42783 3.48222 3.49870 3.63947 3.79573 4.54124 4.72503 4.94329 5.02994 5.09491 5.22790 5.30465 5.43426 5.46781 5.48767 5.50511 5.64369 5.71530 5.77075 5.85500 6.04149 6.15392 6.16623 6.20079 6.23177 6.31688 6.39426 6.43700 6.57449 6.71201 6.81162 6.90859 7.12818 7.18130 7.34063 7.56649 7.62849 7.84015 7.97476 8.30212 8.62583 9.27065 9.87383 10.53999 11.44248 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.005582 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.211156 B = 5014.795631 C = 5750.662702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.099 3.901 3 N -0.408 5.408 4 C 0.006 3.994 5 C -0.208 4.208 6 C -0.145 4.145 7 C -0.040 4.040 8 C 0.592 3.408 9 O -0.551 6.551 10 N -0.689 5.689 11 C 0.159 3.841 12 C -0.149 4.149 13 C -0.146 4.146 14 C 0.177 3.823 15 N -0.602 5.602 16 C -0.221 4.221 17 H 0.075 0.925 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.133 3.867 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.164 0.836 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.399 0.601 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.047 0.953 41 H 0.251 0.749 42 H 0.026 0.974 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.867 -7.591 -8.583 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 N -0.081 5.081 4 C -0.129 4.129 5 C -0.233 4.233 6 C -0.171 4.171 7 C -0.154 4.154 8 C 0.380 3.620 9 O -0.431 6.431 10 N -0.338 5.338 11 C 0.072 3.928 12 C -0.207 4.207 13 C -0.185 4.185 14 C 0.052 3.948 15 N -0.328 5.328 16 C -0.350 4.350 17 H 0.093 0.907 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C 0.006 3.994 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.181 0.819 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.234 0.766 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.301 -8.597 -8.355 16.475 hybrid contribution -0.890 0.821 -0.437 1.288 sum 10.411 -7.776 -8.792 15.689 Atomic orbital electron populations 1.22073 0.93945 1.02862 1.03288 1.22000 0.96119 0.79657 1.04440 1.44048 1.46851 1.11585 1.05618 1.21918 1.05875 0.93521 0.91624 1.20760 1.09975 0.97278 0.95255 1.21345 1.04143 0.95974 0.95617 1.20208 1.13894 0.92856 0.88404 1.16864 0.77066 0.84989 0.83104 1.90710 1.49068 1.19646 1.83678 1.45458 1.65004 1.15105 1.08279 1.21543 0.95572 0.95301 0.80334 1.22007 0.98537 0.99266 1.00927 1.23272 1.00815 0.95865 0.98524 1.21163 0.84783 0.90427 0.98440 1.44419 1.11188 1.02868 1.74328 1.19037 0.87027 0.97017 1.31881 0.90725 1.24767 0.98091 0.95949 1.01602 1.69954 1.34143 1.01044 1.51875 0.86145 0.85199 0.77036 0.77734 1.21668 1.21815 1.20761 1.21853 0.88604 0.89832 0.99064 0.92560 0.90938 0.90959 0.89828 0.87660 0.81909 0.84346 0.84082 0.76605 0.90825 0.93167 0.91948 0.91742 0.90802 0.93991 0.93505 0.93873 0.95682 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 10.22 37.16 0.38 -1.69 16 2 C 0.10 1.19 6.14 -4.04 -0.02 1.16 16 3 N -0.41 -5.68 2.76 -112.88 -0.31 -6.00 16 4 C 0.01 0.07 11.36 -16.91 -0.19 -0.13 16 5 C -0.21 -2.62 10.81 -39.98 -0.43 -3.06 16 6 C -0.14 -2.08 10.35 -39.12 -0.41 -2.48 16 7 C -0.04 -0.64 6.89 -81.98 -0.56 -1.20 16 8 C 0.59 10.50 7.12 -12.85 -0.09 10.41 16 9 O -0.55 -10.56 11.36 5.19 0.06 -10.50 16 10 N -0.69 -11.81 5.16 -46.77 -0.24 -12.05 16 11 C 0.16 2.86 0.83 -129.52 -0.11 2.75 16 12 C -0.15 -2.30 8.59 37.16 0.32 -1.98 16 13 C -0.15 -2.62 6.00 -24.74 -0.15 -2.77 16 14 C 0.18 4.21 5.38 -3.06 -0.02 4.19 16 15 N -0.60 -15.57 3.40 -170.07 -0.58 -16.15 16 16 C -0.22 -6.33 10.27 -15.06 -0.15 -6.49 16 17 H 0.07 2.12 7.84 -52.49 -0.41 1.71 16 18 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 19 N -0.92 -27.18 10.35 55.49 0.57 -26.61 16 20 Si 0.91 22.63 29.56 -169.99 -5.02 17.61 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.13 2.95 6.11 -2.53 -0.02 2.94 16 25 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.19 7.83 -51.93 -0.41 0.78 16 28 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 29 H 0.11 1.41 6.63 -51.93 -0.34 1.07 16 30 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.14 1.79 7.45 -52.49 -0.39 1.40 16 33 H 0.40 6.22 7.40 -40.82 -0.30 5.91 16 34 H 0.07 1.23 6.37 -51.93 -0.33 0.90 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 37 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 38 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 39 H 0.04 1.09 7.54 -51.93 -0.39 0.70 16 40 H 0.05 1.24 7.36 -51.93 -0.38 0.86 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.03 0.56 8.04 -51.93 -0.42 0.14 16 43 H 0.05 1.22 6.48 -51.93 -0.34 0.88 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -32.63 343.55 -8.53 -41.17 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.64 Total: 6.01 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.55 Total: 1.33 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.56 Total: -60.80 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.06 Total: -10.50 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.63 -8.53 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046835532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.748 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds