Wall clock time and date at job start Tue Mar 31 2020 07:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36443 * 124.84932 * 2 1 4 4 C 1.34494 * 108.85383 * 179.73037 * 3 2 1 5 5 C 1.46683 * 106.33145 * 0.37707 * 4 3 2 6 6 C 1.47263 * 126.94210 * 179.88778 * 5 4 3 7 7 O 1.21625 * 119.99995 * 179.69006 * 6 5 4 8 8 N 1.34774 * 119.99710 * 359.68494 * 6 5 4 9 9 C 1.46504 * 119.99618 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46891 * 35.00590 * 9 8 6 11 11 C 1.52997 * 109.47417 * 275.00242 * 9 8 6 12 12 C 1.53002 * 109.46978 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.46891 * 60.00410 * 12 11 9 14 14 C 1.53000 * 109.47328 * 299.99597 * 13 12 11 15 15 C 1.52997 * 109.47060 * 60.00126 * 14 13 12 16 16 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 17 17 N 1.46500 * 109.47473 * 180.02562 * 15 14 13 18 18 C 1.36930 * 119.99841 * 275.00145 * 17 15 14 19 19 H 1.07999 * 120.00622 * 359.97438 * 18 17 15 20 20 C 1.38817 * 119.99916 * 179.97438 * 18 17 15 21 21 N 1.31622 * 120.00468 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99959 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47451 * 89.99447 * 22 20 18 24 24 H 1.48497 * 109.47471 * 210.00073 * 22 20 18 25 25 H 1.48503 * 109.47044 * 329.99876 * 22 20 18 26 26 C 1.34655 * 124.84657 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47236 * 270.02145 * 1 2 3 28 28 H 1.08998 * 109.47393 * 30.01709 * 1 2 3 29 29 H 1.09000 * 109.47356 * 150.02223 * 1 2 3 30 30 H 1.08003 * 125.57336 * 0.02562 * 3 2 1 31 31 H 1.08002 * 126.83196 * 180.25837 * 4 3 2 32 32 H 0.96997 * 120.00234 * 0.02562 * 8 6 5 33 33 H 1.09002 * 109.47045 * 60.00127 * 11 9 8 34 34 H 1.09001 * 109.47375 * 300.00052 * 11 9 8 35 35 H 1.08992 * 109.47056 * 300.00064 * 12 11 9 36 36 H 1.09004 * 109.47006 * 180.02562 * 12 11 9 37 37 H 1.09004 * 109.47368 * 179.97438 * 13 12 11 38 38 H 1.09001 * 109.47372 * 59.99964 * 13 12 11 39 39 H 1.09002 * 109.47398 * 180.02562 * 14 13 12 40 40 H 1.09001 * 109.47194 * 300.00476 * 14 13 12 41 41 H 0.97001 * 119.99547 * 95.00125 * 17 15 14 42 42 H 0.96993 * 120.00314 * 180.02562 * 21 20 18 43 43 H 1.07992 * 125.80696 * 0.04046 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7491 0.0060 5 6 3.5462 -0.7177 0.0007 6 6 4.7284 -1.5958 0.0019 7 8 4.5884 -2.8040 0.0027 8 7 5.9653 -1.0606 0.0020 9 6 7.1413 -1.9342 0.0038 10 1 6.9314 -2.8273 -0.5848 11 6 7.4749 -2.3376 1.4414 12 6 8.7028 -3.2505 1.4431 13 6 9.8923 -2.5063 0.8332 14 6 9.5588 -2.1028 -0.6044 15 6 8.3310 -1.1900 -0.6062 16 1 8.5412 -0.2970 -0.0177 17 7 8.0112 -0.8042 -1.9828 18 6 8.6439 0.2650 -2.5587 19 1 9.3783 0.8241 -1.9980 20 6 8.3413 0.6303 -3.8633 21 7 8.9490 1.6583 -4.4167 22 14 7.0704 -0.3362 -4.8330 23 1 5.7267 0.2582 -4.6181 24 1 7.4081 -0.2871 -6.2782 25 1 7.0662 -1.7483 -4.3734 26 6 2.2344 -1.1051 0.0005 27 1 -0.3634 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3634 -0.8902 -0.5135 30 1 1.8828 2.1373 0.0004 31 1 4.3981 1.4017 0.0115 32 1 6.0768 -0.0971 0.0017 33 1 6.6276 -2.8682 1.8758 34 1 7.6849 -1.4445 2.0300 35 1 8.4924 -4.1435 0.8547 36 1 8.9401 -3.5383 2.4673 37 1 10.7672 -3.1564 0.8348 38 1 10.1027 -1.6133 1.4217 39 1 10.4065 -1.5730 -1.0391 40 1 9.3484 -2.9959 -1.1929 41 1 7.3513 -1.3061 -2.4863 42 1 8.7373 1.9138 -5.3281 43 1 1.8767 -2.1240 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085169729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:48 Heat of formation + Delta-G solvation = 13.627455 kcal Electronic energy + Delta-G solvation = -23691.826421 eV Core-core repulsion = 20351.554143 eV Total energy + Delta-G solvation = -3340.272279 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17014 -39.37619 -37.58218 -34.09421 -33.65395 -32.77459 -31.28815 -29.52076 -29.02818 -28.12902 -26.51957 -23.43362 -23.02550 -21.37777 -20.90309 -20.05606 -19.85531 -19.10459 -17.97682 -17.36418 -15.80665 -15.62145 -15.50029 -14.87422 -14.44435 -14.25656 -14.06157 -13.65355 -13.44446 -13.29944 -13.10694 -13.00310 -12.64244 -12.54861 -12.44325 -12.17713 -12.10908 -11.92259 -11.29763 -10.94649 -10.82290 -10.78394 -10.51959 -10.29443 -10.05335 -9.71423 -9.55118 -9.46612 -8.88529 -8.67034 -8.48505 -8.24154 -7.23475 -5.74803 -3.09607 1.91754 2.48652 2.75709 3.42591 3.48252 3.50454 3.77712 3.90785 4.52050 4.63244 4.85226 4.87426 4.98229 5.01669 5.09881 5.13519 5.26368 5.42848 5.53036 5.54593 5.55287 5.68380 5.76874 5.86960 5.94943 5.96235 5.99958 6.11225 6.16115 6.35580 6.46146 6.49440 6.51591 6.56163 6.77999 6.88722 6.93212 7.00995 7.13603 7.19612 8.01011 8.09280 8.44369 8.75911 9.23347 9.96578 10.16728 11.43380 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.006020 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.347561 B = 4650.331155 C = 6514.847141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.451 5.451 3 C -0.022 4.022 4 C -0.162 4.162 5 C -0.228 4.228 6 C 0.590 3.410 7 O -0.566 6.566 8 N -0.706 5.706 9 C 0.139 3.861 10 H 0.082 0.918 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.119 4.119 14 C -0.133 4.133 15 C 0.178 3.822 16 H 0.059 0.941 17 N -0.746 5.746 18 C -0.240 4.240 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.934 5.934 22 Si 0.880 3.120 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.277 1.277 26 C 0.067 3.933 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.166 0.834 31 H 0.149 0.851 32 H 0.404 0.596 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.362 0.638 42 H 0.259 0.741 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.350 -4.007 13.186 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.127 5.127 3 C -0.148 4.148 4 C -0.186 4.186 5 C -0.238 4.238 6 C 0.378 3.622 7 O -0.446 6.446 8 N -0.355 5.355 9 C 0.033 3.967 10 H 0.100 0.900 11 C -0.162 4.162 12 C -0.152 4.152 13 C -0.157 4.157 14 C -0.174 4.174 15 C 0.068 3.932 16 H 0.077 0.923 17 N -0.388 5.388 18 C -0.370 4.370 19 H 0.108 0.892 20 C -0.188 4.188 21 N -0.582 5.582 22 Si 0.710 3.290 23 H -0.211 1.211 24 H -0.219 1.219 25 H -0.204 1.204 26 C -0.068 4.068 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.183 0.817 31 H 0.166 0.834 32 H 0.239 0.761 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.195 0.805 42 H 0.069 0.931 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -13.662 -4.591 13.111 19.484 hybrid contribution -0.867 -0.072 -0.968 1.302 sum -14.529 -4.663 12.142 19.500 Atomic orbital electron populations 1.22077 0.77191 1.04551 1.03287 1.43580 1.06584 1.05988 1.56557 1.21725 0.90610 0.91156 1.11354 1.22154 0.96331 0.93390 1.06713 1.20446 0.92659 0.93483 1.17244 1.17359 0.82558 0.86905 0.75343 1.90719 1.86796 1.14756 1.52369 1.45736 1.04821 1.10734 1.74175 1.21303 0.85199 0.94112 0.96043 0.89996 1.21862 0.97935 0.99676 0.96732 1.21482 0.94923 0.98508 1.00307 1.21572 0.97150 0.99747 0.97250 1.22182 1.00143 1.00149 0.94906 1.20438 0.90787 0.95250 0.86710 0.92302 1.42789 1.49108 1.36122 1.10808 1.19046 1.17677 1.03948 0.96348 0.89150 1.24613 0.99449 0.97809 0.96903 1.69696 1.45369 1.28525 1.14603 0.86616 0.82317 0.80214 0.79816 1.21085 1.21903 1.20363 1.21726 0.89892 0.91581 1.03582 0.90838 0.89698 0.89759 0.81700 0.83383 0.76093 0.91864 0.91898 0.92056 0.92365 0.92602 0.92205 0.91177 0.92592 0.80497 0.93144 0.81055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 11.03 59.85 0.66 1.08 16 2 N -0.45 -4.83 3.09 -124.52 -0.38 -5.22 16 3 C -0.02 -0.26 11.34 -16.82 -0.19 -0.45 16 4 C -0.16 -2.24 10.56 -37.50 -0.40 -2.63 16 5 C -0.23 -3.60 6.29 -103.35 -0.65 -4.25 16 6 C 0.59 10.70 7.77 -12.59 -0.10 10.60 16 7 O -0.57 -11.67 16.57 5.26 0.09 -11.58 16 8 N -0.71 -12.17 4.91 -54.93 -0.27 -12.44 16 9 C 0.14 2.40 1.97 -67.93 -0.13 2.27 16 10 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 11 C -0.12 -1.79 5.49 -26.73 -0.15 -1.94 16 12 C -0.11 -1.50 5.92 -26.73 -0.16 -1.66 16 13 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 14 C -0.13 -2.31 5.50 -26.73 -0.15 -2.46 16 15 C 0.18 3.37 2.29 -67.93 -0.16 3.21 16 16 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 17 N -0.75 -17.47 4.76 -53.43 -0.25 -17.72 16 18 C -0.24 -6.62 10.41 -15.06 -0.16 -6.77 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 20 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -29.15 13.97 55.49 0.78 -28.37 16 22 Si 0.88 22.79 27.74 -169.99 -4.71 18.08 16 23 H -0.28 -7.38 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.67 7.11 56.52 0.40 -7.26 16 25 H -0.28 -7.00 6.52 56.52 0.37 -6.63 16 26 C 0.07 0.89 11.12 -16.84 -0.19 0.70 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.38 8.13 -51.93 -0.42 -0.04 16 29 H 0.08 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.17 1.35 8.06 -52.48 -0.42 0.93 16 31 H 0.15 1.92 7.70 -52.49 -0.40 1.51 16 32 H 0.40 6.66 7.73 -40.82 -0.32 6.35 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.36 8.81 5.66 -40.82 -0.23 8.58 16 42 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 43 H 0.17 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 351.66 15.07 5.30 5.30 Total: -1.00 -34.34 351.66 -8.33 -42.66 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -6.85 Total: 13.24 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -2.01 Total: -3.95 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -0.13 Total: -63.75 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.71 Total: 18.08 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.34 -8.33 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085169729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.289 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds