Wall clock time and date at job start Tue Mar 31 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47155 * 2 1 4 4 C 1.35539 * 125.67588 * 265.45607 * 3 2 1 5 5 C 1.35451 * 108.87190 * 180.02562 * 4 3 2 6 6 C 1.39832 * 107.86435 * 359.97438 * 5 4 3 7 7 C 1.37648 * 125.68349 * 85.47553 * 3 2 1 8 8 C 1.46683 * 126.23065 * 359.71640 * 7 3 2 9 9 O 1.21692 * 119.99828 * 355.03309 * 8 7 3 10 10 N 1.34777 * 120.00075 * 175.03048 * 8 7 3 11 11 C 1.46494 * 119.99729 * 184.94484 * 10 8 7 12 12 C 1.53002 * 110.64263 * 298.31294 * 11 10 8 13 13 C 1.55163 * 110.71617 * 174.98204 * 11 10 8 14 14 C 1.54914 * 101.57930 * 277.13519 * 13 11 10 15 15 N 1.47429 * 104.83132 * 322.99429 * 14 13 11 16 16 C 1.36939 * 125.64316 * 204.09068 * 15 14 13 17 17 H 1.08005 * 119.99508 * 180.02562 * 16 15 14 18 18 C 1.38808 * 120.00140 * 0.04255 * 16 15 14 19 19 N 1.31616 * 120.00215 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99658 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47588 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47131 * 120.00030 * 20 18 16 23 23 H 1.48504 * 109.47129 * 239.99664 * 20 18 16 24 24 C 1.47021 * 108.70488 * 24.12616 * 15 14 13 25 25 H 1.09007 * 109.47058 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47059 * 300.00149 * 1 2 3 27 27 H 1.08997 * 109.46896 * 60.00954 * 1 2 3 28 28 H 1.09001 * 109.47314 * 239.99169 * 2 1 3 29 29 H 1.08997 * 109.46673 * 119.99797 * 2 1 3 30 30 H 1.07999 * 125.56263 * 359.97438 * 4 3 2 31 31 H 1.08002 * 126.06478 * 180.02562 * 5 4 3 32 32 H 1.08006 * 126.45562 * 180.02562 * 6 5 4 33 33 H 0.97001 * 119.99461 * 4.94740 * 10 8 7 34 34 H 1.09000 * 109.46947 * 59.30351 * 12 11 10 35 35 H 1.09005 * 109.47041 * 179.30313 * 12 11 10 36 36 H 1.09004 * 109.46881 * 299.29816 * 12 11 10 37 37 H 1.08994 * 111.00714 * 35.20907 * 13 11 10 38 38 H 1.09000 * 111.00189 * 159.06813 * 13 11 10 39 39 H 1.08999 * 110.36787 * 204.15355 * 14 13 11 40 40 H 1.09002 * 110.36520 * 81.82944 * 14 13 11 41 41 H 0.97001 * 119.99995 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.88094 * 239.52650 * 24 15 14 43 43 H 1.09001 * 110.00700 * 118.42890 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3641 2.0973 -1.0976 5 6 2.7676 3.3300 -0.7072 6 6 2.6716 3.3914 0.6865 7 6 2.2028 2.1675 1.1146 8 6 1.9418 1.7768 2.5041 9 8 1.4366 0.6969 2.7478 10 7 2.2616 2.6139 3.5109 11 6 2.1020 2.1816 4.9015 12 6 0.6356 1.8660 5.2032 13 6 2.6479 3.2577 5.8769 14 6 4.1629 2.9343 5.8804 15 7 4.2349 1.4634 5.8097 16 6 5.2828 0.6942 6.2404 17 1 5.2391 -0.3806 6.1436 18 6 6.4008 1.2957 6.8016 19 7 6.4540 2.6056 6.9193 20 14 7.8304 0.2463 7.3884 21 1 7.5255 -1.1865 7.1448 22 1 9.0596 0.6245 6.6458 23 1 8.0425 0.4667 8.8416 24 6 2.9959 0.9595 5.1995 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.3250 1.7427 -2.1169 31 1 3.1031 4.1247 -1.3571 32 1 2.9183 4.2380 1.3101 33 1 2.5974 3.5025 3.3146 34 1 0.2889 1.0770 4.5359 35 1 0.5405 1.5350 6.2375 36 1 0.0326 2.7614 5.0515 37 1 2.4636 4.2615 5.4942 38 1 2.2201 3.1359 6.8721 39 1 4.6252 3.2930 6.8000 40 1 4.6479 3.3800 5.0120 41 1 7.2355 3.0259 7.3111 42 1 2.4878 0.2886 5.8922 43 1 3.2241 0.4324 4.2730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046835533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:05 Heat of formation + Delta-G solvation = 21.039931 kcal Electronic energy + Delta-G solvation = -24172.828750 eV Core-core repulsion = 20832.877900 eV Total energy + Delta-G solvation = -3339.950850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.36084 -40.83646 -38.64860 -35.84688 -35.03258 -33.63286 -31.92870 -30.47907 -30.21580 -29.68675 -27.56033 -25.50418 -24.54851 -23.82182 -22.24368 -21.68146 -20.55729 -20.23663 -19.07842 -18.60242 -17.17367 -16.73859 -16.70445 -16.36194 -15.70443 -15.56517 -15.25261 -15.08994 -14.65735 -14.58100 -14.21532 -14.06033 -13.61166 -13.45339 -13.31801 -13.26996 -13.09429 -13.03441 -12.83901 -12.81763 -12.79434 -12.13724 -12.08158 -12.03960 -11.95325 -11.70293 -11.54771 -10.76738 -10.70270 -10.05292 -9.66571 -9.12239 -8.89445 -7.79706 -5.23361 0.54974 1.44285 1.44979 1.55528 1.71065 1.88337 2.37761 2.47654 2.50645 3.29714 3.56679 3.69872 3.81571 3.90167 4.01185 4.12718 4.17396 4.19104 4.38251 4.47584 4.49815 4.62641 4.66774 4.77026 4.81274 4.85155 4.88080 4.90582 5.00734 5.08167 5.18300 5.19841 5.31291 5.34355 5.41682 5.60467 5.66955 5.79673 5.88252 6.05654 6.30001 6.39085 6.63018 7.10108 7.27286 7.75913 8.39757 9.21955 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.004451 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.256609 B = 6289.095340 C = 6590.030722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.094 3.906 3 N -0.415 5.415 4 C 0.022 3.978 5 C -0.220 4.220 6 C -0.145 4.145 7 C -0.085 4.085 8 C 0.584 3.416 9 O -0.572 6.572 10 N -0.695 5.695 11 C 0.174 3.826 12 C -0.140 4.140 13 C -0.128 4.128 14 C 0.156 3.844 15 N -0.622 5.622 16 C -0.243 4.243 17 H 0.069 0.931 18 C -0.060 4.060 19 N -0.943 5.943 20 Si 0.978 3.022 21 H -0.273 1.273 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.139 3.861 25 H 0.088 0.912 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.204 0.796 31 H 0.165 0.835 32 H 0.152 0.848 33 H 0.408 0.592 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.077 0.923 40 H -0.009 1.009 41 H 0.249 0.751 42 H 0.024 0.976 43 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.569 2.255 -15.408 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 N -0.088 5.088 4 C -0.114 4.114 5 C -0.243 4.243 6 C -0.172 4.172 7 C -0.198 4.198 8 C 0.373 3.627 9 O -0.454 6.454 10 N -0.345 5.345 11 C 0.087 3.913 12 C -0.198 4.198 13 C -0.166 4.166 14 C 0.031 3.969 15 N -0.349 5.349 16 C -0.372 4.372 17 H 0.087 0.913 18 C -0.252 4.252 19 N -0.593 5.593 20 Si 0.806 3.194 21 H -0.198 1.198 22 H -0.217 1.217 23 H -0.212 1.212 24 C 0.012 3.988 25 H 0.106 0.894 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.136 0.864 29 H 0.091 0.909 30 H 0.221 0.779 31 H 0.182 0.818 32 H 0.170 0.830 33 H 0.244 0.756 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.009 0.991 41 H 0.059 0.941 42 H 0.041 0.959 43 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -12.861 1.105 -15.084 19.853 hybrid contribution 1.321 -0.232 0.399 1.399 sum -11.540 0.873 -14.686 18.698 Atomic orbital electron populations 1.21968 0.93254 1.03655 1.01967 1.22086 0.96630 0.79155 1.04754 1.44278 1.47189 1.12131 1.05217 1.22665 1.03586 0.92627 0.92517 1.21156 1.10011 0.98598 0.94580 1.21675 1.02906 0.95788 0.96810 1.20113 1.17350 0.94619 0.87701 1.17272 0.77417 0.83783 0.84225 1.90707 1.45677 1.23570 1.85449 1.45557 1.66319 1.17962 1.04702 1.21167 0.95320 0.94314 0.80464 1.21970 0.93010 1.02684 1.02137 1.23217 0.96413 0.98084 0.98905 1.21756 0.92193 0.82936 1.00019 1.44782 1.15838 1.03380 1.70853 1.19404 0.94984 0.90209 1.32611 0.91295 1.25541 1.00584 0.97207 1.01909 1.70017 1.29592 1.08608 1.51076 0.85020 0.78871 0.77961 0.77520 1.19815 1.21708 1.21186 1.21646 0.87337 0.95270 0.94500 0.89372 0.94248 0.91039 0.86354 0.90876 0.77918 0.81782 0.83017 0.75559 0.92158 0.91186 0.90552 0.88120 0.89534 0.90468 0.99109 0.94138 0.95853 0.97780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 10.17 71.98 0.73 -2.22 16 2 C 0.09 2.08 6.10 86.38 0.53 2.61 16 3 N -0.41 -10.49 2.76 -511.03 -1.41 -11.90 16 4 C 0.02 0.42 11.37 83.48 0.95 1.37 16 5 C -0.22 -4.60 10.81 22.01 0.24 -4.37 16 6 C -0.15 -3.73 10.35 22.57 0.23 -3.49 16 7 C -0.08 -2.57 6.89 40.35 0.28 -2.29 16 8 C 0.58 20.48 6.94 86.45 0.60 21.08 16 9 O -0.57 -22.44 11.26 -4.32 -0.05 -22.49 16 10 N -0.69 -23.12 5.13 -421.46 -2.16 -25.28 16 11 C 0.17 6.28 0.81 4.79 0.00 6.28 16 12 C -0.14 -4.30 8.45 71.98 0.61 -3.70 16 13 C -0.13 -4.54 6.09 31.99 0.19 -4.34 16 14 C 0.16 7.61 5.87 86.86 0.51 8.12 16 15 N -0.62 -33.68 3.39 -691.97 -2.35 -36.02 16 16 C -0.24 -14.37 10.27 84.03 0.86 -13.50 16 17 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 19 N -0.94 -56.27 10.09 21.65 0.22 -56.05 16 20 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 C 0.14 6.49 6.16 86.73 0.53 7.02 16 25 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.04 1.01 7.62 -2.39 -0.02 0.99 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.12 1.76 8.12 -2.39 -0.02 1.74 16 29 H 0.07 2.11 6.72 -2.39 -0.02 2.09 16 30 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.15 3.38 7.45 -2.91 -0.02 3.36 16 33 H 0.41 11.80 7.37 -92.71 -0.68 11.12 16 34 H 0.06 2.05 6.21 -2.39 -0.01 2.04 16 35 H 0.07 2.05 8.12 -2.38 -0.02 2.03 16 36 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.10 2.86 8.04 -2.39 -0.02 2.84 16 38 H 0.09 2.96 8.05 -2.39 -0.02 2.94 16 39 H 0.08 4.27 5.87 -2.39 -0.01 4.26 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.02 1.11 7.80 -2.39 -0.02 1.09 16 43 H 0.00 0.22 6.62 -2.39 -0.02 0.20 16 Total: -1.00 -73.45 342.11 3.34 -70.11 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.32 Total: 23.18 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 6.74 Total: 9.57 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -5.70 Total: -129.26 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.05 Total: -22.49 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -73.45 3.34 -70.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046835533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.152 kcal (2) G-P(sol) polarization free energy of solvation -73.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds