Wall clock time and date at job start Tue Mar 31 2020 07:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35531 * 125.67849 * 2 1 4 4 C 1.35457 * 108.86908 * 180.30273 * 3 2 1 5 5 C 1.39836 * 107.86281 * 359.73396 * 4 3 2 6 6 C 1.37653 * 125.67341 * 179.84479 * 2 1 3 7 7 C 1.46678 * 126.23723 * 359.96784 * 6 2 1 8 8 O 1.21699 * 119.99549 * 4.40110 * 7 6 2 9 9 N 1.34773 * 120.00063 * 184.40694 * 7 6 2 10 10 C 1.46495 * 120.00044 * 174.40850 * 9 7 6 11 11 H 1.09002 * 109.47487 * 34.99858 * 10 9 7 12 12 C 1.52998 * 109.47517 * 274.99880 * 10 9 7 13 13 C 1.53001 * 109.47492 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47005 * 60.00288 * 13 12 10 15 15 C 1.53002 * 109.46893 * 299.99645 * 14 13 12 16 16 C 1.52996 * 109.47342 * 154.99709 * 10 9 7 17 17 H 1.09001 * 109.46939 * 60.00419 * 16 10 9 18 18 N 1.46496 * 109.47290 * 299.99920 * 16 10 9 19 19 C 1.36936 * 120.00205 * 154.99525 * 18 16 10 20 20 H 1.08004 * 119.99822 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00124 * 180.02562 * 19 18 16 22 22 N 1.31609 * 120.00130 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99879 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47287 * 60.00184 * 23 21 19 25 25 H 1.48505 * 109.47075 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47357 * 300.00151 * 23 21 19 27 27 H 1.08994 * 109.47114 * 270.88304 * 1 2 3 28 28 H 1.09002 * 109.46973 * 30.88943 * 1 2 3 29 29 H 1.09006 * 109.47450 * 150.88313 * 1 2 3 30 30 H 1.07995 * 125.56705 * 0.02562 * 3 2 1 31 31 H 1.08000 * 126.06647 * 179.69865 * 4 3 2 32 32 H 1.08004 * 126.45330 * 179.97438 * 5 4 3 33 33 H 0.96993 * 119.99876 * 354.40926 * 9 7 6 34 34 H 1.09002 * 109.46924 * 59.99802 * 12 10 9 35 35 H 1.09001 * 109.47248 * 300.00415 * 12 10 9 36 36 H 1.08991 * 109.47285 * 299.99774 * 13 12 10 37 37 H 1.09003 * 109.46894 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.47527 * 59.99662 * 14 13 12 39 39 H 1.08993 * 109.47036 * 180.02562 * 14 13 12 40 40 H 1.08994 * 109.47173 * 179.97438 * 15 14 13 41 41 H 1.08991 * 109.47025 * 300.00286 * 15 14 13 42 42 H 0.97000 * 120.00142 * 335.00068 * 18 16 10 43 43 H 0.97006 * 120.00007 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7092 -0.0068 5 6 3.5779 -0.6889 -0.0050 6 6 2.2678 -1.1182 0.0030 7 6 1.8123 -2.5125 0.0075 8 8 0.6244 -2.7648 -0.0721 9 7 2.7093 -3.5141 0.0998 10 6 2.2500 -4.8993 0.2277 11 1 1.3366 -5.0342 -0.3517 12 6 1.9709 -5.2103 1.6995 13 6 1.4905 -6.6568 1.8330 14 6 2.5715 -7.6037 1.3078 15 6 2.8505 -7.2928 -0.1641 16 6 3.3313 -5.8458 -0.2974 17 1 4.2447 -5.7110 0.2820 18 7 3.5985 -5.5482 -1.7067 19 6 4.8132 -5.8632 -2.2547 20 1 5.5742 -6.3316 -1.6480 21 6 5.0666 -5.5807 -3.5899 22 7 4.1395 -5.0096 -4.3291 23 14 6.7234 -6.0112 -4.3376 24 1 6.9490 -7.4752 -4.2316 25 1 6.7408 -5.6094 -5.7671 26 1 7.7978 -5.2908 -3.6083 27 1 -0.3633 0.0158 1.0275 28 1 -0.3633 0.8819 -0.5276 29 1 -0.3634 -0.8978 -0.5001 30 1 1.9083 2.1235 0.0004 31 1 4.4133 1.3610 -0.0131 32 1 4.4583 -1.3146 -0.0095 33 1 3.6590 -3.3178 0.0816 34 1 1.2004 -4.5360 2.0735 35 1 2.8842 -5.0754 2.2789 36 1 0.5771 -6.7912 1.2538 37 1 1.2912 -6.8781 2.8815 38 1 3.4850 -7.4693 1.8871 39 1 2.2291 -8.6341 1.4025 40 1 3.6209 -7.9670 -0.5381 41 1 1.9371 -7.4272 -0.7433 42 1 2.9150 -5.1278 -2.2517 43 1 4.3167 -4.8118 -5.2621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085136306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:44 Heat of formation + Delta-G solvation = 10.341928 kcal Electronic energy + Delta-G solvation = -23889.688787 eV Core-core repulsion = 20549.274037 eV Total energy + Delta-G solvation = -3340.414750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.18783 -39.31084 -37.54554 -34.05113 -33.88458 -32.58933 -31.12605 -30.01054 -28.59893 -27.41797 -26.39077 -23.71839 -23.10406 -21.35459 -21.05352 -20.27088 -19.83929 -18.99616 -17.70519 -17.01911 -15.84656 -15.61714 -15.43975 -14.83785 -14.31430 -14.14618 -13.89313 -13.60199 -13.55496 -13.23070 -13.13529 -12.91393 -12.65139 -12.30149 -12.21707 -12.07131 -12.04940 -11.86426 -11.05962 -10.89655 -10.82658 -10.73340 -10.54283 -10.31753 -10.17447 -9.74202 -9.61812 -9.55551 -8.89623 -8.62516 -8.59809 -8.04091 -6.96367 -5.75169 -3.05072 1.69828 2.81417 2.88557 3.43786 3.48547 3.49794 3.69461 3.73291 4.57686 4.87492 4.99604 5.05611 5.08983 5.17718 5.24739 5.33415 5.51379 5.53622 5.55492 5.55971 5.70960 5.73585 5.83327 5.91126 5.97246 5.99048 6.12809 6.20451 6.31254 6.33083 6.47083 6.49651 6.53385 6.59961 6.84841 6.88352 6.94552 7.11082 7.12808 7.32077 7.69212 7.96482 8.41689 8.59653 9.53427 10.09944 10.45095 11.46646 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.005810 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.076134 B = 4818.323655 C = 6669.723835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.413 5.413 3 C 0.005 3.995 4 C -0.208 4.208 5 C -0.138 4.138 6 C -0.044 4.044 7 C 0.590 3.410 8 O -0.562 6.562 9 N -0.693 5.693 10 C 0.143 3.857 11 H 0.086 0.914 12 C -0.124 4.124 13 C -0.113 4.113 14 C -0.119 4.119 15 C -0.133 4.133 16 C 0.173 3.827 17 H 0.051 0.949 18 N -0.721 5.721 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.010 4.010 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.286 1.286 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.165 0.835 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.406 0.594 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.385 0.615 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.048 7.424 13.091 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.086 5.086 3 C -0.130 4.130 4 C -0.232 4.232 5 C -0.165 4.165 6 C -0.158 4.158 7 C 0.378 3.622 8 O -0.443 6.443 9 N -0.342 5.342 10 C 0.037 3.963 11 H 0.104 0.896 12 C -0.163 4.163 13 C -0.151 4.151 14 C -0.158 4.158 15 C -0.174 4.174 16 C 0.062 3.938 17 H 0.069 0.931 18 N -0.362 5.362 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.206 4.206 22 N -0.576 5.576 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.182 0.818 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.241 0.759 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.106 7.169 12.969 16.027 hybrid contribution 1.173 0.106 -0.803 1.425 sum -4.934 7.275 12.166 15.009 Atomic orbital electron populations 1.22263 0.76434 1.05402 1.03460 1.43812 1.06658 1.05025 1.53112 1.21938 0.90801 0.91354 1.08943 1.20796 0.95875 0.95094 1.11477 1.21418 0.94735 0.95441 1.04860 1.20173 0.90407 0.87781 1.17415 1.16934 0.85699 0.83500 0.76104 1.90719 1.16464 1.84926 1.52193 1.45542 1.09872 1.05955 1.72814 1.21324 0.99429 0.79983 0.95529 0.89618 1.21881 1.01157 0.96715 0.96522 1.21468 0.98915 0.94385 1.00365 1.21582 0.98358 0.98314 0.97504 1.22231 1.01573 0.99389 0.94189 1.20470 0.94388 0.91170 0.87725 0.93108 1.42402 1.15829 1.72841 1.05088 1.19149 0.91346 1.33375 0.93428 0.91250 1.24731 0.97788 1.01465 0.96637 1.69662 1.33084 1.47523 1.07366 0.86312 0.83834 0.77979 0.78276 1.21347 1.21797 1.21285 0.91023 0.90279 0.87512 0.81775 0.84221 0.83733 0.75896 0.92134 0.91917 0.91982 0.92400 0.92349 0.92692 0.91568 0.92452 0.78110 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 10.65 59.85 0.64 1.39 16 2 N -0.41 -5.83 3.16 -120.23 -0.38 -6.21 16 3 C 0.00 0.06 11.38 -16.91 -0.19 -0.14 16 4 C -0.21 -2.70 10.81 -39.98 -0.43 -3.13 16 5 C -0.14 -2.07 10.36 -39.12 -0.41 -2.48 16 6 C -0.04 -0.73 6.89 -81.98 -0.56 -1.29 16 7 C 0.59 10.70 7.74 -12.85 -0.10 10.60 16 8 O -0.56 -11.25 14.26 5.19 0.07 -11.17 16 9 N -0.69 -11.96 4.89 -55.12 -0.27 -12.22 16 10 C 0.14 2.46 2.02 -67.94 -0.14 2.32 16 11 H 0.09 1.69 7.50 -51.93 -0.39 1.30 16 12 C -0.12 -1.77 5.49 -26.73 -0.15 -1.92 16 13 C -0.11 -1.47 5.92 -26.73 -0.16 -1.63 16 14 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 15 C -0.13 -2.30 5.50 -26.70 -0.15 -2.45 16 16 C 0.17 3.28 2.30 -67.91 -0.16 3.12 16 17 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 18 N -0.72 -17.37 4.95 -53.40 -0.26 -17.64 16 19 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 20 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 21 C -0.01 -0.27 5.50 -17.44 -0.10 -0.37 16 22 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 23 Si 0.90 22.10 29.55 -169.99 -5.02 17.08 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.11 1.49 6.19 -51.93 -0.32 1.17 16 30 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 31 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.14 2.01 7.45 -52.48 -0.39 1.62 16 33 H 0.41 6.74 7.50 -40.82 -0.31 6.44 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.38 10.32 7.80 -40.82 -0.32 10.01 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 349.81 15.07 5.27 5.27 Total: -1.00 -31.70 349.81 -8.84 -40.54 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -6.77 Total: 15.90 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.21 Total: -4.36 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -0.19 Total: -63.26 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.70 -8.84 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085136306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.883 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds