Wall clock time and date at job start Tue Mar 31 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46493 * 109.47005 * 2 1 4 4 C 1.35543 * 125.67927 * 264.68682 * 3 2 1 5 5 C 1.35449 * 108.86879 * 180.30271 * 4 3 2 6 6 C 1.39832 * 107.87175 * 359.73271 * 5 4 3 7 7 C 1.37652 * 125.67946 * 84.53116 * 3 2 1 8 8 C 1.46680 * 126.23317 * 359.96607 * 7 3 2 9 9 O 1.21696 * 119.99705 * 3.29926 * 8 7 3 10 10 N 1.34769 * 120.00154 * 183.30609 * 8 7 3 11 11 C 1.46499 * 120.00142 * 4.14570 * 10 8 7 12 12 C 1.46506 * 119.99882 * 184.14866 * 10 8 7 13 13 C 1.53001 * 109.46885 * 276.51233 * 12 10 8 14 14 H 1.09002 * 112.96350 * 49.63761 * 13 12 10 15 15 C 1.53951 * 113.76599 * 181.30610 * 13 12 10 16 16 C 1.53947 * 86.28561 * 137.91158 * 15 13 12 17 17 N 1.47581 * 113.77219 * 277.95333 * 13 12 10 18 18 C 1.36933 * 134.49391 * 41.06793 * 17 13 12 19 19 H 1.07998 * 120.00014 * 6.85795 * 18 17 13 20 20 C 1.38806 * 120.00240 * 186.85933 * 18 17 13 21 21 N 1.31624 * 119.99978 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00213 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47090 * 90.00299 * 22 20 18 24 24 H 1.48505 * 109.47214 * 209.99730 * 22 20 18 25 25 H 1.48493 * 109.47169 * 330.00165 * 22 20 18 26 26 H 1.08994 * 109.47136 * 304.99661 * 1 2 3 27 27 H 1.08997 * 109.46647 * 64.99692 * 1 2 3 28 28 H 1.09000 * 109.46898 * 184.99702 * 1 2 3 29 29 H 1.09000 * 109.46930 * 240.00040 * 2 1 3 30 30 H 1.08998 * 109.46630 * 120.00019 * 2 1 3 31 31 H 1.07993 * 125.56493 * 0.02562 * 4 3 2 32 32 H 1.08001 * 126.06700 * 179.69086 * 5 4 3 33 33 H 1.07995 * 126.46422 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47065 * 174.31936 * 11 10 8 35 35 H 1.09003 * 109.47193 * 294.31821 * 11 10 8 36 36 H 1.09006 * 109.47344 * 54.31898 * 11 10 8 37 37 H 1.09006 * 109.46652 * 156.51822 * 12 10 8 38 38 H 1.08990 * 109.47212 * 36.51720 * 12 10 8 39 39 H 1.08996 * 113.74199 * 252.25611 * 15 13 12 40 40 H 1.08998 * 113.74191 * 23.46567 * 15 13 12 41 41 H 1.09004 * 113.76972 * 90.69776 * 16 15 13 42 42 H 1.08999 * 113.77060 * 221.98001 * 16 15 13 43 43 H 0.97000 * 119.99995 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3780 2.0925 -1.0963 5 6 2.7823 3.3248 -0.7056 6 6 2.6672 3.3930 0.6863 7 6 2.1855 2.1736 1.1131 8 6 1.9078 1.7888 2.5010 9 8 1.5451 0.6558 2.7572 10 7 2.0541 2.6900 3.4923 11 6 2.4021 4.0773 3.1756 12 6 1.8651 2.2822 4.8867 13 6 0.3745 2.3156 5.2303 14 1 -0.2423 1.7932 4.4990 15 6 0.0654 1.9331 6.6891 16 6 -0.9413 3.0977 6.6759 17 7 -0.1256 3.6597 5.5787 18 6 0.0834 4.9194 5.0843 19 1 0.6608 5.0564 4.1820 20 6 -0.4468 6.0203 5.7429 21 7 -1.1500 5.8534 6.8429 22 14 -0.1623 7.7387 5.0680 23 1 -1.2557 8.0878 4.1259 24 1 -0.1439 8.7137 6.1881 25 1 1.1389 7.7808 4.3537 26 1 -0.3633 0.5894 0.8418 27 1 -0.3632 0.4344 -0.9314 28 1 -0.3633 -1.0238 0.0895 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.3512 1.7337 -2.1145 32 1 3.1323 4.1144 -1.3540 33 1 2.9095 4.2410 1.3096 34 1 2.3776 4.6751 4.0867 35 1 3.4031 4.1117 2.7454 36 1 1.6847 4.4775 2.4590 37 1 2.4044 2.9667 5.5416 38 1 2.2472 1.2708 5.0244 39 1 -0.3990 0.9529 6.7967 40 1 0.9037 2.0832 7.3692 41 1 -1.9460 2.8066 6.3694 42 1 -0.9314 3.6973 7.5861 43 1 -1.5202 6.6227 7.3033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085973272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:25 Heat of formation + Delta-G solvation = 94.505532 kcal Electronic energy + Delta-G solvation = -24313.306821 eV Core-core repulsion = 20976.541679 eV Total energy + Delta-G solvation = -3336.765142 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.36328 -39.08952 -37.53981 -35.35292 -33.83744 -32.21496 -30.08641 -29.27611 -28.09514 -27.38756 -26.37429 -23.50697 -23.26947 -22.92183 -21.04441 -20.45504 -19.09465 -18.76699 -17.07243 -16.65748 -15.96716 -15.50569 -15.34343 -14.84314 -14.64211 -14.25250 -13.98418 -13.69467 -13.55746 -13.22058 -12.81598 -12.75594 -12.60321 -12.35505 -12.18486 -11.94522 -11.56243 -11.33768 -11.21554 -11.07092 -10.93213 -10.85449 -10.66155 -10.46550 -9.96412 -9.65279 -9.46349 -9.32912 -8.71287 -8.65647 -8.24316 -8.01057 -6.78271 -5.70858 -3.03734 1.67706 2.73376 2.86852 3.38371 3.42507 3.46065 3.54360 3.67638 4.46697 4.67414 4.79443 5.00574 5.03369 5.20986 5.24682 5.42391 5.45191 5.47561 5.61423 5.65337 5.72360 5.75769 5.81045 5.94027 6.02130 6.10375 6.13330 6.17114 6.22347 6.30371 6.34827 6.52211 6.66238 6.78050 6.87916 7.05205 7.11172 7.31802 7.33889 7.52451 7.66052 7.79062 8.05487 8.51513 9.08795 9.76969 10.70188 11.45338 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016715 B = 0.005365 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.748943 B = 5217.969925 C = 6234.741696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.410 5.410 4 C 0.006 3.994 5 C -0.212 4.212 6 C -0.163 4.163 7 C -0.041 4.041 8 C 0.582 3.418 9 O -0.558 6.558 10 N -0.585 5.585 11 C 0.066 3.934 12 C 0.123 3.877 13 C 0.130 3.870 14 H 0.047 0.953 15 C -0.158 4.158 16 C 0.152 3.848 17 N -0.603 5.603 18 C -0.223 4.223 19 H 0.087 0.913 20 C -0.009 4.009 21 N -0.919 5.919 22 Si 0.903 3.097 23 H -0.291 1.291 24 H -0.291 1.291 25 H -0.279 1.279 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.163 0.837 32 H 0.139 0.861 33 H 0.165 0.835 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.020 0.980 42 H 0.079 0.921 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.071 -8.745 -12.195 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.084 5.084 4 C -0.129 4.129 5 C -0.236 4.236 6 C -0.189 4.189 7 C -0.154 4.154 8 C 0.371 3.629 9 O -0.439 6.439 10 N -0.315 5.315 11 C -0.076 4.076 12 C 0.000 4.000 13 C 0.022 3.978 14 H 0.065 0.935 15 C -0.197 4.197 16 C 0.027 3.973 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.104 0.896 20 C -0.206 4.206 21 N -0.566 5.566 22 Si 0.733 3.267 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.205 1.205 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.180 0.820 32 H 0.156 0.844 33 H 0.182 0.818 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.038 0.962 42 H 0.097 0.903 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.723 -9.344 -11.997 17.055 hybrid contribution -0.173 1.146 -0.643 1.325 sum 7.551 -8.198 -12.640 16.852 Atomic orbital electron populations 1.22058 0.94104 1.03056 1.02746 1.21997 0.95997 0.79798 1.04529 1.44051 1.47376 1.11587 1.05346 1.21935 1.06103 0.93392 0.91466 1.20859 1.09982 0.97351 0.95457 1.22441 1.03662 0.97087 0.95701 1.20145 1.14118 0.93067 0.88060 1.16980 0.77768 0.84725 0.83406 1.90732 1.48724 1.20246 1.84202 1.47373 1.67870 1.09714 1.06506 1.22615 0.99012 0.82305 1.03714 1.21972 0.98273 1.00168 0.79568 1.22600 0.92599 0.87907 0.94683 0.93549 1.23740 1.00912 0.98347 0.96654 1.22321 0.91552 0.89621 0.93852 1.46143 1.50137 0.99832 1.36778 1.19277 1.28515 0.81009 1.06279 0.89581 1.24792 1.00741 0.97487 0.97555 1.69819 1.39267 1.28788 1.18759 0.86263 0.77841 0.84782 0.77776 1.21812 1.21723 1.20483 0.91303 0.92607 0.90869 0.89790 0.87628 0.81985 0.84362 0.81763 0.88438 0.92290 0.91140 0.89593 0.90931 0.93120 0.90722 0.96233 0.90269 0.93837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 10.24 37.16 0.38 -1.52 16 2 C 0.10 1.15 6.16 -4.04 -0.02 1.12 16 3 N -0.41 -5.66 2.76 -112.87 -0.31 -5.97 16 4 C 0.01 0.07 11.37 -16.91 -0.19 -0.12 16 5 C -0.21 -2.64 10.81 -39.98 -0.43 -3.07 16 6 C -0.16 -2.34 8.80 -39.12 -0.34 -2.69 16 7 C -0.04 -0.65 6.81 -81.98 -0.56 -1.21 16 8 C 0.58 10.59 7.58 -12.86 -0.10 10.49 16 9 O -0.56 -11.02 14.44 5.19 0.07 -10.95 16 10 N -0.58 -10.43 2.89 -183.12 -0.53 -10.96 16 11 C 0.07 1.05 6.82 59.85 0.41 1.46 16 12 C 0.12 2.27 5.16 -4.04 -0.02 2.25 16 13 C 0.13 2.75 4.48 -66.86 -0.30 2.45 16 14 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.16 -3.08 7.86 -25.79 -0.20 -3.29 16 16 C 0.15 3.64 7.70 -2.85 -0.02 3.62 16 17 N -0.60 -15.11 3.58 -169.68 -0.61 -15.72 16 18 C -0.22 -5.92 9.85 -15.06 -0.15 -6.07 16 19 H 0.09 2.12 4.31 -52.49 -0.23 1.89 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -26.97 11.30 55.49 0.63 -26.35 16 22 Si 0.90 21.55 29.55 -169.99 -5.02 16.52 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 30 H 0.11 1.42 6.57 -51.93 -0.34 1.08 16 31 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.17 2.15 4.08 -52.49 -0.21 1.94 16 34 H 0.10 1.70 6.05 -51.93 -0.31 1.39 16 35 H 0.06 0.77 6.32 -51.93 -0.33 0.44 16 36 H 0.07 1.16 6.35 -51.93 -0.33 0.83 16 37 H 0.09 1.57 7.84 -51.93 -0.41 1.16 16 38 H 0.07 1.26 7.69 -51.93 -0.40 0.86 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 2.07 6.89 -51.93 -0.36 1.72 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -32.26 340.52 -8.56 -40.83 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.27 Total: 4.39 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.65 Total: 3.07 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.82 Total: -58.99 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.95 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.26 -8.56 -40.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085973272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.332 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds