Wall clock time and date at job start Tue Mar 31 2020 07:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36443 * 124.84628 * 2 1 4 4 C 1.34494 * 108.85260 * 179.97438 * 3 2 1 5 5 C 1.46682 * 106.33158 * 0.02562 * 4 3 2 6 6 C 1.47267 * 126.93974 * 179.97438 * 5 4 3 7 7 O 1.21626 * 119.99776 * 180.02562 * 6 5 4 8 8 N 1.34775 * 120.00153 * 0.02562 * 6 5 4 9 9 C 1.46502 * 119.99961 * 180.02562 * 8 6 5 10 10 H 1.08992 * 109.50571 * 325.05278 * 9 8 6 11 11 C 1.52576 * 109.48705 * 205.00009 * 9 8 6 12 12 C 1.47090 * 114.32498 * 155.02300 * 11 9 8 13 13 C 1.54860 * 110.32374 * 62.79675 * 12 11 9 14 14 N 1.44575 * 109.60592 * 288.73620 * 13 12 11 15 15 C 1.36935 * 118.64242 * 270.70972 * 14 13 12 16 16 H 1.08002 * 120.00415 * 27.23781 * 15 14 13 17 17 C 1.38815 * 120.00137 * 206.96980 * 15 14 13 18 18 N 1.31620 * 119.99298 * 17.02045 * 17 15 14 19 19 Si 1.86791 * 120.00118 * 197.02174 * 17 15 14 20 20 H 1.48500 * 109.47253 * 90.00232 * 19 17 15 21 21 H 1.48502 * 109.47293 * 209.99654 * 19 17 15 22 22 H 1.48498 * 109.47439 * 329.99788 * 19 17 15 23 23 C 1.47605 * 122.71592 * 90.97965 * 14 13 12 24 24 C 1.50877 * 109.49263 * 85.11581 * 9 8 6 25 25 C 1.34660 * 124.85078 * 180.26243 * 2 1 3 26 26 H 1.09002 * 109.47244 * 90.02577 * 1 2 3 27 27 H 1.09001 * 109.47019 * 210.01984 * 1 2 3 28 28 H 1.09001 * 109.47507 * 330.02318 * 1 2 3 29 29 H 1.07998 * 125.57651 * 0.02562 * 3 2 1 30 30 H 1.08004 * 126.83136 * 180.02562 * 4 3 2 31 31 H 0.96997 * 120.00026 * 0.02562 * 8 6 5 32 32 H 1.09002 * 108.51087 * 33.76428 * 11 9 8 33 33 H 1.09001 * 108.38461 * 276.18839 * 11 9 8 34 34 H 1.08998 * 109.32303 * 302.53792 * 12 11 9 35 35 H 1.08998 * 109.18452 * 182.97207 * 12 11 9 36 36 H 1.08998 * 109.45004 * 168.69132 * 13 12 11 37 37 H 1.09004 * 109.44913 * 48.77621 * 13 12 11 38 38 H 0.97003 * 119.99220 * 179.97438 * 18 17 15 39 39 H 1.08996 * 108.94504 * 78.30134 * 23 14 13 40 40 H 1.08998 * 108.95095 * 196.93066 * 23 14 13 41 41 H 1.09008 * 109.36313 * 332.04027 * 24 9 8 42 42 H 1.08996 * 109.36870 * 91.65611 * 24 9 8 43 43 H 1.07998 * 125.80077 * 0.06893 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2446 1.1198 0.0000 4 6 3.5375 0.7492 0.0006 5 6 3.5461 -0.7176 0.0003 6 6 4.7284 -1.5957 0.0002 7 8 4.5885 -2.8039 -0.0005 8 7 5.9653 -1.0605 0.0009 9 6 7.1414 -1.9340 0.0002 10 1 6.9314 -2.8276 0.5878 11 6 8.3272 -1.1916 0.6090 12 6 9.3559 -2.0670 1.1913 13 6 9.9853 -2.9608 0.0945 14 7 9.0281 -3.9593 -0.3261 15 6 8.9933 -5.1562 0.3382 16 1 9.3081 -5.2106 1.3699 17 6 8.5483 -6.2987 -0.3127 18 7 8.4793 -6.3225 -1.6269 19 14 8.0475 -7.8020 0.6764 20 1 6.6001 -7.7227 0.9988 21 1 8.3109 -9.0281 -0.1189 22 1 8.8332 -7.8504 1.9356 23 6 8.0905 -3.7441 -1.4457 24 6 7.4736 -2.3301 -1.4172 25 6 2.2345 -1.1051 -0.0051 26 1 -0.3634 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5141 28 1 -0.3634 0.8902 0.5135 29 1 1.8827 2.1373 0.0004 30 1 4.3980 1.4018 0.0011 31 1 6.0769 -0.0970 0.0018 32 1 7.9560 -0.5271 1.3892 33 1 8.7894 -0.5848 -0.1697 34 1 8.9019 -2.6986 1.9548 35 1 10.1331 -1.4529 1.6463 36 1 10.8724 -3.4534 0.4925 37 1 10.2655 -2.3442 -0.7597 38 1 8.1687 -7.1210 -2.0817 39 1 8.6244 -3.8822 -2.3858 40 1 7.2899 -4.4811 -1.3836 41 1 6.5639 -2.3205 -2.0178 42 1 8.1868 -1.6188 -1.8336 43 1 1.8767 -2.1240 -0.0108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052306442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:58 Heat of formation + Delta-G solvation = 13.406685 kcal Electronic energy + Delta-G solvation = -23698.343392 eV Core-core repulsion = 20358.061539 eV Total energy + Delta-G solvation = -3340.281852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.11311 -40.63379 -38.97645 -36.24006 -34.48717 -33.67430 -32.66434 -31.97680 -30.06264 -28.08825 -27.27576 -25.57565 -25.09607 -23.33076 -21.60516 -21.21279 -20.83165 -20.40946 -18.77522 -18.53142 -17.30643 -16.75986 -16.63155 -16.31910 -16.08048 -15.66146 -15.34039 -15.15618 -14.79063 -14.64184 -14.21725 -13.99973 -13.87774 -13.61151 -13.28981 -13.27219 -13.01398 -13.00196 -12.92180 -12.77025 -12.48179 -12.08994 -12.00547 -11.73315 -11.48484 -11.37735 -11.32458 -10.84480 -10.43123 -10.03782 -9.47858 -9.26760 -8.63301 -7.85040 -5.30207 0.80466 1.39931 1.46311 1.51234 1.56921 1.94489 2.51065 2.52642 2.65696 3.29043 3.70750 3.83842 3.99828 4.04179 4.10085 4.12034 4.34995 4.43241 4.47133 4.49787 4.49945 4.62491 4.71662 4.74563 4.86236 4.96841 5.02574 5.03796 5.15243 5.20856 5.25624 5.28372 5.39689 5.54797 5.61014 5.68109 5.75077 5.77476 5.80603 6.08718 6.39047 6.42490 6.81025 7.19450 7.49635 7.97755 8.36429 9.19963 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.004217 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.344479 B = 6637.858968 C = 7618.335141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.443 5.443 3 C -0.006 4.006 4 C -0.181 4.181 5 C -0.262 4.262 6 C 0.575 3.425 7 O -0.606 6.606 8 N -0.707 5.707 9 C 0.164 3.836 10 H 0.046 0.954 11 C -0.102 4.102 12 C -0.132 4.132 13 C 0.148 3.852 14 N -0.604 5.604 15 C -0.262 4.262 16 H 0.065 0.935 17 C -0.050 4.050 18 N -0.934 5.934 19 Si 0.956 3.044 20 H -0.298 1.298 21 H -0.290 1.290 22 H -0.262 1.262 23 C 0.197 3.803 24 C -0.130 4.130 25 C 0.057 3.943 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.208 0.792 30 H 0.165 0.835 31 H 0.412 0.588 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.092 0.908 36 H 0.040 0.960 37 H 0.049 0.951 38 H 0.246 0.754 39 H -0.002 1.002 40 H 0.024 0.976 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.578 22.117 3.865 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.133 4.133 4 C -0.205 4.205 5 C -0.273 4.273 6 C 0.365 3.635 7 O -0.489 6.489 8 N -0.357 5.357 9 C 0.059 3.941 10 H 0.064 0.936 11 C -0.140 4.140 12 C -0.172 4.172 13 C 0.022 3.978 14 N -0.326 5.326 15 C -0.392 4.392 16 H 0.082 0.918 17 C -0.246 4.246 18 N -0.580 5.580 19 Si 0.785 3.215 20 H -0.226 1.226 21 H -0.217 1.217 22 H -0.187 1.187 23 C 0.071 3.929 24 C -0.170 4.170 25 C -0.080 4.080 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.131 0.869 29 H 0.224 0.776 30 H 0.183 0.817 31 H 0.249 0.751 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.016 0.984 40 H 0.042 0.958 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -14.053 21.224 3.758 25.731 hybrid contribution -0.243 -1.353 0.057 1.376 sum -14.296 19.872 3.815 24.775 Atomic orbital electron populations 1.22448 0.74288 1.06301 1.04854 1.43915 1.08344 1.05063 1.54459 1.22374 0.89902 0.92551 1.08470 1.22305 0.98044 0.91413 1.08704 1.20413 0.91922 0.94906 1.20033 1.18051 0.83872 0.86814 0.74722 1.90806 1.87312 1.17447 1.53323 1.45807 1.04546 1.10557 1.74827 1.20141 0.85128 0.92919 0.95906 0.93595 1.20519 0.94237 0.98126 1.01093 1.21295 0.98726 0.98333 0.98887 1.20959 0.90909 0.90352 0.95628 1.43846 1.37949 1.13471 1.37354 1.19488 1.39539 0.86356 0.93836 0.91752 1.25731 1.02576 1.00201 0.96043 1.70218 1.51473 1.28700 1.07649 0.85423 0.77785 0.79541 0.78746 1.22560 1.21656 1.18670 1.20624 0.91226 0.92474 0.88535 1.22281 0.99597 0.98272 0.96858 1.21827 0.90188 0.92648 1.03347 0.89488 0.89081 0.86905 0.77569 0.81709 0.75135 0.90373 0.90097 0.94565 0.89006 0.94202 0.93283 0.94469 0.98397 0.95765 0.93793 0.90624 0.81551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 11.03 127.77 1.41 1.84 16 2 N -0.44 -7.36 3.09 -547.89 -1.69 -9.05 16 3 C -0.01 -0.09 11.34 83.12 0.94 0.85 16 4 C -0.18 -3.59 10.56 23.62 0.25 -3.34 16 5 C -0.26 -7.67 6.29 -19.04 -0.12 -7.79 16 6 C 0.57 22.00 7.63 86.62 0.66 22.66 16 7 O -0.61 -30.39 16.57 -4.11 -0.07 -30.46 16 8 N -0.71 -22.99 4.93 -449.93 -2.22 -25.21 16 9 C 0.16 6.33 2.07 44.16 0.09 6.42 16 10 H 0.05 2.33 6.92 -2.39 -0.02 2.31 16 11 C -0.10 -3.05 4.70 28.62 0.13 -2.92 16 12 C -0.13 -4.45 5.74 29.39 0.17 -4.28 16 13 C 0.15 6.16 5.65 87.37 0.49 6.66 16 14 N -0.60 -32.04 2.26 -697.70 -1.58 -33.62 16 15 C -0.26 -15.45 9.43 84.03 0.79 -14.66 16 16 H 0.06 3.71 7.88 -2.91 -0.02 3.69 16 17 C -0.05 -3.06 4.83 84.86 0.41 -2.65 16 18 N -0.93 -59.93 11.12 21.65 0.24 -59.69 16 19 Si 0.96 49.41 29.59 68.60 2.03 51.44 16 20 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 21 H -0.29 -14.75 7.11 99.48 0.71 -14.05 16 22 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 23 C 0.20 10.63 4.71 86.61 0.41 11.04 16 24 C -0.13 -5.49 5.39 30.34 0.16 -5.33 16 25 C 0.06 1.45 11.12 83.91 0.93 2.39 16 26 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.09 0.57 8.13 -2.39 -0.02 0.55 16 28 H 0.11 0.21 8.13 -2.39 -0.02 0.19 16 29 H 0.21 1.19 8.06 -2.91 -0.02 1.17 16 30 H 0.17 2.37 7.70 -2.91 -0.02 2.35 16 31 H 0.41 9.72 7.72 -92.71 -0.72 9.00 16 32 H 0.08 1.93 8.04 -2.39 -0.02 1.91 16 33 H 0.08 2.05 7.35 -2.39 -0.02 2.03 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.04 1.69 7.99 -2.39 -0.02 1.67 16 37 H 0.05 1.87 8.06 -2.38 -0.02 1.85 16 38 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.00 -0.12 8.03 -2.39 -0.02 -0.14 16 40 H 0.02 1.52 6.39 -2.39 -0.02 1.51 16 41 H 0.04 1.93 7.85 -2.38 -0.02 1.91 16 42 H 0.08 2.71 7.31 -2.39 -0.02 2.70 16 43 H 0.17 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -84.74 345.71 3.74 -81.00 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.28 Total: 14.67 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 6.74 Total: 10.90 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -5.24 Total: -127.57 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.07 Total: -30.46 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 2.03 Total: 51.44 kcal Total: -84.74 3.74 -81.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052306442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.411 kcal (2) G-P(sol) polarization free energy of solvation -84.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds