Wall clock time and date at job start Tue Mar 31 2020 07:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36443 * 124.84932 * 2 1 4 4 C 1.34494 * 108.85383 * 179.73037 * 3 2 1 5 5 C 1.46683 * 106.33145 * 0.37707 * 4 3 2 6 6 C 1.47263 * 126.94210 * 179.88778 * 5 4 3 7 7 O 1.21625 * 119.99995 * 179.69006 * 6 5 4 8 8 N 1.34774 * 119.99710 * 359.68494 * 6 5 4 9 9 C 1.46504 * 119.99618 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46891 * 35.00590 * 9 8 6 11 11 C 1.52997 * 109.47417 * 275.00242 * 9 8 6 12 12 C 1.53002 * 109.46978 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.46891 * 60.00410 * 12 11 9 14 14 C 1.53000 * 109.47328 * 299.99597 * 13 12 11 15 15 C 1.52997 * 109.47060 * 60.00126 * 14 13 12 16 16 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 17 17 N 1.46500 * 109.47473 * 180.02562 * 15 14 13 18 18 C 1.36930 * 119.99841 * 275.00145 * 17 15 14 19 19 H 1.07999 * 120.00622 * 359.97438 * 18 17 15 20 20 C 1.38817 * 119.99916 * 179.97438 * 18 17 15 21 21 N 1.31622 * 120.00468 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99959 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47451 * 89.99447 * 22 20 18 24 24 H 1.48497 * 109.47471 * 210.00073 * 22 20 18 25 25 H 1.48503 * 109.47044 * 329.99876 * 22 20 18 26 26 C 1.34655 * 124.84657 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47236 * 270.02145 * 1 2 3 28 28 H 1.08998 * 109.47393 * 30.01709 * 1 2 3 29 29 H 1.09000 * 109.47356 * 150.02223 * 1 2 3 30 30 H 1.08003 * 125.57336 * 0.02562 * 3 2 1 31 31 H 1.08002 * 126.83196 * 180.25837 * 4 3 2 32 32 H 0.96997 * 120.00234 * 0.02562 * 8 6 5 33 33 H 1.09002 * 109.47045 * 60.00127 * 11 9 8 34 34 H 1.09001 * 109.47375 * 300.00052 * 11 9 8 35 35 H 1.08992 * 109.47056 * 300.00064 * 12 11 9 36 36 H 1.09004 * 109.47006 * 180.02562 * 12 11 9 37 37 H 1.09004 * 109.47368 * 179.97438 * 13 12 11 38 38 H 1.09001 * 109.47372 * 59.99964 * 13 12 11 39 39 H 1.09002 * 109.47398 * 180.02562 * 14 13 12 40 40 H 1.09001 * 109.47194 * 300.00476 * 14 13 12 41 41 H 0.97001 * 119.99547 * 95.00125 * 17 15 14 42 42 H 0.96993 * 120.00314 * 180.02562 * 21 20 18 43 43 H 1.07992 * 125.80696 * 0.04046 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7491 0.0060 5 6 3.5462 -0.7177 0.0007 6 6 4.7284 -1.5958 0.0019 7 8 4.5884 -2.8040 0.0027 8 7 5.9653 -1.0606 0.0020 9 6 7.1413 -1.9342 0.0038 10 1 6.9314 -2.8273 -0.5848 11 6 7.4749 -2.3376 1.4414 12 6 8.7028 -3.2505 1.4431 13 6 9.8923 -2.5063 0.8332 14 6 9.5588 -2.1028 -0.6044 15 6 8.3310 -1.1900 -0.6062 16 1 8.5412 -0.2970 -0.0177 17 7 8.0112 -0.8042 -1.9828 18 6 8.6439 0.2650 -2.5587 19 1 9.3783 0.8241 -1.9980 20 6 8.3413 0.6303 -3.8633 21 7 8.9490 1.6583 -4.4167 22 14 7.0704 -0.3362 -4.8330 23 1 5.7267 0.2582 -4.6181 24 1 7.4081 -0.2871 -6.2782 25 1 7.0662 -1.7483 -4.3734 26 6 2.2344 -1.1051 0.0005 27 1 -0.3634 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3634 -0.8902 -0.5135 30 1 1.8828 2.1373 0.0004 31 1 4.3981 1.4017 0.0115 32 1 6.0768 -0.0971 0.0017 33 1 6.6276 -2.8682 1.8758 34 1 7.6849 -1.4445 2.0300 35 1 8.4924 -4.1435 0.8547 36 1 8.9401 -3.5383 2.4673 37 1 10.7672 -3.1564 0.8348 38 1 10.1027 -1.6133 1.4217 39 1 10.4065 -1.5730 -1.0391 40 1 9.3484 -2.9959 -1.1929 41 1 7.3513 -1.3061 -2.4863 42 1 8.7373 1.9138 -5.3281 43 1 1.8767 -2.1240 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085169729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:47 Heat of formation + Delta-G solvation = -9.025561 kcal Electronic energy + Delta-G solvation = -23692.808730 eV Core-core repulsion = 20351.554143 eV Total energy + Delta-G solvation = -3341.254587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.12968 -40.74650 -38.99617 -35.92600 -35.05301 -33.63298 -33.30691 -30.78071 -30.14411 -29.62138 -27.34138 -25.33538 -24.21358 -22.66795 -22.42633 -21.20279 -20.98557 -20.40180 -19.65722 -18.72712 -17.22252 -16.91951 -16.60913 -16.31781 -15.91364 -15.62368 -15.16912 -15.00231 -14.82627 -14.68195 -14.54574 -14.34846 -13.92745 -13.69957 -13.61706 -13.28368 -13.08405 -13.04385 -12.95649 -12.91776 -12.39759 -12.15458 -12.07215 -11.83007 -11.70444 -11.46824 -11.14296 -11.03785 -10.78207 -9.98520 -9.49721 -9.30328 -9.27276 -8.01737 -5.32701 0.79245 1.34291 1.36315 1.41733 1.51975 1.93969 2.46104 2.50034 2.63068 3.30366 3.47865 3.76199 3.97150 4.02409 4.07270 4.14033 4.20066 4.26933 4.32607 4.42802 4.47357 4.50460 4.58178 4.60977 4.68926 4.73779 4.95692 5.00870 5.02795 5.10879 5.20151 5.24377 5.29368 5.31513 5.47887 5.56797 5.69968 5.76613 5.79518 6.07096 6.22728 6.36272 6.72892 7.07510 7.38623 7.84279 8.02791 9.19751 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.006020 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.347561 B = 4650.331155 C = 6514.847141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.443 5.443 3 C -0.009 4.009 4 C -0.190 4.190 5 C -0.270 4.270 6 C 0.585 3.415 7 O -0.600 6.600 8 N -0.706 5.706 9 C 0.146 3.854 10 H 0.059 0.941 11 C -0.114 4.114 12 C -0.109 4.109 13 C -0.110 4.110 14 C -0.129 4.129 15 C 0.176 3.824 16 H 0.059 0.941 17 N -0.749 5.749 18 C -0.215 4.215 19 H 0.067 0.933 20 C -0.052 4.052 21 N -0.979 5.979 22 Si 0.940 3.060 23 H -0.283 1.283 24 H -0.296 1.296 25 H -0.269 1.269 26 C 0.069 3.931 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.201 0.799 31 H 0.146 0.854 32 H 0.406 0.594 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.358 0.642 42 H 0.256 0.744 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.199 -4.503 14.700 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.117 5.117 3 C -0.136 4.136 4 C -0.214 4.214 5 C -0.280 4.280 6 C 0.375 3.625 7 O -0.483 6.483 8 N -0.354 5.354 9 C 0.040 3.960 10 H 0.077 0.923 11 C -0.153 4.153 12 C -0.147 4.147 13 C -0.148 4.148 14 C -0.169 4.169 15 C 0.068 3.932 16 H 0.077 0.923 17 N -0.391 5.391 18 C -0.346 4.346 19 H 0.085 0.915 20 C -0.244 4.244 21 N -0.630 5.630 22 Si 0.769 3.231 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.195 1.195 26 C -0.068 4.068 27 H 0.110 0.890 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.218 0.782 31 H 0.164 0.836 32 H 0.242 0.758 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.191 0.809 42 H 0.065 0.935 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -15.529 -5.102 14.674 21.966 hybrid contribution -0.339 0.116 -1.351 1.398 sum -15.868 -4.986 13.323 21.311 Atomic orbital electron populations 1.22461 0.74027 1.06267 1.05061 1.43921 1.08436 1.04971 1.54418 1.22233 0.89853 0.92674 1.08790 1.22274 0.97786 0.92593 1.08744 1.20473 0.92773 0.94298 1.20439 1.17782 0.83296 0.86856 0.74551 1.90678 1.87278 1.16149 1.54244 1.45760 1.04838 1.10775 1.74044 1.21204 0.84424 0.92856 0.97512 0.92255 1.21801 0.98554 1.00493 0.94494 1.21478 0.93592 0.97731 1.01923 1.21513 0.98212 1.00672 0.94412 1.22064 0.98174 0.99060 0.97630 1.20652 0.92359 0.95845 0.84351 0.92294 1.42829 1.48690 1.35101 1.12474 1.19015 1.15946 1.03792 0.95853 0.91465 1.25213 1.01870 0.99124 0.98177 1.69834 1.47624 1.30632 1.14931 0.85641 0.79976 0.79288 0.78161 1.20989 1.22231 1.19512 1.21909 0.89539 0.92811 1.02552 0.88992 0.87631 0.88543 0.78226 0.83619 0.75846 0.92390 0.90627 0.92424 0.89458 0.90598 0.91251 0.93235 0.93241 0.80930 0.93475 0.80039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 11.03 127.77 1.41 1.92 16 2 N -0.44 -8.34 3.09 -547.88 -1.69 -10.03 16 3 C -0.01 -0.17 11.34 83.12 0.94 0.77 16 4 C -0.19 -5.15 10.56 23.62 0.25 -4.90 16 5 C -0.27 -8.48 6.29 -19.04 -0.12 -8.60 16 6 C 0.58 21.57 7.77 86.62 0.67 22.25 16 7 O -0.60 -25.24 16.57 -4.11 -0.07 -25.31 16 8 N -0.71 -24.67 4.91 -445.94 -2.19 -26.85 16 9 C 0.15 5.03 1.97 44.99 0.09 5.12 16 10 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 11 C -0.11 -3.18 5.49 30.59 0.17 -3.01 16 12 C -0.11 -2.60 5.92 30.59 0.18 -2.42 16 13 C -0.11 -2.79 5.92 30.59 0.18 -2.60 16 14 C -0.13 -4.41 5.50 30.59 0.17 -4.24 16 15 C 0.18 6.67 2.29 44.99 0.10 6.77 16 16 H 0.06 2.25 8.08 -2.39 -0.02 2.23 16 17 N -0.75 -35.43 4.76 -322.94 -1.54 -36.96 16 18 C -0.22 -12.06 10.41 84.04 0.87 -11.19 16 19 H 0.07 4.05 8.06 -2.91 -0.02 4.03 16 20 C -0.05 -3.08 5.50 84.86 0.47 -2.62 16 21 N -0.98 -62.52 13.97 21.65 0.30 -62.22 16 22 Si 0.94 47.92 27.74 68.60 1.90 49.82 16 23 H -0.28 -14.29 7.11 99.48 0.71 -13.59 16 24 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 25 H -0.27 -13.20 6.52 99.48 0.65 -12.55 16 26 C 0.07 1.75 11.12 83.92 0.93 2.69 16 27 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.11 0.49 8.13 -2.39 -0.02 0.47 16 29 H 0.10 0.61 8.13 -2.39 -0.02 0.59 16 30 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.15 3.81 7.70 -2.91 -0.02 3.79 16 32 H 0.41 13.67 7.73 -92.71 -0.72 12.96 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.36 17.52 5.66 -92.71 -0.52 16.99 16 42 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 43 H 0.18 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -76.05 351.66 2.75 -73.30 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: -0.29 Total: 38.31 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 6.32 Total: -0.06 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -5.11 Total: -136.07 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.07 Total: -25.31 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.90 Total: 49.82 kcal Total: -76.05 2.75 -73.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085169729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.278 kcal (2) G-P(sol) polarization free energy of solvation -76.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds