Wall clock time and date at job start Tue Mar 31 2020 07:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35531 * 125.67849 * 2 1 4 4 C 1.35457 * 108.86908 * 180.30273 * 3 2 1 5 5 C 1.39836 * 107.86281 * 359.73396 * 4 3 2 6 6 C 1.37653 * 125.67341 * 179.84479 * 2 1 3 7 7 C 1.46678 * 126.23723 * 359.96784 * 6 2 1 8 8 O 1.21699 * 119.99549 * 4.40110 * 7 6 2 9 9 N 1.34773 * 120.00063 * 184.40694 * 7 6 2 10 10 C 1.46495 * 120.00044 * 174.40850 * 9 7 6 11 11 H 1.09002 * 109.47487 * 34.99858 * 10 9 7 12 12 C 1.52998 * 109.47517 * 274.99880 * 10 9 7 13 13 C 1.53001 * 109.47492 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47005 * 60.00288 * 13 12 10 15 15 C 1.53002 * 109.46893 * 299.99645 * 14 13 12 16 16 C 1.52996 * 109.47342 * 154.99709 * 10 9 7 17 17 H 1.09001 * 109.46939 * 60.00419 * 16 10 9 18 18 N 1.46496 * 109.47290 * 299.99920 * 16 10 9 19 19 C 1.36936 * 120.00205 * 154.99525 * 18 16 10 20 20 H 1.08004 * 119.99822 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00124 * 180.02562 * 19 18 16 22 22 N 1.31609 * 120.00130 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99879 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47287 * 60.00184 * 23 21 19 25 25 H 1.48505 * 109.47075 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47357 * 300.00151 * 23 21 19 27 27 H 1.08994 * 109.47114 * 270.88304 * 1 2 3 28 28 H 1.09002 * 109.46973 * 30.88943 * 1 2 3 29 29 H 1.09006 * 109.47450 * 150.88313 * 1 2 3 30 30 H 1.07995 * 125.56705 * 0.02562 * 3 2 1 31 31 H 1.08000 * 126.06647 * 179.69865 * 4 3 2 32 32 H 1.08004 * 126.45330 * 179.97438 * 5 4 3 33 33 H 0.96993 * 119.99876 * 354.40926 * 9 7 6 34 34 H 1.09002 * 109.46924 * 59.99802 * 12 10 9 35 35 H 1.09001 * 109.47248 * 300.00415 * 12 10 9 36 36 H 1.08991 * 109.47285 * 299.99774 * 13 12 10 37 37 H 1.09003 * 109.46894 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.47527 * 59.99662 * 14 13 12 39 39 H 1.08993 * 109.47036 * 180.02562 * 14 13 12 40 40 H 1.08994 * 109.47173 * 179.97438 * 15 14 13 41 41 H 1.08991 * 109.47025 * 300.00286 * 15 14 13 42 42 H 0.97000 * 120.00142 * 335.00068 * 18 16 10 43 43 H 0.97006 * 120.00007 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7092 -0.0068 5 6 3.5779 -0.6889 -0.0050 6 6 2.2678 -1.1182 0.0030 7 6 1.8123 -2.5125 0.0075 8 8 0.6244 -2.7648 -0.0721 9 7 2.7093 -3.5141 0.0998 10 6 2.2500 -4.8993 0.2277 11 1 1.3366 -5.0342 -0.3517 12 6 1.9709 -5.2103 1.6995 13 6 1.4905 -6.6568 1.8330 14 6 2.5715 -7.6037 1.3078 15 6 2.8505 -7.2928 -0.1641 16 6 3.3313 -5.8458 -0.2974 17 1 4.2447 -5.7110 0.2820 18 7 3.5985 -5.5482 -1.7067 19 6 4.8132 -5.8632 -2.2547 20 1 5.5742 -6.3316 -1.6480 21 6 5.0666 -5.5807 -3.5899 22 7 4.1395 -5.0096 -4.3291 23 14 6.7234 -6.0112 -4.3376 24 1 6.9490 -7.4752 -4.2316 25 1 6.7408 -5.6094 -5.7671 26 1 7.7978 -5.2908 -3.6083 27 1 -0.3633 0.0158 1.0275 28 1 -0.3633 0.8819 -0.5276 29 1 -0.3634 -0.8978 -0.5001 30 1 1.9083 2.1235 0.0004 31 1 4.4133 1.3610 -0.0131 32 1 4.4583 -1.3146 -0.0095 33 1 3.6590 -3.3178 0.0816 34 1 1.2004 -4.5360 2.0735 35 1 2.8842 -5.0754 2.2789 36 1 0.5771 -6.7912 1.2538 37 1 1.2912 -6.8781 2.8815 38 1 3.4850 -7.4693 1.8871 39 1 2.2291 -8.6341 1.4025 40 1 3.6209 -7.9670 -0.5381 41 1 1.9371 -7.4272 -0.7433 42 1 2.9150 -5.1278 -2.2517 43 1 4.3167 -4.8118 -5.2621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085136306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:44 Heat of formation + Delta-G solvation = -9.822446 kcal Electronic energy + Delta-G solvation = -23890.563180 eV Core-core repulsion = 20549.274037 eV Total energy + Delta-G solvation = -3341.289143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.28856 -40.67418 -38.95094 -35.81036 -35.28816 -33.65193 -32.98794 -31.24114 -29.97843 -28.90718 -27.35990 -25.64483 -24.35885 -22.73491 -22.43432 -21.31556 -21.17232 -20.27660 -19.20881 -18.67505 -17.27686 -16.97489 -16.58992 -16.42305 -15.68402 -15.63222 -15.21071 -15.14122 -14.81223 -14.62586 -14.33195 -14.12166 -14.07563 -13.61567 -13.55312 -13.23347 -13.14913 -12.91765 -12.87121 -12.76528 -12.26411 -12.17045 -12.06355 -12.01059 -11.63710 -11.43539 -11.13237 -11.02696 -10.79187 -10.01645 -9.66445 -9.14031 -8.98721 -7.89935 -5.19138 0.51105 1.48788 1.51234 1.57131 1.74134 1.85476 2.40327 2.48547 2.58161 3.43210 3.67153 3.77362 3.88216 3.99400 4.13940 4.21088 4.26245 4.31960 4.38472 4.43537 4.48687 4.50257 4.57169 4.59502 4.69636 4.74460 4.95626 5.00235 5.15376 5.18005 5.24443 5.28980 5.30187 5.31143 5.46821 5.53340 5.56632 5.66846 5.85222 6.00865 6.29196 6.37092 6.58902 7.21969 7.35863 8.09746 8.34093 9.33058 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.005810 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.076134 B = 4818.323655 C = 6669.723835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.420 5.420 3 C 0.025 3.975 4 C -0.222 4.222 5 C -0.144 4.144 6 C -0.087 4.087 7 C 0.583 3.417 8 O -0.591 6.591 9 N -0.693 5.693 10 C 0.150 3.850 11 H 0.054 0.946 12 C -0.114 4.114 13 C -0.109 4.109 14 C -0.109 4.109 15 C -0.127 4.127 16 C 0.172 3.828 17 H 0.059 0.941 18 N -0.732 5.732 19 C -0.232 4.232 20 H 0.080 0.920 21 C -0.075 4.075 22 N -0.971 5.971 23 Si 0.970 3.030 24 H -0.280 1.280 25 H -0.302 1.302 26 H -0.275 1.275 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.209 0.791 31 H 0.165 0.835 32 H 0.145 0.855 33 H 0.407 0.593 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.040 0.960 42 H 0.367 0.633 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 8.257 15.165 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.093 5.093 3 C -0.111 4.111 4 C -0.245 4.245 5 C -0.171 4.171 6 C -0.200 4.200 7 C 0.373 3.627 8 O -0.475 6.475 9 N -0.341 5.341 10 C 0.045 3.955 11 H 0.072 0.928 12 C -0.153 4.153 13 C -0.147 4.147 14 C -0.148 4.148 15 C -0.168 4.168 16 C 0.063 3.937 17 H 0.077 0.923 18 N -0.370 5.370 19 C -0.364 4.364 20 H 0.098 0.902 21 C -0.267 4.267 22 N -0.622 5.622 23 Si 0.799 3.201 24 H -0.206 1.206 25 H -0.229 1.229 26 H -0.201 1.201 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.094 0.906 30 H 0.226 0.774 31 H 0.182 0.818 32 H 0.163 0.837 33 H 0.243 0.757 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.198 0.802 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.287 7.965 15.110 17.880 hybrid contribution 0.893 -0.094 -1.393 1.657 sum -4.394 7.871 13.717 16.414 Atomic orbital electron populations 1.22365 0.75302 1.05531 1.04463 1.44093 1.07578 1.04899 1.52726 1.22707 0.90301 0.92497 1.05603 1.21172 0.97403 0.94283 1.11676 1.21653 0.94294 0.96896 1.04231 1.20062 0.91539 0.87542 1.20890 1.17299 0.85368 0.84552 0.75503 1.90690 1.17523 1.85537 1.53757 1.45547 1.09892 1.05926 1.72761 1.21206 0.97265 0.79813 0.97229 0.92764 1.21813 1.01800 0.97723 0.93947 1.21474 0.98211 0.92948 1.02101 1.21518 0.99327 0.99569 0.94337 1.22094 1.00146 0.97445 0.97120 1.20691 0.95310 0.92623 0.85055 0.92333 1.42571 1.14701 1.72782 1.06972 1.19558 0.92090 1.31256 0.93484 0.90193 1.25510 1.01155 1.02605 0.97427 1.69846 1.35196 1.49984 1.07141 0.85267 0.80144 0.77931 0.76732 1.20583 1.22893 1.20120 0.89702 0.86767 0.90583 0.77388 0.81774 0.83706 0.75694 0.92611 0.90282 0.92779 0.89311 0.90890 0.90726 0.93068 0.94080 0.80175 0.94398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.41 10.65 127.77 1.36 2.77 16 2 N -0.42 -11.40 3.16 -534.31 -1.69 -13.09 16 3 C 0.02 0.52 11.38 83.48 0.95 1.47 16 4 C -0.22 -5.29 10.81 22.01 0.24 -5.06 16 5 C -0.14 -4.28 10.36 22.57 0.23 -4.05 16 6 C -0.09 -2.91 6.89 40.35 0.28 -2.63 16 7 C 0.58 22.08 7.74 86.45 0.67 22.75 16 8 O -0.59 -24.97 14.26 -4.35 -0.06 -25.03 16 9 N -0.69 -24.79 4.89 -446.52 -2.18 -26.97 16 10 C 0.15 5.31 2.02 44.99 0.09 5.40 16 11 H 0.05 2.27 7.50 -2.39 -0.02 2.25 16 12 C -0.11 -3.14 5.49 30.59 0.17 -2.98 16 13 C -0.11 -2.60 5.92 30.59 0.18 -2.42 16 14 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16 15 C -0.13 -4.38 5.50 30.61 0.17 -4.21 16 16 C 0.17 6.57 2.30 45.01 0.10 6.67 16 17 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 18 N -0.73 -36.30 4.95 -322.86 -1.60 -37.90 16 19 C -0.23 -12.52 9.93 84.03 0.83 -11.68 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 22 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 23 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 2.19 6.19 -2.38 -0.01 2.18 16 30 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 32 H 0.15 4.09 7.45 -2.91 -0.02 4.07 16 33 H 0.41 14.00 7.50 -92.71 -0.70 13.30 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 42 H 0.37 20.69 7.80 -92.71 -0.72 19.97 16 43 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 Total: -1.00 -71.38 349.81 2.29 -69.08 By element: Atomic # 1 Polarization: 46.65 SS G_CDS: -0.41 Total: 46.25 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.92 Total: -0.30 kcal Atomic # 7 Polarization: -132.83 SS G_CDS: -5.19 Total: -138.02 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.06 Total: -25.03 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -71.38 2.29 -69.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085136306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.261 kcal (2) G-P(sol) polarization free energy of solvation -71.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds