Wall clock time and date at job start Tue Mar 31 2020 07:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36443 * 124.84628 * 2 1 4 4 C 1.34494 * 108.85260 * 179.97438 * 3 2 1 5 5 C 1.46682 * 106.33158 * 0.02562 * 4 3 2 6 6 C 1.47267 * 126.93974 * 179.97438 * 5 4 3 7 7 O 1.21626 * 119.99776 * 180.02562 * 6 5 4 8 8 N 1.34775 * 120.00153 * 0.02562 * 6 5 4 9 9 C 1.46502 * 119.99961 * 180.02562 * 8 6 5 10 10 H 1.08992 * 109.50571 * 325.05278 * 9 8 6 11 11 C 1.52576 * 109.48705 * 205.00009 * 9 8 6 12 12 C 1.47090 * 114.32498 * 155.02300 * 11 9 8 13 13 C 1.54860 * 110.32374 * 62.79675 * 12 11 9 14 14 N 1.44575 * 109.60592 * 288.73620 * 13 12 11 15 15 C 1.36935 * 118.64242 * 270.70972 * 14 13 12 16 16 H 1.08002 * 120.00415 * 27.23781 * 15 14 13 17 17 C 1.38815 * 120.00137 * 206.96980 * 15 14 13 18 18 N 1.31620 * 119.99298 * 17.02045 * 17 15 14 19 19 Si 1.86791 * 120.00118 * 197.02174 * 17 15 14 20 20 H 1.48500 * 109.47253 * 90.00232 * 19 17 15 21 21 H 1.48502 * 109.47293 * 209.99654 * 19 17 15 22 22 H 1.48498 * 109.47439 * 329.99788 * 19 17 15 23 23 C 1.47605 * 122.71592 * 90.97965 * 14 13 12 24 24 C 1.50877 * 109.49263 * 85.11581 * 9 8 6 25 25 C 1.34660 * 124.85078 * 180.26243 * 2 1 3 26 26 H 1.09002 * 109.47244 * 90.02577 * 1 2 3 27 27 H 1.09001 * 109.47019 * 210.01984 * 1 2 3 28 28 H 1.09001 * 109.47507 * 330.02318 * 1 2 3 29 29 H 1.07998 * 125.57651 * 0.02562 * 3 2 1 30 30 H 1.08004 * 126.83136 * 180.02562 * 4 3 2 31 31 H 0.96997 * 120.00026 * 0.02562 * 8 6 5 32 32 H 1.09002 * 108.51087 * 33.76428 * 11 9 8 33 33 H 1.09001 * 108.38461 * 276.18839 * 11 9 8 34 34 H 1.08998 * 109.32303 * 302.53792 * 12 11 9 35 35 H 1.08998 * 109.18452 * 182.97207 * 12 11 9 36 36 H 1.08998 * 109.45004 * 168.69132 * 13 12 11 37 37 H 1.09004 * 109.44913 * 48.77621 * 13 12 11 38 38 H 0.97003 * 119.99220 * 179.97438 * 18 17 15 39 39 H 1.08996 * 108.94504 * 78.30134 * 23 14 13 40 40 H 1.08998 * 108.95095 * 196.93066 * 23 14 13 41 41 H 1.09008 * 109.36313 * 332.04027 * 24 9 8 42 42 H 1.08996 * 109.36870 * 91.65611 * 24 9 8 43 43 H 1.07998 * 125.80077 * 0.06893 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2446 1.1198 0.0000 4 6 3.5375 0.7492 0.0006 5 6 3.5461 -0.7176 0.0003 6 6 4.7284 -1.5957 0.0002 7 8 4.5885 -2.8039 -0.0005 8 7 5.9653 -1.0605 0.0009 9 6 7.1414 -1.9340 0.0002 10 1 6.9314 -2.8276 0.5878 11 6 8.3272 -1.1916 0.6090 12 6 9.3559 -2.0670 1.1913 13 6 9.9853 -2.9608 0.0945 14 7 9.0281 -3.9593 -0.3261 15 6 8.9933 -5.1562 0.3382 16 1 9.3081 -5.2106 1.3699 17 6 8.5483 -6.2987 -0.3127 18 7 8.4793 -6.3225 -1.6269 19 14 8.0475 -7.8020 0.6764 20 1 6.6001 -7.7227 0.9988 21 1 8.3109 -9.0281 -0.1189 22 1 8.8332 -7.8504 1.9356 23 6 8.0905 -3.7441 -1.4457 24 6 7.4736 -2.3301 -1.4172 25 6 2.2345 -1.1051 -0.0051 26 1 -0.3634 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5141 28 1 -0.3634 0.8902 0.5135 29 1 1.8827 2.1373 0.0004 30 1 4.3980 1.4018 0.0011 31 1 6.0769 -0.0970 0.0018 32 1 7.9560 -0.5271 1.3892 33 1 8.7894 -0.5848 -0.1697 34 1 8.9019 -2.6986 1.9548 35 1 10.1331 -1.4529 1.6463 36 1 10.8724 -3.4534 0.4925 37 1 10.2655 -2.3442 -0.7597 38 1 8.1687 -7.1210 -2.0817 39 1 8.6244 -3.8822 -2.3858 40 1 7.2899 -4.4811 -1.3836 41 1 6.5639 -2.3205 -2.0178 42 1 8.1868 -1.6188 -1.8336 43 1 1.8767 -2.1240 -0.0108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052306442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:58 Heat of formation + Delta-G solvation = 36.901547 kcal Electronic energy + Delta-G solvation = -23697.324578 eV Core-core repulsion = 20358.061539 eV Total energy + Delta-G solvation = -3339.263038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24935 -39.15496 -37.30829 -34.44793 -33.04772 -32.56191 -30.78136 -30.25206 -29.17043 -26.92815 -25.75948 -23.98597 -23.17906 -22.08878 -20.31907 -19.97211 -19.29076 -19.05151 -17.80291 -16.46864 -15.68551 -15.56900 -15.52792 -14.91637 -14.34027 -14.19674 -13.98365 -13.65195 -13.29455 -13.19594 -13.03861 -12.74981 -12.64001 -12.46648 -12.30068 -12.04553 -11.78391 -11.41744 -10.97429 -10.72473 -10.66718 -10.27525 -10.07881 -9.93078 -9.81107 -9.57555 -9.43987 -9.32645 -8.72796 -8.52104 -8.31467 -8.19702 -6.50931 -5.62676 -3.06009 1.89804 2.36574 2.68291 3.51182 3.57611 3.58988 3.81423 3.94131 4.45815 4.65471 4.76527 4.80096 4.93144 5.05198 5.27292 5.36565 5.42013 5.44169 5.61213 5.69464 5.83215 5.89427 6.03480 6.15911 6.26184 6.34191 6.47881 6.57327 6.62539 6.67934 6.76377 6.85549 6.92555 6.95368 6.97952 7.10511 7.16204 7.28031 7.60379 7.87071 7.99277 8.10583 8.63668 8.84898 9.39716 10.07329 10.52121 11.44822 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.004217 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.344479 B = 6637.858968 C = 7618.335141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.451 5.451 3 C -0.022 4.022 4 C -0.170 4.170 5 C -0.225 4.225 6 C 0.582 3.418 7 O -0.541 6.541 8 N -0.724 5.724 9 C 0.155 3.845 10 H 0.101 0.899 11 C -0.106 4.106 12 C -0.145 4.145 13 C 0.157 3.843 14 N -0.591 5.591 15 C -0.259 4.259 16 H 0.064 0.936 17 C 0.008 3.992 18 N -0.902 5.902 19 Si 0.898 3.102 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.280 1.280 23 C 0.183 3.817 24 C -0.146 4.146 25 C 0.069 3.931 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.164 0.836 30 H 0.144 0.856 31 H 0.390 0.610 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.031 0.969 38 H 0.252 0.748 39 H 0.025 0.975 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 18.085 2.731 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.127 5.127 3 C -0.149 4.149 4 C -0.194 4.194 5 C -0.235 4.235 6 C 0.370 3.630 7 O -0.419 6.419 8 N -0.373 5.373 9 C 0.052 3.948 10 H 0.119 0.881 11 C -0.144 4.144 12 C -0.186 4.186 13 C 0.029 3.971 14 N -0.312 5.312 15 C -0.388 4.388 16 H 0.082 0.918 17 C -0.191 4.191 18 N -0.546 5.546 19 Si 0.728 3.272 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.205 1.205 23 C 0.058 3.942 24 C -0.186 4.186 25 C -0.066 4.066 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.182 0.818 30 H 0.162 0.838 31 H 0.223 0.777 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.043 0.957 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.392 17.100 2.596 21.875 hybrid contribution -0.381 -0.177 0.407 0.585 sum -13.774 16.923 3.003 22.026 Atomic orbital electron populations 1.22092 0.77101 1.04534 1.03448 1.43594 1.06646 1.05963 1.56493 1.21691 0.90639 0.91158 1.11376 1.22038 0.96063 0.93382 1.07967 1.20542 0.92874 0.93295 1.16801 1.17366 0.82413 0.87131 0.76133 1.90845 1.86395 1.14475 1.50173 1.46078 1.05804 1.09805 1.75651 1.20467 0.82888 0.93574 0.97860 0.88068 1.20569 0.95981 0.98359 0.99501 1.21446 0.97563 0.98708 1.00867 1.20687 0.91782 0.90687 0.93972 1.43674 1.36745 1.13142 1.37648 1.19170 1.40782 0.85220 0.93656 0.91831 1.24996 1.01648 0.97338 0.95135 1.70071 1.49947 1.28336 1.06273 0.86362 0.78907 0.82573 0.79364 1.21346 1.21926 1.20534 1.20990 0.92897 0.90774 0.89542 1.22485 0.99839 1.00842 0.95443 1.21822 0.89936 0.91704 1.03141 0.90758 0.89621 0.89749 0.81846 0.83841 0.77708 0.93455 0.92926 0.91948 0.93141 0.93662 0.95036 0.93806 0.95708 0.90608 0.92620 0.93743 0.80842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 11.03 59.85 0.66 1.02 16 2 N -0.45 -4.32 3.09 -124.53 -0.38 -4.70 16 3 C -0.02 -0.21 11.34 -16.82 -0.19 -0.40 16 4 C -0.17 -1.92 10.56 -37.50 -0.40 -2.31 16 5 C -0.23 -3.31 6.29 -103.35 -0.65 -3.96 16 6 C 0.58 10.75 7.63 -12.59 -0.10 10.65 16 7 O -0.54 -12.58 16.57 5.25 0.09 -12.50 16 8 N -0.72 -11.95 4.93 -56.19 -0.28 -12.23 16 9 C 0.16 3.00 2.07 -69.21 -0.14 2.86 16 10 H 0.10 2.44 6.92 -51.93 -0.36 2.08 16 11 C -0.11 -1.75 4.70 -29.78 -0.14 -1.89 16 12 C -0.14 -2.62 5.74 -28.59 -0.16 -2.78 16 13 C 0.16 3.35 5.65 -4.09 -0.02 3.32 16 14 N -0.59 -15.21 2.26 -171.88 -0.39 -15.60 16 15 C -0.26 -7.37 9.43 -15.06 -0.14 -7.51 16 16 H 0.06 1.79 7.88 -52.49 -0.41 1.37 16 17 C 0.01 0.22 4.83 -17.43 -0.08 0.14 16 18 N -0.90 -27.43 11.12 55.49 0.62 -26.81 16 19 Si 0.90 23.06 29.59 -169.99 -5.03 18.03 16 20 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 21 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 23 C 0.18 4.69 4.71 -2.76 -0.01 4.68 16 24 C -0.15 -3.03 5.39 -27.12 -0.15 -3.18 16 25 C 0.07 0.88 11.12 -16.84 -0.19 0.69 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.36 8.13 -51.93 -0.42 -0.06 16 28 H 0.08 0.27 8.13 -51.93 -0.42 -0.15 16 29 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.14 1.30 7.70 -52.48 -0.40 0.90 16 31 H 0.39 5.09 7.72 -40.82 -0.32 4.77 16 32 H 0.05 0.69 8.04 -51.93 -0.42 0.27 16 33 H 0.05 0.80 7.35 -51.93 -0.38 0.42 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.98 7.99 -51.93 -0.41 0.56 16 37 H 0.03 0.64 8.06 -51.93 -0.42 0.22 16 38 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 39 H 0.02 0.68 8.03 -51.93 -0.42 0.26 16 40 H 0.08 2.23 6.39 -51.93 -0.33 1.90 16 41 H 0.06 1.18 7.85 -51.92 -0.41 0.77 16 42 H 0.04 0.84 7.31 -51.93 -0.38 0.46 16 43 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -35.25 345.71 -8.63 -43.89 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.75 Total: 3.38 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.72 Total: 1.32 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.43 Total: -59.34 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.03 Total: 18.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.25 -8.63 -43.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052306442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.787 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds