Wall clock time and date at job start Tue Mar 31 2020 07:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35529 * 125.67763 * 2 1 4 4 C 1.35457 * 108.87289 * 180.02562 * 3 2 1 5 5 C 1.39835 * 107.86317 * 359.74348 * 4 3 2 6 6 C 1.37657 * 125.67785 * 180.02562 * 2 1 3 7 7 C 1.46682 * 126.23082 * 359.97438 * 6 2 1 8 8 O 1.21685 * 120.00243 * 5.33562 * 7 6 2 9 9 N 1.34778 * 119.99426 * 185.32968 * 7 6 2 10 10 C 1.46501 * 119.99766 * 184.96605 * 9 7 6 11 11 H 1.09006 * 109.50562 * 324.94398 * 10 9 7 12 12 C 1.52428 * 109.29685 * 204.86380 * 10 9 7 13 13 C 1.47097 * 114.21900 * 154.94968 * 12 10 9 14 14 C 1.54861 * 110.31987 * 62.78969 * 13 12 10 15 15 N 1.44586 * 109.60262 * 288.73189 * 14 13 12 16 16 C 1.36939 * 118.64341 * 270.75226 * 15 14 13 17 17 H 1.07994 * 120.00175 * 30.60058 * 16 15 14 18 18 C 1.38812 * 119.99528 * 210.60640 * 16 15 14 19 19 N 1.31618 * 120.00337 * 10.07975 * 18 16 15 20 20 Si 1.86808 * 119.99651 * 190.07744 * 18 16 15 21 21 H 1.48496 * 109.46804 * 90.00112 * 20 18 16 22 22 H 1.48497 * 109.47062 * 209.99778 * 20 18 16 23 23 H 1.48494 * 109.47195 * 330.00225 * 20 18 16 24 24 C 1.47600 * 122.71105 * 90.72804 * 15 14 13 25 25 C 1.50876 * 109.48824 * 85.00230 * 10 9 7 26 26 H 1.08997 * 109.47099 * 264.31240 * 1 2 3 27 27 H 1.09004 * 109.47130 * 24.31843 * 1 2 3 28 28 H 1.09002 * 109.46984 * 144.31940 * 1 2 3 29 29 H 1.08000 * 125.56685 * 0.04674 * 3 2 1 30 30 H 1.07998 * 126.06763 * 179.97438 * 4 3 2 31 31 H 1.07993 * 126.45881 * 180.26118 * 5 4 3 32 32 H 0.97000 * 120.00384 * 4.97088 * 9 7 6 33 33 H 1.09000 * 108.57730 * 33.71930 * 12 10 9 34 34 H 1.09000 * 108.43612 * 276.07553 * 12 10 9 35 35 H 1.09000 * 109.32896 * 302.53071 * 13 12 10 36 36 H 1.08995 * 109.18620 * 182.96186 * 13 12 10 37 37 H 1.09001 * 109.44825 * 168.69762 * 14 13 12 38 38 H 1.08993 * 109.43002 * 48.75791 * 14 13 12 39 39 H 0.97002 * 119.99977 * 179.97438 * 19 18 16 40 40 H 1.08997 * 108.94909 * 197.18480 * 24 15 14 41 41 H 1.09000 * 108.87652 * 78.50605 * 24 15 14 42 42 H 1.09003 * 109.36623 * 91.66411 * 25 10 9 43 43 H 1.08998 * 109.37242 * 331.92208 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7093 -0.0006 5 6 3.5780 -0.6888 0.0050 6 6 2.2679 -1.1182 -0.0005 7 6 1.8124 -2.5125 -0.0006 8 8 0.6260 -2.7651 -0.0982 9 7 2.7080 -3.5139 0.1073 10 6 2.2663 -4.9065 -0.0019 11 1 1.2752 -5.0097 0.4401 12 6 3.2513 -5.8066 0.7350 13 6 2.6750 -7.0769 1.2018 14 6 2.2027 -7.9280 -0.0027 15 7 1.0242 -7.3284 -0.5878 16 6 -0.2054 -7.6959 -0.1100 17 1 -0.3179 -7.9878 0.9237 18 6 -1.3071 -7.6934 -0.9544 19 7 -1.1427 -7.5329 -2.2504 20 14 -3.0232 -7.9179 -0.2513 21 1 -3.5949 -6.5910 0.0919 22 1 -3.8876 -8.5838 -1.2585 23 1 -2.9512 -8.7571 0.9716 24 6 1.0919 -6.3363 -1.6785 25 6 2.2131 -5.3051 -1.4561 26 1 -0.3633 -0.1018 1.0226 27 1 -0.3633 0.9365 -0.4232 28 1 -0.3633 -0.8348 -0.5994 29 1 1.9082 2.1236 0.0007 30 1 4.4133 1.3612 -0.0011 31 1 4.4583 -1.3144 0.0100 32 1 3.6449 -3.3126 0.2574 33 1 3.6386 -5.2645 1.5977 34 1 4.0824 -6.0288 0.0657 35 1 1.8255 -6.8701 1.8527 36 1 3.4308 -7.6295 1.7598 37 1 1.9665 -8.9367 0.3361 38 1 2.9959 -7.9720 -0.7488 39 1 -1.9126 -7.5315 -2.8404 40 1 0.1375 -5.8135 -1.7411 41 1 1.2719 -6.8575 -2.6187 42 1 3.1687 -5.7418 -1.7464 43 1 2.0189 -4.4228 -2.0659 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052215249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:50 Heat of formation + Delta-G solvation = 35.270967 kcal Electronic energy + Delta-G solvation = -24054.632478 eV Core-core repulsion = 20715.298733 eV Total energy + Delta-G solvation = -3339.333746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.34242 -39.24932 -37.41382 -34.68263 -33.15176 -32.55839 -31.04794 -30.52533 -28.93607 -26.50985 -25.93675 -24.13770 -23.28223 -22.14062 -20.60740 -20.13943 -19.27618 -19.13618 -17.72632 -16.54574 -15.86989 -15.61888 -15.47502 -14.99387 -14.37865 -14.19242 -13.86344 -13.60780 -13.42370 -13.22581 -13.09912 -12.81464 -12.42482 -12.38500 -12.31299 -12.03361 -11.83516 -11.56308 -11.03345 -10.81862 -10.75790 -10.35938 -10.16613 -10.01589 -9.92616 -9.65232 -9.54937 -9.52697 -8.79523 -8.71544 -8.31955 -8.20803 -6.51976 -5.68728 -3.18106 1.56380 2.68726 2.70876 3.44590 3.50947 3.51234 3.57528 3.62680 4.57759 4.77252 4.89550 4.93893 5.21911 5.23191 5.33086 5.35659 5.37087 5.54633 5.61020 5.64703 5.80208 5.98297 6.05611 6.11554 6.16623 6.26572 6.35880 6.49325 6.54785 6.65128 6.70658 6.74393 6.82630 6.91525 6.94931 7.06840 7.12648 7.17213 7.53064 7.81341 7.84288 7.92056 8.52672 8.59484 9.34283 9.99591 10.45798 11.38393 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017858 B = 0.004700 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.566622 B = 5955.734081 C = 6985.844012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.410 5.410 3 C 0.006 3.994 4 C -0.210 4.210 5 C -0.149 4.149 6 C -0.042 4.042 7 C 0.580 3.420 8 O -0.537 6.537 9 N -0.715 5.715 10 C 0.156 3.844 11 H 0.104 0.896 12 C -0.107 4.107 13 C -0.145 4.145 14 C 0.157 3.843 15 N -0.591 5.591 16 C -0.259 4.259 17 H 0.063 0.937 18 C 0.010 3.990 19 N -0.904 5.904 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.184 3.816 25 C -0.148 4.148 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.166 0.834 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.393 0.607 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.032 0.968 39 H 0.252 0.748 40 H 0.075 0.925 41 H 0.026 0.974 42 H 0.047 0.953 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.489 14.622 4.582 18.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.083 5.083 3 C -0.130 4.130 4 C -0.234 4.234 5 C -0.175 4.175 6 C -0.157 4.157 7 C 0.367 3.633 8 O -0.415 6.415 9 N -0.365 5.365 10 C 0.053 3.947 11 H 0.122 0.878 12 C -0.145 4.145 13 C -0.186 4.186 14 C 0.028 3.972 15 N -0.312 5.312 16 C -0.389 4.389 17 H 0.081 0.919 18 C -0.189 4.189 19 N -0.549 5.549 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.059 3.941 25 C -0.188 4.188 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.123 0.877 29 H 0.183 0.817 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.227 0.773 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.092 14.377 4.331 17.554 hybrid contribution -0.412 0.242 0.354 0.595 sum 8.680 14.619 4.686 17.635 Atomic orbital electron populations 1.22282 0.76006 1.04873 1.04355 1.43895 1.06915 1.05040 1.52428 1.21981 0.90777 0.91456 1.08756 1.20778 0.95888 0.95024 1.11691 1.21310 0.94454 0.95393 1.06329 1.20309 0.90397 0.87965 1.16997 1.16997 0.85961 0.83326 0.77016 1.90853 1.16026 1.84634 1.49998 1.46005 1.10522 1.06623 1.73397 1.20550 1.00200 0.77013 0.96916 0.87780 1.20555 0.97977 0.96831 0.99128 1.21454 0.99987 0.96230 1.00960 1.20706 0.89571 0.94476 0.92402 1.43639 1.01440 1.44867 1.41288 1.19165 0.85408 1.41045 0.93327 0.91946 1.25130 0.98635 1.00170 0.94978 1.70015 1.29022 1.54037 1.01781 0.86319 0.84767 0.77800 0.78035 1.21413 1.21777 1.20460 1.20936 0.95661 0.87878 0.89648 1.22480 1.01050 1.00316 0.94950 0.90593 0.90014 0.87733 0.81681 0.84230 0.84048 0.77281 0.93316 0.92713 0.91967 0.93011 0.93563 0.94989 0.93740 0.90617 0.95575 0.93463 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 10.49 59.85 0.63 1.38 16 2 N -0.41 -5.33 3.16 -120.23 -0.38 -5.71 16 3 C 0.01 0.06 11.37 -16.91 -0.19 -0.13 16 4 C -0.21 -2.22 10.81 -39.98 -0.43 -2.66 16 5 C -0.15 -1.78 10.35 -39.12 -0.40 -2.19 16 6 C -0.04 -0.62 6.89 -81.98 -0.56 -1.18 16 7 C 0.58 10.09 7.59 -12.85 -0.10 9.99 16 8 O -0.54 -11.48 14.41 5.20 0.07 -11.40 16 9 N -0.72 -11.07 4.90 -56.44 -0.28 -11.35 16 10 C 0.16 2.85 2.10 -69.29 -0.15 2.71 16 11 H 0.10 2.39 6.85 -51.93 -0.36 2.04 16 12 C -0.11 -1.68 4.69 -29.86 -0.14 -1.82 16 13 C -0.15 -2.53 5.74 -28.58 -0.16 -2.69 16 14 C 0.16 3.24 5.66 -4.08 -0.02 3.22 16 15 N -0.59 -14.77 2.26 -172.09 -0.39 -15.16 16 16 C -0.26 -7.21 9.41 -15.06 -0.14 -7.35 16 17 H 0.06 1.71 7.85 -52.49 -0.41 1.30 16 18 C 0.01 0.28 4.99 -17.43 -0.09 0.19 16 19 N -0.90 -26.87 10.96 55.49 0.61 -26.26 16 20 Si 0.90 22.49 29.57 -169.99 -5.03 17.46 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.18 4.55 4.63 -2.95 -0.01 4.54 16 25 C -0.15 -2.93 5.39 -27.30 -0.15 -3.07 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.66 8.12 -51.93 -0.42 0.23 16 28 H 0.10 1.48 6.54 -51.93 -0.34 1.14 16 29 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.36 7.48 -52.49 -0.39 0.96 16 32 H 0.39 4.75 7.53 -40.82 -0.31 4.45 16 33 H 0.05 0.67 8.03 -51.93 -0.42 0.25 16 34 H 0.05 0.79 7.35 -51.93 -0.38 0.41 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.97 7.99 -51.93 -0.41 0.56 16 38 H 0.03 0.62 8.06 -51.93 -0.42 0.21 16 39 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.08 2.16 6.48 -51.93 -0.34 1.82 16 41 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 42 H 0.05 0.85 7.31 -51.93 -0.38 0.47 16 43 H 0.05 1.10 7.84 -51.93 -0.41 0.70 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -32.93 340.95 -8.82 -41.75 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.65 Total: 4.61 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.93 Total: 0.93 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.44 Total: -58.48 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.93 -8.82 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052215249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.023 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds