Wall clock time and date at job start Tue Mar 31 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47155 * 2 1 4 4 C 1.35539 * 125.67588 * 265.45607 * 3 2 1 5 5 C 1.35451 * 108.87190 * 180.02562 * 4 3 2 6 6 C 1.39832 * 107.86435 * 359.97438 * 5 4 3 7 7 C 1.37648 * 125.68349 * 85.47553 * 3 2 1 8 8 C 1.46683 * 126.23065 * 359.71640 * 7 3 2 9 9 O 1.21692 * 119.99828 * 355.03309 * 8 7 3 10 10 N 1.34777 * 120.00075 * 175.03048 * 8 7 3 11 11 C 1.46494 * 119.99729 * 184.94484 * 10 8 7 12 12 C 1.53002 * 110.64263 * 298.31294 * 11 10 8 13 13 C 1.55163 * 110.71617 * 174.98204 * 11 10 8 14 14 C 1.54914 * 101.57930 * 277.13519 * 13 11 10 15 15 N 1.47429 * 104.83132 * 322.99429 * 14 13 11 16 16 C 1.36939 * 125.64316 * 204.09068 * 15 14 13 17 17 H 1.08005 * 119.99508 * 180.02562 * 16 15 14 18 18 C 1.38808 * 120.00140 * 0.04255 * 16 15 14 19 19 N 1.31616 * 120.00215 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99658 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47588 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47131 * 120.00030 * 20 18 16 23 23 H 1.48504 * 109.47129 * 239.99664 * 20 18 16 24 24 C 1.47021 * 108.70488 * 24.12616 * 15 14 13 25 25 H 1.09007 * 109.47058 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47059 * 300.00149 * 1 2 3 27 27 H 1.08997 * 109.46896 * 60.00954 * 1 2 3 28 28 H 1.09001 * 109.47314 * 239.99169 * 2 1 3 29 29 H 1.08997 * 109.46673 * 119.99797 * 2 1 3 30 30 H 1.07999 * 125.56263 * 359.97438 * 4 3 2 31 31 H 1.08002 * 126.06478 * 180.02562 * 5 4 3 32 32 H 1.08006 * 126.45562 * 180.02562 * 6 5 4 33 33 H 0.97001 * 119.99461 * 4.94740 * 10 8 7 34 34 H 1.09000 * 109.46947 * 59.30351 * 12 11 10 35 35 H 1.09005 * 109.47041 * 179.30313 * 12 11 10 36 36 H 1.09004 * 109.46881 * 299.29816 * 12 11 10 37 37 H 1.08994 * 111.00714 * 35.20907 * 13 11 10 38 38 H 1.09000 * 111.00189 * 159.06813 * 13 11 10 39 39 H 1.08999 * 110.36787 * 204.15355 * 14 13 11 40 40 H 1.09002 * 110.36520 * 81.82944 * 14 13 11 41 41 H 0.97001 * 119.99995 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.88094 * 239.52650 * 24 15 14 43 43 H 1.09001 * 110.00700 * 118.42890 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3641 2.0973 -1.0976 5 6 2.7676 3.3300 -0.7072 6 6 2.6716 3.3914 0.6865 7 6 2.2028 2.1675 1.1146 8 6 1.9418 1.7768 2.5041 9 8 1.4366 0.6969 2.7478 10 7 2.2616 2.6139 3.5109 11 6 2.1020 2.1816 4.9015 12 6 0.6356 1.8660 5.2032 13 6 2.6479 3.2577 5.8769 14 6 4.1629 2.9343 5.8804 15 7 4.2349 1.4634 5.8097 16 6 5.2828 0.6942 6.2404 17 1 5.2391 -0.3806 6.1436 18 6 6.4008 1.2957 6.8016 19 7 6.4540 2.6056 6.9193 20 14 7.8304 0.2463 7.3884 21 1 7.5255 -1.1865 7.1448 22 1 9.0596 0.6245 6.6458 23 1 8.0425 0.4667 8.8416 24 6 2.9959 0.9595 5.1995 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.3250 1.7427 -2.1169 31 1 3.1031 4.1247 -1.3571 32 1 2.9183 4.2380 1.3101 33 1 2.5974 3.5025 3.3146 34 1 0.2889 1.0770 4.5359 35 1 0.5405 1.5350 6.2375 36 1 0.0326 2.7614 5.0515 37 1 2.4636 4.2615 5.4942 38 1 2.2201 3.1359 6.8721 39 1 4.6252 3.2930 6.8000 40 1 4.6479 3.3800 5.0120 41 1 7.2355 3.0259 7.3111 42 1 2.4878 0.2886 5.8922 43 1 3.2241 0.4324 4.2730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046835533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:06 Heat of formation + Delta-G solvation = 41.368726 kcal Electronic energy + Delta-G solvation = -24171.947227 eV Core-core repulsion = 20832.877900 eV Total energy + Delta-G solvation = -3339.069327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34223 -39.43661 -37.07257 -34.44293 -33.74079 -31.94375 -30.24650 -29.31472 -28.84223 -28.47619 -25.65258 -23.85078 -23.55340 -22.56544 -20.65395 -20.36635 -19.36211 -18.81447 -17.78925 -16.79440 -15.72732 -15.44926 -15.24007 -14.69101 -14.53790 -14.15707 -13.92473 -13.65845 -13.61638 -13.08510 -12.71426 -12.45153 -12.36451 -12.28380 -12.19118 -12.03093 -11.87337 -11.68796 -11.52988 -11.24299 -10.91323 -10.85467 -10.37563 -10.31806 -10.03725 -9.93044 -9.64024 -9.29286 -8.71113 -8.64622 -8.61608 -8.11252 -6.78076 -5.62463 -3.02688 1.63969 2.72003 2.81266 3.41894 3.47649 3.50119 3.56771 3.71567 4.52127 4.66358 4.89653 4.97677 4.99620 5.21603 5.23781 5.36865 5.42093 5.42731 5.52861 5.59808 5.60726 5.75994 5.77273 6.01244 6.07107 6.10152 6.19967 6.23037 6.27040 6.39358 6.48799 6.54166 6.73393 6.78123 6.87720 7.05898 7.17580 7.27019 7.49686 7.66426 7.83659 7.92100 8.38223 8.55525 9.26051 9.86780 10.51735 11.41938 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.004451 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.256609 B = 6289.095340 C = 6590.030722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.407 5.407 4 C 0.006 3.994 5 C -0.208 4.208 6 C -0.146 4.146 7 C -0.041 4.041 8 C 0.589 3.411 9 O -0.547 6.547 10 N -0.695 5.695 11 C 0.162 3.838 12 C -0.150 4.150 13 C -0.146 4.146 14 C 0.153 3.847 15 N -0.604 5.604 16 C -0.217 4.217 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.924 5.924 20 Si 0.913 3.087 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.138 3.862 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.164 0.836 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.399 0.601 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.011 0.989 41 H 0.251 0.749 42 H 0.030 0.970 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.880 1.639 -13.692 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.081 5.081 4 C -0.129 4.129 5 C -0.233 4.233 6 C -0.172 4.172 7 C -0.155 4.155 8 C 0.377 3.623 9 O -0.427 6.427 10 N -0.346 5.346 11 C 0.077 3.923 12 C -0.208 4.208 13 C -0.185 4.185 14 C 0.028 3.972 15 N -0.330 5.330 16 C -0.345 4.345 17 H 0.094 0.906 18 C -0.207 4.207 19 N -0.573 5.573 20 Si 0.744 3.256 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.012 3.988 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.181 0.819 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.234 0.766 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.029 0.971 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -12.152 0.475 -13.365 18.069 hybrid contribution 1.071 -0.020 -0.039 1.072 sum -11.080 0.455 -13.404 17.397 Atomic orbital electron populations 1.22048 0.94107 1.02857 1.02780 1.21998 0.95926 0.79702 1.04740 1.44045 1.47168 1.11651 1.05193 1.21935 1.06260 0.93131 0.91532 1.20772 1.09868 0.97471 0.95141 1.21351 1.04129 0.96192 0.95503 1.20229 1.14105 0.93097 0.88089 1.16903 0.78022 0.84189 0.83194 1.90729 1.44487 1.22580 1.84885 1.45647 1.66067 1.17481 1.05356 1.21353 0.94911 0.96579 0.79490 1.22061 0.94706 1.01920 1.02144 1.23363 1.00993 0.96167 0.98023 1.21943 0.88504 0.84201 1.02582 1.44504 1.15348 1.02375 1.70742 1.19134 0.93545 0.89970 1.31878 0.90565 1.24748 0.98318 0.95907 1.01766 1.69785 1.29231 1.07415 1.50876 0.86010 0.82309 0.79167 0.78122 1.20589 1.21818 1.21755 1.21581 0.87673 0.93323 0.96257 0.90924 0.91188 0.92701 0.89713 0.87628 0.81853 0.84287 0.84036 0.76626 0.90776 0.91841 0.93187 0.91827 0.90460 0.87433 0.97077 0.93868 0.95207 0.95155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.17 37.16 0.38 -1.27 16 2 C 0.10 1.12 6.10 -4.04 -0.02 1.09 16 3 N -0.41 -5.41 2.76 -112.88 -0.31 -5.72 16 4 C 0.01 0.07 11.37 -16.91 -0.19 -0.12 16 5 C -0.21 -2.46 10.81 -39.98 -0.43 -2.89 16 6 C -0.15 -1.96 10.35 -39.12 -0.41 -2.37 16 7 C -0.04 -0.63 6.89 -81.98 -0.56 -1.20 16 8 C 0.59 10.14 6.94 -12.85 -0.09 10.05 16 9 O -0.55 -10.31 11.26 5.20 0.06 -10.25 16 10 N -0.70 -11.58 5.13 -47.20 -0.24 -11.83 16 11 C 0.16 2.95 0.81 -129.99 -0.11 2.85 16 12 C -0.15 -2.39 8.45 37.16 0.31 -2.08 16 13 C -0.15 -2.69 6.09 -24.58 -0.15 -2.84 16 14 C 0.15 3.65 5.87 -2.52 -0.01 3.64 16 15 N -0.60 -15.82 3.39 -170.07 -0.58 -16.40 16 16 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 17 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 19 N -0.92 -26.99 10.09 55.49 0.56 -26.43 16 20 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C 0.14 3.13 6.16 -3.07 -0.02 3.11 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.89 7.62 -51.93 -0.40 0.50 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 29 H 0.11 1.46 6.72 -51.93 -0.35 1.12 16 30 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.14 1.66 7.45 -52.48 -0.39 1.27 16 33 H 0.40 5.88 7.37 -40.82 -0.30 5.58 16 34 H 0.07 1.27 6.21 -51.93 -0.32 0.94 16 35 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 38 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 39 H 0.11 2.90 5.87 -51.93 -0.31 2.59 16 40 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.03 0.68 7.80 -51.93 -0.41 0.28 16 43 H 0.03 0.75 6.62 -51.93 -0.34 0.40 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -32.51 342.11 -8.51 -41.02 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.57 Total: 5.84 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.55 Total: 1.15 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.57 Total: -60.38 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.06 Total: -10.25 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.51 -8.51 -41.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046835533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.389 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds