Wall clock time and date at job start Tue Mar 31 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47421 * 2 1 4 4 C 1.35532 * 125.68153 * 263.09176 * 3 2 1 5 5 C 1.35450 * 108.87172 * 180.26505 * 4 3 2 6 6 C 1.39836 * 107.86809 * 359.76675 * 5 4 3 7 7 C 1.37659 * 125.67652 * 82.96423 * 3 2 1 8 8 C 1.46678 * 126.23042 * 359.97438 * 7 3 2 9 9 O 1.21697 * 120.00211 * 5.14029 * 8 7 3 10 10 N 1.34784 * 119.99735 * 185.13297 * 8 7 3 11 11 C 1.46496 * 119.99929 * 175.00825 * 10 8 7 12 12 C 1.53004 * 110.91691 * 62.44865 * 11 10 8 13 13 C 1.55441 * 111.01404 * 186.50223 * 11 10 8 14 14 C 1.54324 * 102.96668 * 82.52375 * 13 11 10 15 15 N 1.47023 * 107.27187 * 22.19812 * 14 13 11 16 16 C 1.36940 * 125.65003 * 181.03833 * 15 14 13 17 17 H 1.07997 * 120.00196 * 174.27991 * 16 15 14 18 18 C 1.38815 * 119.99827 * 354.28212 * 16 15 14 19 19 N 1.31618 * 120.00017 * 6.30903 * 18 16 15 20 20 Si 1.86799 * 119.99787 * 186.30649 * 18 16 15 21 21 H 1.48495 * 109.47158 * 94.99234 * 20 18 16 22 22 H 1.48500 * 109.46798 * 214.98877 * 20 18 16 23 23 H 1.48491 * 109.47322 * 334.98716 * 20 18 16 24 24 C 1.47425 * 108.70277 * 1.05249 * 15 14 13 25 25 H 1.09007 * 109.46657 * 59.99653 * 1 2 3 26 26 H 1.08992 * 109.47850 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47226 * 300.00269 * 1 2 3 28 28 H 1.08999 * 109.47226 * 239.99731 * 2 1 3 29 29 H 1.08998 * 109.46872 * 120.00294 * 2 1 3 30 30 H 1.08001 * 125.56039 * 0.06948 * 4 3 2 31 31 H 1.07997 * 126.06664 * 179.79207 * 5 4 3 32 32 H 1.08002 * 126.45913 * 179.97438 * 6 5 4 33 33 H 0.96992 * 119.99905 * 355.01057 * 10 8 7 34 34 H 1.09004 * 109.47352 * 297.55318 * 12 11 10 35 35 H 1.09000 * 109.46998 * 57.54998 * 12 11 10 36 36 H 1.08997 * 109.47330 * 177.55166 * 12 11 10 37 37 H 1.09004 * 110.70954 * 324.15520 * 13 11 10 38 38 H 1.08996 * 110.86015 * 200.96522 * 13 11 10 39 39 H 1.08991 * 109.88435 * 262.77342 * 14 13 11 40 40 H 1.09003 * 110.00778 * 141.68514 * 14 13 11 41 41 H 0.96993 * 120.00058 * 180.02562 * 19 18 16 42 42 H 1.09002 * 110.36483 * 94.71251 * 24 15 14 43 43 H 1.09001 * 110.36647 * 216.92786 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4068 2.0823 -1.0929 5 6 2.8002 3.3185 -0.7033 6 6 2.6488 3.3994 0.6845 7 6 2.1569 2.1837 1.1098 8 6 1.8435 1.8114 2.4935 9 8 1.5066 0.6717 2.7556 10 7 1.9289 2.7314 3.4748 11 6 1.5116 2.3903 4.8370 12 6 2.3758 1.2637 5.4070 13 6 1.5428 3.6413 5.7592 14 6 0.1949 4.3289 5.4556 15 7 -0.7045 3.3034 4.9069 16 6 -1.9923 3.5115 4.4904 17 1 -2.5421 2.7122 4.0158 18 6 -2.5909 4.7498 4.6780 19 7 -1.8843 5.7589 5.1415 20 14 -4.3993 4.9839 4.2727 21 1 -5.2101 4.8012 5.5032 22 1 -4.6134 6.3525 3.7376 23 1 -4.8119 3.9844 3.2550 24 6 0.0096 2.0139 4.8798 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.4060 1.7142 -2.1082 31 1 3.1655 4.1026 -1.3498 32 1 2.8751 4.2532 1.3060 33 1 2.2665 3.6194 3.2789 34 1 2.2453 0.3650 4.8040 35 1 3.4233 1.5645 5.3887 36 1 2.0744 1.0588 6.4342 37 1 2.3760 4.2931 5.4966 38 1 1.5991 3.3491 6.8078 39 1 0.3407 5.1238 4.7244 40 1 -0.2281 4.7412 6.3717 41 1 -2.3027 6.6240 5.2730 42 1 -0.2119 1.4387 5.7788 43 1 -0.2649 1.4469 3.9902 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046835532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:01 Heat of formation + Delta-G solvation = 18.987720 kcal Electronic energy + Delta-G solvation = -24434.680908 eV Core-core repulsion = 21094.641068 eV Total energy + Delta-G solvation = -3340.039840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.33614 -40.77543 -38.61155 -35.78933 -35.02675 -33.63113 -31.92970 -30.48418 -30.22640 -29.66403 -27.52891 -25.50194 -24.57461 -23.82879 -22.15974 -21.66970 -20.57300 -20.21064 -19.05873 -18.55289 -17.08723 -16.78283 -16.65635 -16.29910 -15.70441 -15.59537 -15.45734 -14.92802 -14.82009 -14.55648 -14.12961 -13.90575 -13.57566 -13.43592 -13.42036 -13.22215 -13.14485 -13.00710 -12.89662 -12.83168 -12.75218 -12.16744 -12.12977 -12.05135 -11.95155 -11.71015 -11.55148 -10.71748 -10.67030 -10.01389 -9.65741 -9.11319 -8.85585 -7.88203 -5.20748 0.56836 1.41369 1.43075 1.51747 1.71615 1.90874 2.41655 2.46604 2.54195 3.29911 3.53559 3.70103 3.82829 3.92531 4.04671 4.10974 4.18390 4.19487 4.37194 4.46351 4.49966 4.63495 4.69328 4.73486 4.81173 4.86099 4.86833 4.92525 5.01862 5.07652 5.15828 5.19939 5.32084 5.37242 5.41026 5.63951 5.68897 5.76462 5.89495 6.06548 6.19077 6.40732 6.65562 7.10275 7.30203 7.76190 8.41133 9.22269 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.005582 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.211156 B = 5014.795631 C = 5750.662702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.098 3.902 3 N -0.415 5.415 4 C 0.021 3.979 5 C -0.221 4.221 6 C -0.147 4.147 7 C -0.083 4.083 8 C 0.586 3.414 9 O -0.574 6.574 10 N -0.691 5.691 11 C 0.170 3.830 12 C -0.138 4.138 13 C -0.128 4.128 14 C 0.185 3.815 15 N -0.619 5.619 16 C -0.242 4.242 17 H 0.065 0.935 18 C -0.058 4.058 19 N -0.943 5.943 20 Si 0.972 3.028 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.276 1.276 24 C 0.131 3.869 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.023 0.977 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.205 0.795 31 H 0.164 0.836 32 H 0.149 0.851 33 H 0.406 0.594 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.012 0.988 40 H 0.013 0.987 41 H 0.248 0.752 42 H 0.027 0.973 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.195 -8.009 -10.106 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.022 4.022 3 N -0.088 5.088 4 C -0.114 4.114 5 C -0.244 4.244 6 C -0.174 4.174 7 C -0.196 4.196 8 C 0.375 3.625 9 O -0.456 6.456 10 N -0.341 5.341 11 C 0.083 3.917 12 C -0.197 4.197 13 C -0.166 4.166 14 C 0.060 3.940 15 N -0.345 5.345 16 C -0.371 4.371 17 H 0.083 0.917 18 C -0.251 4.251 19 N -0.592 5.592 20 Si 0.800 3.200 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.201 1.201 24 C 0.005 3.995 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.042 0.958 28 H 0.144 0.856 29 H 0.104 0.896 30 H 0.222 0.778 31 H 0.181 0.819 32 H 0.167 0.833 33 H 0.242 0.758 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.030 0.970 40 H 0.031 0.969 41 H 0.058 0.942 42 H 0.044 0.956 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 12.650 -9.028 -9.870 18.410 hybrid contribution -1.324 0.931 -0.049 1.620 sum 11.326 -8.096 -9.919 17.094 Atomic orbital electron populations 1.22007 0.94753 1.03529 1.01178 1.22096 0.95350 0.79185 1.05566 1.44281 1.46835 1.12125 1.05589 1.22663 1.03104 0.92998 0.92632 1.21143 1.10222 0.98446 0.94636 1.21654 1.03188 0.95588 0.96960 1.20135 1.16915 0.94370 0.88225 1.17217 0.76507 0.84704 0.84056 1.90685 1.50143 1.20560 1.84201 1.45442 1.65062 1.15491 1.08058 1.21421 0.93043 0.96112 0.81144 1.21920 0.99297 0.97337 1.01108 1.23151 0.98129 0.95637 0.99723 1.20950 0.87304 0.89996 0.95755 1.44657 1.10990 1.04711 1.74185 1.19275 0.88658 0.97042 1.32119 0.91659 1.25530 1.02023 0.95667 1.01905 1.70148 1.35413 1.01094 1.52564 0.85163 0.80333 0.76856 0.77629 1.21140 1.21597 1.20103 1.21952 0.91535 0.88227 0.97784 0.91675 0.88976 0.95785 0.85567 0.89590 0.77822 0.81884 0.83340 0.75831 0.92329 0.90731 0.90517 0.88522 0.88738 0.96968 0.96861 0.94243 0.95580 0.95556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 10.22 71.98 0.74 -3.18 16 2 C 0.10 2.24 6.14 86.38 0.53 2.77 16 3 N -0.41 -11.00 2.76 -511.03 -1.41 -12.41 16 4 C 0.02 0.45 11.36 83.48 0.95 1.40 16 5 C -0.22 -5.01 10.81 22.01 0.24 -4.77 16 6 C -0.15 -4.09 10.35 22.57 0.23 -3.85 16 7 C -0.08 -2.66 6.89 40.35 0.28 -2.39 16 8 C 0.59 21.23 7.12 86.45 0.62 21.84 16 9 O -0.57 -22.80 11.36 -4.34 -0.05 -22.85 16 10 N -0.69 -23.75 5.16 -420.09 -2.17 -25.92 16 11 C 0.17 6.03 0.83 5.10 0.00 6.03 16 12 C -0.14 -4.06 8.59 71.98 0.62 -3.44 16 13 C -0.13 -4.44 6.00 31.88 0.19 -4.24 16 14 C 0.18 9.02 5.38 86.73 0.47 9.49 16 15 N -0.62 -33.15 3.40 -691.98 -2.35 -35.50 16 16 C -0.24 -14.34 10.27 84.03 0.86 -13.47 16 17 H 0.07 3.87 7.84 -2.91 -0.02 3.85 16 18 C -0.06 -3.39 5.48 84.86 0.47 -2.92 16 19 N -0.94 -57.13 10.35 21.65 0.22 -56.90 16 20 Si 0.97 47.41 29.56 68.60 2.03 49.44 16 21 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 24 C 0.13 5.98 6.11 86.85 0.53 6.51 16 25 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.02 0.81 7.83 -2.39 -0.02 0.79 16 28 H 0.13 1.77 8.12 -2.39 -0.02 1.75 16 29 H 0.09 2.31 6.63 -2.39 -0.02 2.29 16 30 H 0.21 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.15 3.69 7.45 -2.91 -0.02 3.67 16 33 H 0.41 12.57 7.40 -92.71 -0.69 11.89 16 34 H 0.06 1.93 6.37 -2.38 -0.02 1.91 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 2.03 8.12 -2.39 -0.02 2.01 16 37 H 0.10 2.76 8.05 -2.38 -0.02 2.74 16 38 H 0.09 2.93 8.03 -2.39 -0.02 2.91 16 39 H 0.01 0.65 7.54 -2.39 -0.02 0.64 16 40 H 0.01 0.72 7.36 -2.39 -0.02 0.71 16 41 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 42 H 0.03 1.19 8.04 -2.39 -0.02 1.17 16 43 H 0.03 1.32 6.48 -2.39 -0.02 1.30 16 Total: -1.00 -74.47 343.55 3.31 -71.16 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.32 Total: 23.22 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.72 Total: 9.76 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -5.70 Total: -130.73 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -74.47 3.31 -71.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046835532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.152 kcal (2) G-P(sol) polarization free energy of solvation -74.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds