Wall clock time and date at job start Tue Mar 31 2020 07:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35529 * 125.67763 * 2 1 4 4 C 1.35457 * 108.87289 * 180.02562 * 3 2 1 5 5 C 1.39835 * 107.86317 * 359.74348 * 4 3 2 6 6 C 1.37657 * 125.67785 * 180.02562 * 2 1 3 7 7 C 1.46682 * 126.23082 * 359.97438 * 6 2 1 8 8 O 1.21685 * 120.00243 * 5.33562 * 7 6 2 9 9 N 1.34778 * 119.99426 * 185.32968 * 7 6 2 10 10 C 1.46501 * 119.99766 * 184.96605 * 9 7 6 11 11 H 1.09006 * 109.50562 * 324.94398 * 10 9 7 12 12 C 1.52428 * 109.29685 * 204.86380 * 10 9 7 13 13 C 1.47097 * 114.21900 * 154.94968 * 12 10 9 14 14 C 1.54861 * 110.31987 * 62.78969 * 13 12 10 15 15 N 1.44586 * 109.60262 * 288.73189 * 14 13 12 16 16 C 1.36939 * 118.64341 * 270.75226 * 15 14 13 17 17 H 1.07994 * 120.00175 * 30.60058 * 16 15 14 18 18 C 1.38812 * 119.99528 * 210.60640 * 16 15 14 19 19 N 1.31618 * 120.00337 * 10.07975 * 18 16 15 20 20 Si 1.86808 * 119.99651 * 190.07744 * 18 16 15 21 21 H 1.48496 * 109.46804 * 90.00112 * 20 18 16 22 22 H 1.48497 * 109.47062 * 209.99778 * 20 18 16 23 23 H 1.48494 * 109.47195 * 330.00225 * 20 18 16 24 24 C 1.47600 * 122.71105 * 90.72804 * 15 14 13 25 25 C 1.50876 * 109.48824 * 85.00230 * 10 9 7 26 26 H 1.08997 * 109.47099 * 264.31240 * 1 2 3 27 27 H 1.09004 * 109.47130 * 24.31843 * 1 2 3 28 28 H 1.09002 * 109.46984 * 144.31940 * 1 2 3 29 29 H 1.08000 * 125.56685 * 0.04674 * 3 2 1 30 30 H 1.07998 * 126.06763 * 179.97438 * 4 3 2 31 31 H 1.07993 * 126.45881 * 180.26118 * 5 4 3 32 32 H 0.97000 * 120.00384 * 4.97088 * 9 7 6 33 33 H 1.09000 * 108.57730 * 33.71930 * 12 10 9 34 34 H 1.09000 * 108.43612 * 276.07553 * 12 10 9 35 35 H 1.09000 * 109.32896 * 302.53071 * 13 12 10 36 36 H 1.08995 * 109.18620 * 182.96186 * 13 12 10 37 37 H 1.09001 * 109.44825 * 168.69762 * 14 13 12 38 38 H 1.08993 * 109.43002 * 48.75791 * 14 13 12 39 39 H 0.97002 * 119.99977 * 179.97438 * 19 18 16 40 40 H 1.08997 * 108.94909 * 197.18480 * 24 15 14 41 41 H 1.09000 * 108.87652 * 78.50605 * 24 15 14 42 42 H 1.09003 * 109.36623 * 91.66411 * 25 10 9 43 43 H 1.08998 * 109.37242 * 331.92208 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7093 -0.0006 5 6 3.5780 -0.6888 0.0050 6 6 2.2679 -1.1182 -0.0005 7 6 1.8124 -2.5125 -0.0006 8 8 0.6260 -2.7651 -0.0982 9 7 2.7080 -3.5139 0.1073 10 6 2.2663 -4.9065 -0.0019 11 1 1.2752 -5.0097 0.4401 12 6 3.2513 -5.8066 0.7350 13 6 2.6750 -7.0769 1.2018 14 6 2.2027 -7.9280 -0.0027 15 7 1.0242 -7.3284 -0.5878 16 6 -0.2054 -7.6959 -0.1100 17 1 -0.3179 -7.9878 0.9237 18 6 -1.3071 -7.6934 -0.9544 19 7 -1.1427 -7.5329 -2.2504 20 14 -3.0232 -7.9179 -0.2513 21 1 -3.5949 -6.5910 0.0919 22 1 -3.8876 -8.5838 -1.2585 23 1 -2.9512 -8.7571 0.9716 24 6 1.0919 -6.3363 -1.6785 25 6 2.2131 -5.3051 -1.4561 26 1 -0.3633 -0.1018 1.0226 27 1 -0.3633 0.9365 -0.4232 28 1 -0.3633 -0.8348 -0.5994 29 1 1.9082 2.1236 0.0007 30 1 4.4133 1.3612 -0.0011 31 1 4.4583 -1.3144 0.0100 32 1 3.6449 -3.3126 0.2574 33 1 3.6386 -5.2645 1.5977 34 1 4.0824 -6.0288 0.0657 35 1 1.8255 -6.8701 1.8527 36 1 3.4308 -7.6295 1.7598 37 1 1.9665 -8.9367 0.3361 38 1 2.9959 -7.9720 -0.7488 39 1 -1.9126 -7.5315 -2.8404 40 1 0.1375 -5.8135 -1.7411 41 1 1.2719 -6.8575 -2.6187 42 1 3.1687 -5.7418 -1.7464 43 1 2.0189 -4.4228 -2.0659 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052215249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:49 Heat of formation + Delta-G solvation = 14.037869 kcal Electronic energy + Delta-G solvation = -24055.553215 eV Core-core repulsion = 20715.298733 eV Total energy + Delta-G solvation = -3340.254482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.30247 -40.62939 -38.99301 -36.34989 -34.62771 -33.70903 -32.74437 -32.28342 -30.05714 -27.75725 -27.39781 -25.71812 -25.14908 -23.41409 -21.70196 -21.44953 -20.94307 -20.38277 -18.76747 -18.54510 -17.39983 -16.86773 -16.59644 -16.56481 -16.09305 -15.66169 -15.26406 -15.21756 -14.80964 -14.46245 -14.32302 -14.11251 -14.00741 -13.58723 -13.32536 -13.24407 -13.15995 -13.01684 -12.89605 -12.78726 -12.51261 -12.12412 -12.02980 -11.75499 -11.52518 -11.38978 -11.33798 -10.96220 -10.48214 -10.12143 -9.68124 -9.15417 -8.58477 -7.85464 -5.36873 0.51944 1.40021 1.43827 1.50598 1.72711 1.86485 2.39169 2.45601 2.49199 3.29414 3.68358 3.77361 3.87106 3.96905 4.09119 4.20407 4.32175 4.38753 4.46476 4.48707 4.49521 4.55647 4.69216 4.72110 4.84730 4.95028 5.01473 5.15336 5.19628 5.22521 5.25266 5.28956 5.36622 5.51327 5.58120 5.62921 5.70652 5.76892 5.86651 6.02257 6.34562 6.43223 6.62828 7.19628 7.28836 7.96247 8.35637 9.18915 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017858 B = 0.004700 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.566622 B = 5955.734081 C = 6985.844012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.424 5.424 3 C 0.020 3.980 4 C -0.218 4.218 5 C -0.132 4.132 6 C -0.092 4.092 7 C 0.574 3.426 8 O -0.593 6.593 9 N -0.700 5.700 10 C 0.166 3.834 11 H 0.050 0.950 12 C -0.103 4.103 13 C -0.132 4.132 14 C 0.148 3.852 15 N -0.604 5.604 16 C -0.263 4.263 17 H 0.063 0.937 18 C -0.048 4.048 19 N -0.936 5.936 20 Si 0.959 3.041 21 H -0.295 1.295 22 H -0.290 1.290 23 H -0.263 1.263 24 C 0.198 3.802 25 C -0.132 4.132 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.067 0.933 29 H 0.204 0.796 30 H 0.170 0.830 31 H 0.165 0.835 32 H 0.414 0.586 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.247 0.753 40 H 0.024 0.976 41 H -0.002 1.002 42 H 0.077 0.923 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.572 16.465 6.027 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.097 5.097 3 C -0.115 4.115 4 C -0.241 4.241 5 C -0.159 4.159 6 C -0.204 4.204 7 C 0.363 3.637 8 O -0.476 6.476 9 N -0.351 5.351 10 C 0.062 3.938 11 H 0.068 0.932 12 C -0.141 4.141 13 C -0.173 4.173 14 C 0.022 3.978 15 N -0.327 5.327 16 C -0.394 4.394 17 H 0.080 0.920 18 C -0.243 4.243 19 N -0.582 5.582 20 Si 0.788 3.212 21 H -0.222 1.222 22 H -0.217 1.217 23 H -0.188 1.188 24 C 0.072 3.928 25 C -0.172 4.172 26 H 0.093 0.907 27 H 0.137 0.863 28 H 0.086 0.914 29 H 0.221 0.779 30 H 0.188 0.812 31 H 0.183 0.817 32 H 0.252 0.748 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.043 0.957 41 H 0.016 0.984 42 H 0.096 0.904 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.255 16.205 5.814 21.133 hybrid contribution -1.303 -0.241 -0.081 1.327 sum 10.953 15.964 5.733 20.191 Atomic orbital electron populations 1.22256 0.75967 1.05280 1.03891 1.44122 1.07313 1.05419 1.52843 1.22754 0.90712 0.92296 1.05779 1.21217 0.96962 0.94653 1.11282 1.21721 0.93865 0.96630 1.03669 1.20106 0.91911 0.86919 1.21492 1.17546 0.85344 0.84950 0.75821 1.90829 1.18424 1.85617 1.52688 1.45712 1.11401 1.05172 1.72830 1.20180 0.98851 0.79252 0.95524 0.93165 1.20512 0.97491 0.95569 1.00552 1.21298 1.00114 0.96866 0.98994 1.20961 0.88331 0.94613 0.93918 1.43807 1.02120 1.45455 1.41275 1.19473 0.86940 1.39655 0.93312 0.91972 1.25856 1.02112 1.00981 0.95342 1.70181 1.29378 1.55786 1.02852 0.85381 0.80626 0.77321 0.77864 1.22250 1.21675 1.18784 1.20559 0.95117 0.88300 0.88786 1.22261 1.00132 0.98428 0.96341 0.90726 0.86268 0.91399 0.77926 0.81221 0.81724 0.74812 0.90276 0.89903 0.94591 0.89053 0.94268 0.93268 0.94432 0.95713 0.98410 0.90444 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.56 10.49 127.77 1.34 2.90 16 2 N -0.42 -10.54 3.16 -534.29 -1.69 -12.23 16 3 C 0.02 0.35 11.37 83.48 0.95 1.30 16 4 C -0.22 -3.74 10.81 22.01 0.24 -3.51 16 5 C -0.13 -2.78 10.35 22.57 0.23 -2.55 16 6 C -0.09 -2.61 6.89 40.35 0.28 -2.33 16 7 C 0.57 20.51 7.59 86.45 0.66 21.16 16 8 O -0.59 -27.33 14.41 -4.30 -0.06 -27.39 16 9 N -0.70 -21.15 4.90 -450.71 -2.21 -23.36 16 10 C 0.17 6.06 2.10 44.11 0.09 6.15 16 11 H 0.05 2.42 6.85 -2.38 -0.02 2.41 16 12 C -0.10 -2.93 4.69 28.57 0.13 -2.80 16 13 C -0.13 -4.30 5.74 29.39 0.17 -4.13 16 14 C 0.15 6.01 5.66 87.37 0.49 6.50 16 15 N -0.60 -31.19 2.26 -698.38 -1.58 -32.76 16 16 C -0.26 -15.19 9.41 84.03 0.79 -14.39 16 17 H 0.06 3.52 7.85 -2.91 -0.02 3.49 16 18 C -0.05 -2.83 4.99 84.86 0.42 -2.41 16 19 N -0.94 -58.73 10.96 21.65 0.24 -58.49 16 20 Si 0.96 48.12 29.57 68.60 2.03 50.15 16 21 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 22 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 23 H -0.26 -12.39 7.11 99.48 0.71 -11.69 16 24 C 0.20 10.34 4.63 86.49 0.40 10.74 16 25 C -0.13 -5.28 5.39 30.22 0.16 -5.11 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.12 1.74 8.12 -2.39 -0.02 1.72 16 28 H 0.07 2.09 6.54 -2.39 -0.02 2.08 16 29 H 0.20 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.17 2.50 7.48 -2.91 -0.02 2.48 16 32 H 0.41 8.88 7.53 -92.71 -0.70 8.18 16 33 H 0.08 1.83 8.03 -2.39 -0.02 1.81 16 34 H 0.08 1.97 7.35 -2.39 -0.02 1.95 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.04 1.62 7.99 -2.39 -0.02 1.60 16 38 H 0.05 1.82 8.06 -2.39 -0.02 1.80 16 39 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 40 H 0.02 1.51 6.48 -2.39 -0.02 1.50 16 41 H 0.00 -0.12 7.99 -2.39 -0.02 -0.14 16 42 H 0.08 2.64 7.31 -2.39 -0.02 2.62 16 43 H 0.04 1.88 7.84 -2.39 -0.02 1.86 16 Total: -1.00 -79.06 340.95 3.40 -75.67 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.30 Total: 16.90 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 6.36 Total: 11.53 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -5.24 Total: -126.85 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.06 Total: -27.39 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Total: -79.06 3.40 -75.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052215249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.703 kcal (2) G-P(sol) polarization free energy of solvation -79.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds