Wall clock time and date at job start Tue Mar 31 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47024 * 2 1 4 4 C 1.35533 * 125.67638 * 265.44972 * 3 2 1 5 5 C 1.35457 * 108.87207 * 180.23216 * 4 3 2 6 6 C 1.39833 * 107.86402 * 359.77002 * 5 4 3 7 7 C 1.37654 * 125.68089 * 85.28063 * 3 2 1 8 8 C 1.46672 * 126.23181 * 0.03657 * 7 3 2 9 9 O 1.21703 * 120.00261 * 354.39161 * 8 7 3 10 10 N 1.34782 * 120.00051 * 174.12074 * 8 7 3 11 11 C 1.46497 * 119.99848 * 185.02249 * 10 8 7 12 12 H 1.08999 * 110.89195 * 31.11074 * 11 10 8 13 13 C 1.54909 * 111.00033 * 267.18896 * 11 10 8 14 14 N 1.47423 * 104.83456 * 204.91572 * 13 11 10 15 15 C 1.36936 * 125.65152 * 204.14980 * 14 13 11 16 16 H 1.08005 * 120.00145 * 179.97438 * 15 14 13 17 17 C 1.38809 * 120.00081 * 359.97438 * 15 14 13 18 18 N 1.31614 * 119.99808 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99936 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47202 * 60.00317 * 19 17 15 21 21 H 1.48504 * 109.47118 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47220 * 299.99904 * 19 17 15 23 23 C 1.47024 * 108.70193 * 24.13227 * 14 13 11 24 24 C 1.54333 * 107.26850 * 358.93843 * 23 14 13 25 25 H 1.08995 * 110.86807 * 96.24368 * 24 23 14 26 26 C 1.53001 * 110.71662 * 219.44278 * 24 23 14 27 27 H 1.08993 * 109.47201 * 60.00176 * 1 2 3 28 28 H 1.09007 * 109.46888 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47244 * 300.00047 * 1 2 3 30 30 H 1.08998 * 109.47305 * 239.99537 * 2 1 3 31 31 H 1.09002 * 109.46976 * 119.99715 * 2 1 3 32 32 H 1.08002 * 125.56928 * 0.02562 * 4 3 2 33 33 H 1.07998 * 126.06459 * 179.79837 * 5 4 3 34 34 H 1.07996 * 126.46024 * 179.97438 * 6 5 4 35 35 H 0.96993 * 119.99846 * 5.01760 * 10 8 7 36 36 H 1.09000 * 110.37229 * 323.76050 * 13 11 10 37 37 H 1.09005 * 110.36439 * 86.08160 * 13 11 10 38 38 H 0.97011 * 119.99950 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.88649 * 239.52525 * 23 14 13 40 40 H 1.08997 * 109.88371 * 118.35147 * 23 14 13 41 41 H 1.09000 * 109.46750 * 173.52461 * 26 24 23 42 42 H 1.09000 * 109.47033 * 293.52152 * 26 24 23 43 43 H 1.08996 * 109.47094 * 53.52386 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3641 2.0973 -1.0975 5 6 2.7719 3.3285 -0.7067 6 6 2.6742 3.3905 0.6868 7 6 2.1992 2.1688 1.1143 8 6 1.9400 1.7775 2.5039 9 8 1.4289 0.7002 2.7475 10 7 2.2728 2.6086 3.5114 11 6 2.1160 2.1740 4.9016 12 1 2.2623 1.0976 4.9912 13 6 0.7353 2.5961 5.4629 14 7 0.9284 2.6721 6.9225 15 6 -0.0567 2.5476 7.8655 16 1 0.1883 2.6184 8.9150 17 6 -1.3702 2.3305 7.4725 18 7 -1.6687 2.2438 6.1936 19 14 -2.7139 2.1600 8.7589 20 1 -2.7829 3.4018 9.5703 21 1 -4.0182 1.9351 8.0855 22 1 -2.4089 1.0070 9.6435 23 6 2.3540 2.9031 7.1980 24 6 3.0823 2.9465 5.8380 25 1 3.2093 3.9742 5.4982 26 6 4.4346 2.2362 5.9255 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3245 1.7430 -2.1170 33 1 3.1118 4.1216 -1.3562 34 1 2.9240 4.2359 1.3107 35 1 2.6161 3.4945 3.3160 36 1 0.4464 3.5698 5.0673 37 1 -0.0185 1.8476 5.2185 38 1 -2.5866 2.0916 5.9190 39 1 2.7509 2.0896 7.8053 40 1 2.4820 3.8528 7.7174 41 1 4.8791 2.1776 4.9319 42 1 5.0964 2.7950 6.5871 43 1 4.2918 1.2300 6.3195 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080945749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:37 Heat of formation + Delta-G solvation = 36.298842 kcal Electronic energy + Delta-G solvation = -23817.681797 eV Core-core repulsion = 20478.392623 eV Total energy + Delta-G solvation = -3339.289174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31304 -39.03211 -37.29683 -34.42988 -33.63109 -32.57048 -30.33452 -29.54703 -29.26276 -27.38799 -25.59700 -23.86159 -23.49405 -22.17794 -20.64378 -20.01440 -19.93190 -18.94574 -17.64059 -16.86385 -15.86693 -15.49483 -15.21701 -14.83327 -14.48514 -13.94502 -13.90786 -13.68938 -13.59436 -12.97817 -12.89155 -12.49803 -12.41488 -12.32783 -12.20335 -12.14038 -11.88288 -11.67791 -11.20556 -11.17064 -11.05536 -10.74994 -10.59898 -10.36206 -9.95898 -9.75317 -9.73916 -9.52880 -8.71790 -8.61475 -8.48115 -8.09073 -6.80358 -5.59563 -3.03474 1.65668 2.74724 2.80147 3.43724 3.47380 3.49455 3.67043 3.69631 4.52664 4.69679 4.93950 5.01229 5.07072 5.19048 5.27454 5.34303 5.39365 5.41410 5.48490 5.56635 5.70011 5.78481 5.81874 5.99632 6.06563 6.08150 6.17896 6.20505 6.23587 6.27919 6.40763 6.51861 6.69086 6.79006 6.84830 7.00105 7.05543 7.26952 7.51567 7.65054 7.89058 7.98803 8.41609 8.62146 9.25048 9.86455 10.49875 11.43013 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.004496 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.027564 B = 6225.950670 C = 7265.963714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.407 5.407 4 C 0.006 3.994 5 C -0.209 4.209 6 C -0.149 4.149 7 C -0.038 4.038 8 C 0.583 3.417 9 O -0.542 6.542 10 N -0.700 5.700 11 C 0.123 3.877 12 H 0.092 0.908 13 C 0.149 3.851 14 N -0.603 5.603 15 C -0.227 4.227 16 H 0.078 0.922 17 C -0.009 4.009 18 N -0.918 5.918 19 Si 0.915 3.085 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.142 3.858 24 C -0.112 4.112 25 H 0.074 0.926 26 C -0.137 4.137 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.164 0.836 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.396 0.604 36 H 0.013 0.987 37 H 0.112 0.888 38 H 0.253 0.747 39 H 0.027 0.973 40 H 0.023 0.977 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.056 -0.038 -14.055 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 N -0.080 5.080 4 C -0.129 4.129 5 C -0.233 4.233 6 C -0.175 4.175 7 C -0.152 4.152 8 C 0.370 3.630 9 O -0.420 6.420 10 N -0.350 5.350 11 C 0.018 3.982 12 H 0.110 0.890 13 C 0.023 3.977 14 N -0.330 5.330 15 C -0.356 4.356 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.566 5.566 19 Si 0.745 3.255 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.015 3.985 24 C -0.131 4.131 25 H 0.092 0.908 26 C -0.195 4.195 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.181 0.819 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.230 0.770 36 H 0.031 0.969 37 H 0.130 0.870 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.324 -1.253 -13.808 17.286 hybrid contribution -0.562 0.563 0.418 0.899 sum 9.762 -0.690 -13.389 16.584 Atomic orbital electron populations 1.22076 0.93819 1.03065 1.03201 1.22006 0.96274 0.79521 1.04437 1.44089 1.46972 1.11723 1.05223 1.21933 1.06253 0.93219 0.91534 1.20760 1.10038 0.97428 0.95119 1.21321 1.04605 0.96066 0.95493 1.20251 1.13684 0.93156 0.88142 1.16956 0.78363 0.84459 0.83251 1.90813 1.43286 1.23112 1.84837 1.45529 1.65896 1.17631 1.05939 1.22705 0.98681 0.99158 0.77660 0.88985 1.22232 0.92428 1.00444 0.82598 1.44388 1.01548 1.84701 1.02326 1.19020 0.86450 1.42372 0.87710 0.90397 1.24813 0.97242 1.02133 0.96307 1.69801 1.17952 1.55860 1.12972 0.86158 0.81214 0.77915 0.80222 1.21212 1.21589 1.21120 1.21340 0.85986 0.97867 0.93284 1.22441 0.94506 0.99047 0.97143 0.90755 1.21742 0.96187 1.00533 1.01018 0.92656 0.90841 0.90716 0.89758 0.87783 0.81866 0.84342 0.84085 0.76967 0.96859 0.87035 0.93648 0.95480 0.95865 0.93072 0.92860 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 10.17 37.16 0.38 -1.62 16 2 C 0.10 1.17 6.10 -4.04 -0.02 1.14 16 3 N -0.41 -5.40 2.76 -112.87 -0.31 -5.71 16 4 C 0.01 0.06 11.37 -16.91 -0.19 -0.13 16 5 C -0.21 -2.36 10.81 -39.98 -0.43 -2.79 16 6 C -0.15 -1.91 10.35 -39.12 -0.41 -2.31 16 7 C -0.04 -0.58 6.88 -81.98 -0.56 -1.14 16 8 C 0.58 10.46 7.77 -12.85 -0.10 10.36 16 9 O -0.54 -11.44 13.95 5.19 0.07 -11.37 16 10 N -0.70 -11.78 5.18 -53.03 -0.27 -12.05 16 11 C 0.12 2.43 2.83 -65.79 -0.19 2.24 16 12 H 0.09 2.00 7.51 -51.93 -0.39 1.61 16 13 C 0.15 3.75 5.58 -2.53 -0.01 3.73 16 14 N -0.60 -15.77 3.39 -170.07 -0.58 -16.35 16 15 C -0.23 -6.46 10.27 -15.06 -0.15 -6.62 16 16 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -27.74 10.09 55.49 0.56 -27.18 16 19 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.14 2.95 6.84 -3.06 -0.02 2.93 16 24 C -0.11 -1.90 3.20 -88.78 -0.28 -2.19 16 25 H 0.07 1.16 8.00 -51.93 -0.42 0.74 16 26 C -0.14 -1.92 9.16 37.16 0.34 -1.58 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 29 H 0.07 1.19 7.60 -51.93 -0.39 0.79 16 30 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 31 H 0.10 1.43 6.73 -51.93 -0.35 1.08 16 32 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.14 1.52 7.45 -52.49 -0.39 1.12 16 35 H 0.40 5.50 7.47 -40.82 -0.30 5.20 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.11 3.30 5.87 -51.93 -0.30 2.99 16 38 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.03 0.56 7.76 -51.93 -0.40 0.16 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -33.44 348.78 -8.78 -42.21 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.72 Total: 6.01 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.76 Total: 1.68 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.60 Total: -61.28 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.07 Total: -11.37 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.44 -8.78 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080945749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.513 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds