Wall clock time and date at job start Tue Mar 31 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47024 * 2 1 4 4 C 1.35533 * 125.67638 * 265.44972 * 3 2 1 5 5 C 1.35457 * 108.87207 * 180.23216 * 4 3 2 6 6 C 1.39833 * 107.86402 * 359.77002 * 5 4 3 7 7 C 1.37654 * 125.68089 * 85.28063 * 3 2 1 8 8 C 1.46672 * 126.23181 * 0.03657 * 7 3 2 9 9 O 1.21703 * 120.00261 * 354.39161 * 8 7 3 10 10 N 1.34782 * 120.00051 * 174.12074 * 8 7 3 11 11 C 1.46497 * 119.99848 * 185.02249 * 10 8 7 12 12 H 1.08999 * 110.89195 * 31.11074 * 11 10 8 13 13 C 1.54909 * 111.00033 * 267.18896 * 11 10 8 14 14 N 1.47423 * 104.83456 * 204.91572 * 13 11 10 15 15 C 1.36936 * 125.65152 * 204.14980 * 14 13 11 16 16 H 1.08005 * 120.00145 * 179.97438 * 15 14 13 17 17 C 1.38809 * 120.00081 * 359.97438 * 15 14 13 18 18 N 1.31614 * 119.99808 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99936 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47202 * 60.00317 * 19 17 15 21 21 H 1.48504 * 109.47118 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47220 * 299.99904 * 19 17 15 23 23 C 1.47024 * 108.70193 * 24.13227 * 14 13 11 24 24 C 1.54333 * 107.26850 * 358.93843 * 23 14 13 25 25 H 1.08995 * 110.86807 * 96.24368 * 24 23 14 26 26 C 1.53001 * 110.71662 * 219.44278 * 24 23 14 27 27 H 1.08993 * 109.47201 * 60.00176 * 1 2 3 28 28 H 1.09007 * 109.46888 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47244 * 300.00047 * 1 2 3 30 30 H 1.08998 * 109.47305 * 239.99537 * 2 1 3 31 31 H 1.09002 * 109.46976 * 119.99715 * 2 1 3 32 32 H 1.08002 * 125.56928 * 0.02562 * 4 3 2 33 33 H 1.07998 * 126.06459 * 179.79837 * 5 4 3 34 34 H 1.07996 * 126.46024 * 179.97438 * 6 5 4 35 35 H 0.96993 * 119.99846 * 5.01760 * 10 8 7 36 36 H 1.09000 * 110.37229 * 323.76050 * 13 11 10 37 37 H 1.09005 * 110.36439 * 86.08160 * 13 11 10 38 38 H 0.97011 * 119.99950 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.88649 * 239.52525 * 23 14 13 40 40 H 1.08997 * 109.88371 * 118.35147 * 23 14 13 41 41 H 1.09000 * 109.46750 * 173.52461 * 26 24 23 42 42 H 1.09000 * 109.47033 * 293.52152 * 26 24 23 43 43 H 1.08996 * 109.47094 * 53.52386 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3641 2.0973 -1.0975 5 6 2.7719 3.3285 -0.7067 6 6 2.6742 3.3905 0.6868 7 6 2.1992 2.1688 1.1143 8 6 1.9400 1.7775 2.5039 9 8 1.4289 0.7002 2.7475 10 7 2.2728 2.6086 3.5114 11 6 2.1160 2.1740 4.9016 12 1 2.2623 1.0976 4.9912 13 6 0.7353 2.5961 5.4629 14 7 0.9284 2.6721 6.9225 15 6 -0.0567 2.5476 7.8655 16 1 0.1883 2.6184 8.9150 17 6 -1.3702 2.3305 7.4725 18 7 -1.6687 2.2438 6.1936 19 14 -2.7139 2.1600 8.7589 20 1 -2.7829 3.4018 9.5703 21 1 -4.0182 1.9351 8.0855 22 1 -2.4089 1.0070 9.6435 23 6 2.3540 2.9031 7.1980 24 6 3.0823 2.9465 5.8380 25 1 3.2093 3.9742 5.4982 26 6 4.4346 2.2362 5.9255 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3245 1.7430 -2.1170 33 1 3.1118 4.1216 -1.3562 34 1 2.9240 4.2359 1.3107 35 1 2.6161 3.4945 3.3160 36 1 0.4464 3.5698 5.0673 37 1 -0.0185 1.8476 5.2185 38 1 -2.5866 2.0916 5.9190 39 1 2.7509 2.0896 7.8053 40 1 2.4820 3.8528 7.7174 41 1 4.8791 2.1776 4.9319 42 1 5.0964 2.7950 6.5871 43 1 4.2918 1.2300 6.3195 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080945749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:36 Heat of formation + Delta-G solvation = 14.467416 kcal Electronic energy + Delta-G solvation = -23818.628479 eV Core-core repulsion = 20478.392623 eV Total energy + Delta-G solvation = -3340.235855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.32203 -40.51271 -38.91660 -35.80768 -35.05189 -34.18247 -32.18421 -30.77418 -30.21788 -29.01814 -27.36461 -25.47850 -24.52075 -23.56690 -22.04340 -21.52835 -21.26992 -20.18408 -18.93316 -18.73064 -17.39356 -16.95864 -16.64619 -16.29835 -15.65899 -15.56852 -15.25076 -15.04990 -14.58404 -14.45897 -14.40743 -14.19750 -13.90683 -13.44765 -13.37476 -13.17676 -13.09550 -13.04398 -12.85647 -12.82281 -12.59043 -12.26273 -12.17829 -12.00556 -11.84395 -11.66237 -11.43779 -10.98531 -10.77304 -10.03560 -9.66027 -9.11631 -8.91301 -7.78077 -5.25418 0.54713 1.43307 1.47947 1.54267 1.72284 1.89487 2.37785 2.44276 2.50566 3.31106 3.63834 3.69175 3.82294 3.93071 4.02718 4.08880 4.11290 4.20152 4.36363 4.47924 4.49547 4.51727 4.60767 4.65338 4.74976 4.87243 4.88371 5.02720 5.07823 5.15339 5.21489 5.22455 5.28000 5.33361 5.43825 5.48714 5.61775 5.79431 5.89824 6.06171 6.26783 6.40500 6.62374 7.05402 7.27670 7.75274 8.38117 9.22152 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.004496 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.027564 B = 6225.950670 C = 7265.963714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.098 3.902 3 N -0.416 5.416 4 C 0.024 3.976 5 C -0.218 4.218 6 C -0.138 4.138 7 C -0.085 4.085 8 C 0.577 3.423 9 O -0.587 6.587 10 N -0.691 5.691 11 C 0.142 3.858 12 H 0.068 0.932 13 C 0.158 3.842 14 N -0.627 5.627 15 C -0.242 4.242 16 H 0.087 0.913 17 C -0.070 4.070 18 N -0.951 5.951 19 Si 0.983 3.017 20 H -0.273 1.273 21 H -0.296 1.296 22 H -0.275 1.275 23 C 0.134 3.866 24 C -0.094 4.094 25 H 0.098 0.902 26 C -0.129 4.129 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.025 0.975 30 H 0.128 0.872 31 H 0.075 0.925 32 H 0.205 0.795 33 H 0.168 0.832 34 H 0.158 0.842 35 H 0.412 0.588 36 H -0.011 1.011 37 H 0.061 0.939 38 H 0.244 0.756 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.222 1.018 -15.584 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.023 4.023 3 N -0.090 5.090 4 C -0.112 4.112 5 C -0.241 4.241 6 C -0.165 4.165 7 C -0.198 4.198 8 C 0.366 3.634 9 O -0.469 6.469 10 N -0.341 5.341 11 C 0.035 3.965 12 H 0.086 0.914 13 C 0.031 3.969 14 N -0.353 5.353 15 C -0.371 4.371 16 H 0.105 0.895 17 C -0.263 4.263 18 N -0.600 5.600 19 Si 0.811 3.189 20 H -0.199 1.199 21 H -0.223 1.223 22 H -0.201 1.201 23 C 0.009 3.991 24 C -0.113 4.113 25 H 0.116 0.884 26 C -0.186 4.186 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.044 0.956 30 H 0.146 0.854 31 H 0.094 0.906 32 H 0.222 0.778 33 H 0.186 0.814 34 H 0.176 0.824 35 H 0.249 0.751 36 H 0.007 0.993 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.549 -0.158 -15.320 19.804 hybrid contribution -1.219 0.256 0.812 1.487 sum 11.330 0.099 -14.508 18.408 Atomic orbital electron populations 1.22010 0.94494 1.03515 1.01477 1.22055 0.95675 0.79410 1.05119 1.44291 1.47175 1.12118 1.05371 1.22714 1.03297 0.92759 0.92422 1.21175 1.09979 0.98449 0.94522 1.21694 1.02573 0.95334 0.96861 1.19982 1.17656 0.95008 0.87155 1.17507 0.77272 0.83820 0.84763 1.90785 1.45324 1.25081 1.85696 1.45315 1.65813 1.18408 1.04614 1.22158 0.96361 0.98211 0.79738 0.91402 1.21868 0.94520 0.97485 0.83019 1.44696 1.03546 1.84778 1.02311 1.19490 0.87403 1.41485 0.88730 0.89495 1.25738 0.99738 1.02496 0.98289 1.70135 1.17576 1.57237 1.15053 0.85081 0.77698 0.78411 0.77731 1.19858 1.22256 1.20102 1.21606 0.83506 0.98282 0.95755 1.22390 0.94927 1.00285 0.93718 0.88403 1.21688 0.94393 0.99859 1.02672 0.90918 0.89427 0.95596 0.85440 0.90614 0.77819 0.81437 0.82426 0.75056 0.99297 0.92142 0.94653 0.95017 0.94753 0.91453 0.90129 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.17 71.98 0.73 -3.17 16 2 C 0.10 2.27 6.10 86.38 0.53 2.80 16 3 N -0.42 -10.51 2.76 -511.02 -1.41 -11.92 16 4 C 0.02 0.43 11.37 83.48 0.95 1.38 16 5 C -0.22 -4.12 10.81 22.01 0.24 -3.89 16 6 C -0.14 -3.27 10.35 22.57 0.23 -3.04 16 7 C -0.09 -2.57 6.88 40.35 0.28 -2.30 16 8 C 0.58 21.72 7.77 86.44 0.67 22.39 16 9 O -0.59 -26.86 13.95 -4.36 -0.06 -26.92 16 10 N -0.69 -23.83 5.18 -439.91 -2.28 -26.11 16 11 C 0.14 5.79 2.83 46.38 0.13 5.92 16 12 H 0.07 3.12 7.51 -2.39 -0.02 3.10 16 13 C 0.16 8.42 5.58 86.86 0.48 8.90 16 14 N -0.63 -33.83 3.39 -691.97 -2.35 -36.18 16 15 C -0.24 -14.15 10.27 84.03 0.86 -13.28 16 16 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 17 C -0.07 -4.19 5.49 84.86 0.47 -3.73 16 18 N -0.95 -60.78 10.09 21.65 0.22 -60.56 16 19 Si 0.98 47.58 29.55 68.60 2.03 49.61 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 C 0.13 5.51 6.84 86.73 0.59 6.11 16 24 C -0.09 -3.08 3.20 -9.60 -0.03 -3.11 16 25 H 0.10 2.79 8.00 -2.39 -0.02 2.77 16 26 C -0.13 -3.27 9.16 71.98 0.66 -2.61 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.02 0.88 7.60 -2.38 -0.02 0.86 16 30 H 0.13 1.80 8.12 -2.39 -0.02 1.78 16 31 H 0.08 2.20 6.73 -2.39 -0.02 2.18 16 32 H 0.21 1.95 8.06 -2.91 -0.02 1.92 16 33 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.16 3.02 7.45 -2.91 -0.02 3.00 16 35 H 0.41 11.23 7.47 -92.71 -0.69 10.54 16 36 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 37 H 0.06 3.87 5.87 -2.38 -0.01 3.86 16 38 H 0.24 15.27 8.31 -92.70 -0.77 14.50 16 39 H 0.03 1.29 7.76 -2.39 -0.02 1.27 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.05 1.28 8.06 -2.39 -0.02 1.26 16 Total: -1.00 -79.56 348.78 3.25 -76.31 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.31 Total: 23.39 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 6.80 Total: 12.39 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -5.82 Total: -134.78 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.06 Total: -26.92 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -79.56 3.25 -76.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080945749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.780 kcal (2) G-P(sol) polarization free energy of solvation -79.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds