Wall clock time and date at job start Tue Mar 31 2020 07:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35528 * 125.67743 * 2 1 4 4 C 1.35457 * 108.87282 * 180.30418 * 3 2 1 5 5 C 1.39838 * 107.86037 * 359.72464 * 4 3 2 6 6 C 1.37650 * 125.67555 * 179.83902 * 2 1 3 7 7 C 1.46679 * 126.23741 * 359.96614 * 6 2 1 8 8 O 1.21694 * 119.99716 * 3.82636 * 7 6 2 9 9 N 1.34777 * 120.00226 * 183.82895 * 7 6 2 10 10 C 1.46498 * 120.00218 * 174.94157 * 9 7 6 11 11 H 1.09001 * 109.20283 * 35.63926 * 10 9 7 12 12 C 1.50124 * 109.21021 * 154.99791 * 10 9 7 13 13 C 1.52530 * 105.41244 * 218.02717 * 12 10 9 14 14 C 1.46236 * 114.27772 * 270.59189 * 13 12 10 15 15 N 1.50171 * 107.52930 * 58.41101 * 14 13 12 16 16 C 1.36940 * 120.53406 * 109.56834 * 15 14 13 17 17 H 1.08000 * 119.99868 * 156.06935 * 16 15 14 18 18 C 1.38809 * 120.00268 * 335.79103 * 16 15 14 19 19 N 1.31623 * 119.99416 * 330.72669 * 18 16 15 20 20 Si 1.86795 * 120.00113 * 150.72572 * 18 16 15 21 21 H 1.48497 * 109.46952 * 94.98619 * 20 18 16 22 22 H 1.48505 * 109.47096 * 214.98263 * 20 18 16 23 23 H 1.48494 * 109.47226 * 334.98563 * 20 18 16 24 24 C 1.43434 * 118.92581 * 289.83658 * 15 14 13 25 25 C 1.54412 * 116.38717 * 91.46092 * 24 15 14 26 26 H 1.09001 * 109.47733 * 264.52840 * 1 2 3 27 27 H 1.08999 * 109.47261 * 24.53442 * 1 2 3 28 28 H 1.09004 * 109.47014 * 144.52907 * 1 2 3 29 29 H 1.08003 * 125.56616 * 359.97438 * 3 2 1 30 30 H 1.07999 * 126.06995 * 179.76400 * 4 3 2 31 31 H 1.08000 * 126.45729 * 180.02562 * 5 4 3 32 32 H 0.96998 * 119.99757 * 354.93430 * 9 7 6 33 33 H 1.08996 * 110.24591 * 99.05764 * 12 10 9 34 34 H 1.09002 * 110.24802 * 337.00036 * 12 10 9 35 35 H 1.08999 * 108.52126 * 149.35199 * 13 12 10 36 36 H 1.09002 * 108.40314 * 31.74934 * 13 12 10 37 37 H 1.08999 * 109.84806 * 298.90457 * 14 13 12 38 38 H 1.09002 * 109.84158 * 177.91529 * 14 13 12 39 39 H 0.97002 * 119.99315 * 179.97438 * 19 18 16 40 40 H 1.09003 * 108.15787 * 213.03333 * 24 15 14 41 41 H 1.08992 * 108.16237 * 329.60165 * 24 15 14 42 42 H 1.08997 * 109.44108 * 198.43976 * 25 24 15 43 43 H 1.08997 * 109.34687 * 78.80234 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5521 0.7093 -0.0068 5 6 3.5779 -0.6888 -0.0048 6 6 2.2678 -1.1182 0.0031 7 6 1.8124 -2.5125 0.0078 8 8 0.6238 -2.7646 -0.0612 9 7 2.7102 -3.5144 0.0884 10 6 2.2520 -4.9010 0.2048 11 1 1.3436 -5.0290 -0.3839 12 6 3.3162 -5.8189 -0.3232 13 6 2.5679 -6.9294 -1.0534 14 6 2.2103 -8.0691 -0.2097 15 7 1.3593 -7.5507 0.9137 16 6 0.0228 -7.8443 0.9668 17 1 -0.4980 -7.8212 1.9127 18 6 -0.6639 -8.1659 -0.1959 19 7 -0.2742 -7.6666 -1.3497 20 14 -2.1409 -9.3071 -0.1230 21 1 -3.3850 -8.5013 -0.0324 22 1 -2.1812 -10.1436 -1.3494 23 1 -2.0308 -10.1836 1.0706 24 6 1.9678 -6.7382 1.9271 25 6 1.9437 -5.2126 1.6899 26 1 -0.3634 -0.0980 1.0230 27 1 -0.3634 0.9349 -0.4267 28 1 -0.3633 -0.8370 -0.5964 29 1 1.9081 2.1236 -0.0004 30 1 4.4132 1.3611 -0.0121 31 1 4.4582 -1.3145 -0.0085 32 1 3.6598 -3.3174 0.0693 33 1 3.8984 -6.2340 0.4994 34 1 3.9665 -5.2838 -1.0153 35 1 3.1921 -7.2872 -1.8722 36 1 1.6541 -6.5097 -1.4741 37 1 3.1128 -8.5298 0.1919 38 1 1.6489 -8.7992 -0.7927 39 1 -0.7538 -7.8916 -2.1623 40 1 1.4621 -6.9382 2.8719 41 1 3.0074 -7.0482 2.0323 42 1 2.6923 -4.7352 2.3221 43 1 0.9578 -4.8233 1.9436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052215252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:54 Heat of formation + Delta-G solvation = 43.235002 kcal Electronic energy + Delta-G solvation = -24099.588446 eV Core-core repulsion = 20760.600047 eV Total energy + Delta-G solvation = -3338.988399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.29710 -39.13686 -37.45787 -34.62973 -32.97841 -32.13391 -31.54924 -30.32836 -28.77461 -26.48183 -26.08232 -24.10757 -23.36202 -21.88489 -20.51088 -20.23042 -19.19978 -18.99615 -17.66265 -16.64179 -15.61400 -15.58471 -15.34237 -14.92742 -14.38806 -14.18833 -13.80001 -13.61135 -13.39142 -13.19472 -13.17129 -12.50917 -12.35478 -12.27402 -12.21160 -11.98927 -11.80553 -11.46470 -11.32110 -10.70721 -10.58599 -10.36680 -10.21223 -10.02930 -9.74086 -9.50593 -9.45626 -9.29981 -8.76114 -8.57648 -8.31963 -8.13116 -6.70792 -5.78219 -3.09406 1.61272 2.72899 2.75186 3.42248 3.50955 3.54784 3.65674 3.72452 4.57694 4.79360 4.93033 5.00401 5.25757 5.34827 5.36521 5.39267 5.40491 5.59563 5.66299 5.76381 5.90945 6.01979 6.05225 6.15714 6.29641 6.35169 6.42437 6.51894 6.69069 6.75439 6.89246 6.94891 6.96560 6.98534 7.05932 7.16844 7.19797 7.24281 7.47632 7.78683 7.94845 8.00737 8.45904 8.61719 9.21314 9.91551 10.45679 11.29090 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.004281 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.024727 B = 6539.045303 C = 7207.429034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.411 5.411 3 C 0.004 3.996 4 C -0.210 4.210 5 C -0.150 4.150 6 C -0.041 4.041 7 C 0.579 3.421 8 O -0.540 6.540 9 N -0.715 5.715 10 C 0.156 3.844 11 H 0.107 0.893 12 C -0.119 4.119 13 C -0.138 4.138 14 C 0.168 3.832 15 N -0.585 5.585 16 C -0.259 4.259 17 H 0.067 0.933 18 C 0.011 3.989 19 N -0.885 5.885 20 Si 0.888 3.112 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.162 3.838 25 C -0.151 4.151 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.165 0.835 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.393 0.607 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.030 0.970 36 H 0.108 0.892 37 H 0.011 0.989 38 H 0.076 0.924 39 H 0.252 0.748 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.045 0.955 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.936 14.201 1.592 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.083 5.083 3 C -0.131 4.131 4 C -0.234 4.234 5 C -0.176 4.176 6 C -0.155 4.155 7 C 0.365 3.635 8 O -0.419 6.419 9 N -0.365 5.365 10 C 0.053 3.947 11 H 0.125 0.875 12 C -0.157 4.157 13 C -0.177 4.177 14 C 0.044 3.956 15 N -0.307 5.307 16 C -0.388 4.388 17 H 0.084 0.916 18 C -0.188 4.188 19 N -0.528 5.528 20 Si 0.717 3.283 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.032 3.968 25 C -0.193 4.193 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.183 0.817 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.226 0.774 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.126 0.874 37 H 0.030 0.970 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.575 13.903 1.392 15.894 hybrid contribution -0.358 -0.088 -0.096 0.381 sum 7.217 13.815 1.296 15.640 Atomic orbital electron populations 1.22261 0.76068 1.04728 1.04345 1.43890 1.06893 1.05065 1.52491 1.21968 0.90783 0.91434 1.08935 1.20773 0.95872 0.95026 1.11702 1.21312 0.94484 0.95379 1.06438 1.20369 0.90381 0.88065 1.16703 1.17038 0.86134 0.83348 0.76970 1.90837 1.16097 1.84668 1.50265 1.46191 1.08841 1.07385 1.74085 1.21333 0.99023 0.76518 0.97784 0.87503 1.21330 0.97006 0.97663 0.99725 1.20990 1.01284 0.97329 0.98060 1.20052 0.91627 0.94955 0.88947 1.44318 1.05846 1.53817 1.26688 1.19098 0.85223 1.41854 0.92669 0.91565 1.24800 0.97339 1.00736 0.95963 1.70074 1.42196 1.42024 0.98523 0.86514 0.83008 0.81726 0.77021 1.21665 1.21655 1.20515 1.20257 0.95637 0.88118 0.92788 1.23231 1.00399 1.00902 0.94754 0.90593 0.90081 0.87838 0.81722 0.84257 0.84062 0.77365 0.91803 0.92682 0.95108 0.87391 0.97046 0.90530 0.93803 0.94855 0.95315 0.93627 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 10.47 59.85 0.63 1.41 16 2 N -0.41 -5.50 3.16 -120.23 -0.38 -5.88 16 3 C 0.00 0.04 11.37 -16.91 -0.19 -0.15 16 4 C -0.21 -2.30 10.81 -39.98 -0.43 -2.73 16 5 C -0.15 -1.87 10.36 -39.12 -0.41 -2.28 16 6 C -0.04 -0.62 6.89 -81.98 -0.56 -1.18 16 7 C 0.58 10.49 7.73 -12.85 -0.10 10.39 16 8 O -0.54 -11.93 14.41 5.19 0.07 -11.85 16 9 N -0.72 -11.76 4.96 -55.56 -0.28 -12.04 16 10 C 0.16 3.04 2.26 -68.39 -0.15 2.89 16 11 H 0.11 2.68 6.19 -51.93 -0.32 2.36 16 12 C -0.12 -2.10 5.34 -28.40 -0.15 -2.25 16 13 C -0.14 -2.89 5.08 -30.19 -0.15 -3.04 16 14 C 0.17 3.82 5.26 -5.20 -0.03 3.79 16 15 N -0.59 -14.32 2.60 -175.40 -0.46 -14.77 16 16 C -0.26 -7.11 9.53 -15.06 -0.14 -7.25 16 17 H 0.07 1.83 7.97 -52.49 -0.42 1.41 16 18 C 0.01 0.31 4.61 -17.43 -0.08 0.23 16 19 N -0.89 -24.89 10.10 55.49 0.56 -24.33 16 20 Si 0.89 21.73 29.64 -169.99 -5.04 16.69 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.16 3.41 5.13 -4.92 -0.03 3.38 16 25 C -0.15 -2.99 5.97 -25.02 -0.15 -3.14 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 28 H 0.10 1.48 6.57 -51.93 -0.34 1.14 16 29 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.14 1.43 7.45 -52.49 -0.39 1.04 16 32 H 0.39 5.12 7.37 -40.82 -0.30 4.82 16 33 H 0.06 1.07 6.28 -51.93 -0.33 0.74 16 34 H 0.05 0.85 7.85 -51.93 -0.41 0.44 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.11 2.70 5.10 -51.93 -0.26 2.44 16 37 H 0.01 0.24 8.13 -51.93 -0.42 -0.19 16 38 H 0.08 1.93 6.45 -51.93 -0.34 1.60 16 39 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.03 0.71 7.99 -51.93 -0.42 0.29 16 41 H 0.03 0.55 6.89 -51.93 -0.36 0.19 16 42 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 43 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -31.72 336.33 -8.79 -40.51 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.39 Total: 6.55 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.95 Total: 0.05 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.55 Total: -57.02 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.07 Total: -11.85 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.04 Total: 16.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.72 -8.79 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052215252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.747 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds