Wall clock time and date at job start Tue Mar 31 2020 07:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35528 * 125.67743 * 2 1 4 4 C 1.35457 * 108.87282 * 180.30418 * 3 2 1 5 5 C 1.39838 * 107.86037 * 359.72464 * 4 3 2 6 6 C 1.37650 * 125.67555 * 179.83902 * 2 1 3 7 7 C 1.46679 * 126.23741 * 359.96614 * 6 2 1 8 8 O 1.21694 * 119.99716 * 3.82636 * 7 6 2 9 9 N 1.34777 * 120.00226 * 183.82895 * 7 6 2 10 10 C 1.46498 * 120.00218 * 174.94157 * 9 7 6 11 11 H 1.09001 * 109.20283 * 35.63926 * 10 9 7 12 12 C 1.50124 * 109.21021 * 154.99791 * 10 9 7 13 13 C 1.52530 * 105.41244 * 218.02717 * 12 10 9 14 14 C 1.46236 * 114.27772 * 270.59189 * 13 12 10 15 15 N 1.50171 * 107.52930 * 58.41101 * 14 13 12 16 16 C 1.36940 * 120.53406 * 109.56834 * 15 14 13 17 17 H 1.08000 * 119.99868 * 156.06935 * 16 15 14 18 18 C 1.38809 * 120.00268 * 335.79103 * 16 15 14 19 19 N 1.31623 * 119.99416 * 330.72669 * 18 16 15 20 20 Si 1.86795 * 120.00113 * 150.72572 * 18 16 15 21 21 H 1.48497 * 109.46952 * 94.98619 * 20 18 16 22 22 H 1.48505 * 109.47096 * 214.98263 * 20 18 16 23 23 H 1.48494 * 109.47226 * 334.98563 * 20 18 16 24 24 C 1.43434 * 118.92581 * 289.83658 * 15 14 13 25 25 C 1.54412 * 116.38717 * 91.46092 * 24 15 14 26 26 H 1.09001 * 109.47733 * 264.52840 * 1 2 3 27 27 H 1.08999 * 109.47261 * 24.53442 * 1 2 3 28 28 H 1.09004 * 109.47014 * 144.52907 * 1 2 3 29 29 H 1.08003 * 125.56616 * 359.97438 * 3 2 1 30 30 H 1.07999 * 126.06995 * 179.76400 * 4 3 2 31 31 H 1.08000 * 126.45729 * 180.02562 * 5 4 3 32 32 H 0.96998 * 119.99757 * 354.93430 * 9 7 6 33 33 H 1.08996 * 110.24591 * 99.05764 * 12 10 9 34 34 H 1.09002 * 110.24802 * 337.00036 * 12 10 9 35 35 H 1.08999 * 108.52126 * 149.35199 * 13 12 10 36 36 H 1.09002 * 108.40314 * 31.74934 * 13 12 10 37 37 H 1.08999 * 109.84806 * 298.90457 * 14 13 12 38 38 H 1.09002 * 109.84158 * 177.91529 * 14 13 12 39 39 H 0.97002 * 119.99315 * 179.97438 * 19 18 16 40 40 H 1.09003 * 108.15787 * 213.03333 * 24 15 14 41 41 H 1.08992 * 108.16237 * 329.60165 * 24 15 14 42 42 H 1.08997 * 109.44108 * 198.43976 * 25 24 15 43 43 H 1.08997 * 109.34687 * 78.80234 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5521 0.7093 -0.0068 5 6 3.5779 -0.6888 -0.0048 6 6 2.2678 -1.1182 0.0031 7 6 1.8124 -2.5125 0.0078 8 8 0.6238 -2.7646 -0.0612 9 7 2.7102 -3.5144 0.0884 10 6 2.2520 -4.9010 0.2048 11 1 1.3436 -5.0290 -0.3839 12 6 3.3162 -5.8189 -0.3232 13 6 2.5679 -6.9294 -1.0534 14 6 2.2103 -8.0691 -0.2097 15 7 1.3593 -7.5507 0.9137 16 6 0.0228 -7.8443 0.9668 17 1 -0.4980 -7.8212 1.9127 18 6 -0.6639 -8.1659 -0.1959 19 7 -0.2742 -7.6666 -1.3497 20 14 -2.1409 -9.3071 -0.1230 21 1 -3.3850 -8.5013 -0.0324 22 1 -2.1812 -10.1436 -1.3494 23 1 -2.0308 -10.1836 1.0706 24 6 1.9678 -6.7382 1.9271 25 6 1.9437 -5.2126 1.6899 26 1 -0.3634 -0.0980 1.0230 27 1 -0.3634 0.9349 -0.4267 28 1 -0.3633 -0.8370 -0.5964 29 1 1.9081 2.1236 -0.0004 30 1 4.4132 1.3611 -0.0121 31 1 4.4582 -1.3145 -0.0085 32 1 3.6598 -3.3174 0.0693 33 1 3.8984 -6.2340 0.4994 34 1 3.9665 -5.2838 -1.0153 35 1 3.1921 -7.2872 -1.8722 36 1 1.6541 -6.5097 -1.4741 37 1 3.1128 -8.5298 0.1919 38 1 1.6489 -8.7992 -0.7927 39 1 -0.7538 -7.8916 -2.1623 40 1 1.4621 -6.9382 2.8719 41 1 3.0074 -7.0482 2.0323 42 1 2.6923 -4.7352 2.3221 43 1 0.9578 -4.8233 1.9436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052215252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:53 Heat of formation + Delta-G solvation = 23.050384 kcal Electronic energy + Delta-G solvation = -24100.463716 eV Core-core repulsion = 20760.600047 eV Total energy + Delta-G solvation = -3339.863670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.29216 -40.58864 -39.07750 -36.27650 -34.29272 -33.56292 -33.32696 -31.95926 -29.96363 -27.88040 -27.39775 -25.79356 -25.03235 -23.27147 -21.89836 -21.44758 -20.75027 -20.34003 -18.76654 -18.56759 -17.07034 -16.94128 -16.61360 -16.54844 -16.02726 -15.67804 -15.43976 -15.06536 -14.92799 -14.42206 -14.14238 -14.06922 -13.93181 -13.49698 -13.36043 -13.28179 -13.19012 -13.10129 -12.89712 -12.66636 -12.38754 -12.13531 -11.95280 -11.75986 -11.58516 -11.18897 -11.09076 -10.92839 -10.44430 -9.99163 -9.68077 -9.14621 -8.68216 -7.86701 -5.20218 0.52650 1.43153 1.46934 1.56751 1.74724 1.87159 2.42158 2.48185 2.54656 3.23373 3.61478 3.81093 3.96593 4.03445 4.14724 4.20545 4.32250 4.33146 4.47543 4.51025 4.55809 4.63306 4.71184 4.74960 4.87408 4.88800 5.05326 5.18124 5.19214 5.26426 5.27438 5.32002 5.40847 5.48930 5.64898 5.70117 5.73327 5.87831 6.02089 6.16390 6.35288 6.40792 6.65692 7.17332 7.31243 7.92541 8.42185 9.16676 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.004281 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.024727 B = 6539.045303 C = 7207.429034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.424 5.424 3 C 0.020 3.980 4 C -0.218 4.218 5 C -0.133 4.133 6 C -0.091 4.091 7 C 0.572 3.428 8 O -0.596 6.596 9 N -0.702 5.702 10 C 0.170 3.830 11 H 0.043 0.957 12 C -0.104 4.104 13 C -0.133 4.133 14 C 0.170 3.830 15 N -0.599 5.599 16 C -0.273 4.273 17 H 0.055 0.945 18 C -0.034 4.034 19 N -0.904 5.904 20 Si 0.945 3.055 21 H -0.295 1.295 22 H -0.289 1.289 23 H -0.272 1.272 24 C 0.156 3.844 25 C -0.140 4.140 26 H 0.072 0.928 27 H 0.120 0.880 28 H 0.067 0.933 29 H 0.205 0.795 30 H 0.171 0.829 31 H 0.165 0.835 32 H 0.413 0.587 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.043 0.957 39 H 0.246 0.754 40 H 0.026 0.974 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.931 16.117 2.181 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.097 5.097 3 C -0.115 4.115 4 C -0.241 4.241 5 C -0.160 4.160 6 C -0.204 4.204 7 C 0.361 3.639 8 O -0.479 6.479 9 N -0.353 5.353 10 C 0.066 3.934 11 H 0.061 0.939 12 C -0.142 4.142 13 C -0.172 4.172 14 C 0.047 3.953 15 N -0.321 5.321 16 C -0.403 4.403 17 H 0.073 0.927 18 C -0.231 4.231 19 N -0.548 5.548 20 Si 0.774 3.226 21 H -0.223 1.223 22 H -0.215 1.215 23 H -0.197 1.197 24 C 0.028 3.972 25 C -0.182 4.182 26 H 0.091 0.909 27 H 0.139 0.861 28 H 0.086 0.914 29 H 0.222 0.778 30 H 0.188 0.812 31 H 0.182 0.818 32 H 0.251 0.749 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 10.631 15.817 1.997 19.162 hybrid contribution -1.257 -0.555 -0.259 1.398 sum 9.374 15.262 1.738 17.995 Atomic orbital electron populations 1.22245 0.75955 1.05269 1.03828 1.44123 1.07337 1.05401 1.52860 1.22759 0.90686 0.92293 1.05788 1.21217 0.97002 0.94581 1.11286 1.21722 0.93852 0.96688 1.03745 1.20116 0.91940 0.86923 1.21406 1.17600 0.85476 0.85028 0.75752 1.90811 1.18491 1.85678 1.52922 1.45911 1.09771 1.05970 1.73650 1.20857 0.97471 0.78735 0.96381 0.93860 1.21248 0.96302 0.96029 1.00642 1.20816 1.00128 0.97610 0.98625 1.20053 0.91753 0.94989 0.88530 1.44497 1.05127 1.54819 1.27693 1.19270 0.86928 1.41869 0.92224 0.92710 1.25430 0.99873 1.01940 0.95874 1.70243 1.43222 1.42722 0.98644 0.85624 0.80004 0.79927 0.77048 1.22303 1.21507 1.19749 1.20395 0.97064 0.88362 0.91428 1.23100 0.99158 1.00155 0.95746 0.90899 0.86127 0.91423 0.77829 0.81167 0.81799 0.74938 0.89459 0.89607 0.93275 0.91908 0.93978 0.93881 0.94454 0.95595 0.91917 0.90190 0.96787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.61 10.47 127.77 1.34 2.95 16 2 N -0.42 -10.84 3.16 -534.31 -1.69 -12.53 16 3 C 0.02 0.36 11.37 83.48 0.95 1.31 16 4 C -0.22 -3.88 10.81 22.01 0.24 -3.64 16 5 C -0.13 -2.94 10.36 22.57 0.23 -2.71 16 6 C -0.09 -2.70 6.89 40.35 0.28 -2.42 16 7 C 0.57 21.44 7.73 86.45 0.67 22.11 16 8 O -0.60 -28.49 14.41 -4.33 -0.06 -28.55 16 9 N -0.70 -22.84 4.96 -447.92 -2.22 -25.06 16 10 C 0.17 6.69 2.26 44.69 0.10 6.79 16 11 H 0.04 2.32 6.19 -2.39 -0.01 2.30 16 12 C -0.10 -3.47 5.34 29.51 0.16 -3.31 16 13 C -0.13 -5.55 5.08 28.36 0.14 -5.41 16 14 C 0.17 7.72 5.26 83.58 0.44 8.16 16 15 N -0.60 -29.79 2.60 -708.84 -1.84 -31.63 16 16 C -0.27 -15.50 9.53 84.03 0.80 -14.70 16 17 H 0.06 3.16 7.97 -2.91 -0.02 3.14 16 18 C -0.03 -1.92 4.61 84.86 0.39 -1.53 16 19 N -0.90 -53.40 10.10 21.65 0.22 -53.18 16 20 Si 0.95 46.30 29.64 68.60 2.03 48.33 16 21 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 24 C 0.16 6.50 5.13 87.43 0.45 6.95 16 25 C -0.14 -5.57 5.97 31.70 0.19 -5.39 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.12 1.77 8.12 -2.39 -0.02 1.75 16 28 H 0.07 2.10 6.57 -2.38 -0.02 2.09 16 29 H 0.20 1.91 8.06 -2.91 -0.02 1.88 16 30 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.16 2.67 7.45 -2.91 -0.02 2.65 16 32 H 0.41 9.78 7.37 -92.71 -0.68 9.10 16 33 H 0.09 2.55 6.28 -2.39 -0.02 2.53 16 34 H 0.09 2.34 7.85 -2.39 -0.02 2.32 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 3.28 5.10 -2.39 -0.01 3.27 16 37 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 38 H 0.04 2.22 6.45 -2.39 -0.02 2.21 16 39 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 40 H 0.03 1.10 7.99 -2.39 -0.02 1.08 16 41 H 0.06 2.19 6.89 -2.39 -0.02 2.18 16 42 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 43 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -75.76 336.33 3.14 -72.62 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.33 Total: 20.84 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 6.38 Total: 9.16 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -5.54 Total: -122.40 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.06 Total: -28.55 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -75.76 3.14 -72.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052215252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.668 kcal (2) G-P(sol) polarization free energy of solvation -75.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds