Wall clock time and date at job start Tue Mar 31 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46493 * 109.47005 * 2 1 4 4 C 1.35543 * 125.67927 * 264.68682 * 3 2 1 5 5 C 1.35449 * 108.86879 * 180.30271 * 4 3 2 6 6 C 1.39832 * 107.87175 * 359.73271 * 5 4 3 7 7 C 1.37652 * 125.67946 * 84.53116 * 3 2 1 8 8 C 1.46680 * 126.23317 * 359.96607 * 7 3 2 9 9 O 1.21696 * 119.99705 * 3.29926 * 8 7 3 10 10 N 1.34769 * 120.00154 * 183.30609 * 8 7 3 11 11 C 1.46499 * 120.00142 * 4.14570 * 10 8 7 12 12 C 1.46506 * 119.99882 * 184.14866 * 10 8 7 13 13 C 1.53001 * 109.46885 * 276.51233 * 12 10 8 14 14 H 1.09002 * 112.96350 * 49.63761 * 13 12 10 15 15 C 1.53951 * 113.76599 * 181.30610 * 13 12 10 16 16 C 1.53947 * 86.28561 * 137.91158 * 15 13 12 17 17 N 1.47581 * 113.77219 * 277.95333 * 13 12 10 18 18 C 1.36933 * 134.49391 * 41.06793 * 17 13 12 19 19 H 1.07998 * 120.00014 * 6.85795 * 18 17 13 20 20 C 1.38806 * 120.00240 * 186.85933 * 18 17 13 21 21 N 1.31624 * 119.99978 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00213 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47090 * 90.00299 * 22 20 18 24 24 H 1.48505 * 109.47214 * 209.99730 * 22 20 18 25 25 H 1.48493 * 109.47169 * 330.00165 * 22 20 18 26 26 H 1.08994 * 109.47136 * 304.99661 * 1 2 3 27 27 H 1.08997 * 109.46647 * 64.99692 * 1 2 3 28 28 H 1.09000 * 109.46898 * 184.99702 * 1 2 3 29 29 H 1.09000 * 109.46930 * 240.00040 * 2 1 3 30 30 H 1.08998 * 109.46630 * 120.00019 * 2 1 3 31 31 H 1.07993 * 125.56493 * 0.02562 * 4 3 2 32 32 H 1.08001 * 126.06700 * 179.69086 * 5 4 3 33 33 H 1.07995 * 126.46422 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47065 * 174.31936 * 11 10 8 35 35 H 1.09003 * 109.47193 * 294.31821 * 11 10 8 36 36 H 1.09006 * 109.47344 * 54.31898 * 11 10 8 37 37 H 1.09006 * 109.46652 * 156.51822 * 12 10 8 38 38 H 1.08990 * 109.47212 * 36.51720 * 12 10 8 39 39 H 1.08996 * 113.74199 * 252.25611 * 15 13 12 40 40 H 1.08998 * 113.74191 * 23.46567 * 15 13 12 41 41 H 1.09004 * 113.76972 * 90.69776 * 16 15 13 42 42 H 1.08999 * 113.77060 * 221.98001 * 16 15 13 43 43 H 0.97000 * 119.99995 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3780 2.0925 -1.0963 5 6 2.7823 3.3248 -0.7056 6 6 2.6672 3.3930 0.6863 7 6 2.1855 2.1736 1.1131 8 6 1.9078 1.7888 2.5010 9 8 1.5451 0.6558 2.7572 10 7 2.0541 2.6900 3.4923 11 6 2.4021 4.0773 3.1756 12 6 1.8651 2.2822 4.8867 13 6 0.3745 2.3156 5.2303 14 1 -0.2423 1.7932 4.4990 15 6 0.0654 1.9331 6.6891 16 6 -0.9413 3.0977 6.6759 17 7 -0.1256 3.6597 5.5787 18 6 0.0834 4.9194 5.0843 19 1 0.6608 5.0564 4.1820 20 6 -0.4468 6.0203 5.7429 21 7 -1.1500 5.8534 6.8429 22 14 -0.1623 7.7387 5.0680 23 1 -1.2557 8.0878 4.1259 24 1 -0.1439 8.7137 6.1881 25 1 1.1389 7.7808 4.3537 26 1 -0.3633 0.5894 0.8418 27 1 -0.3632 0.4344 -0.9314 28 1 -0.3633 -1.0238 0.0895 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.3512 1.7337 -2.1145 32 1 3.1323 4.1144 -1.3540 33 1 2.9095 4.2410 1.3096 34 1 2.3776 4.6751 4.0867 35 1 3.4031 4.1117 2.7454 36 1 1.6847 4.4775 2.4590 37 1 2.4044 2.9667 5.5416 38 1 2.2472 1.2708 5.0244 39 1 -0.3990 0.9529 6.7967 40 1 0.9037 2.0832 7.3692 41 1 -1.9460 2.8066 6.3694 42 1 -0.9314 3.6973 7.5861 43 1 -1.5202 6.6227 7.3033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085973272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:24 Heat of formation + Delta-G solvation = 75.383921 kcal Electronic energy + Delta-G solvation = -24314.135997 eV Core-core repulsion = 20976.541679 eV Total energy + Delta-G solvation = -3337.594317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.41812 -40.51923 -39.21790 -36.69390 -34.86834 -34.23930 -31.38340 -30.25488 -29.92463 -28.86050 -27.73765 -25.24479 -24.56616 -24.35519 -22.30080 -21.55317 -20.85396 -19.98687 -18.76438 -18.00441 -17.39475 -16.84533 -16.68928 -16.57610 -15.84955 -15.72434 -15.31754 -15.08604 -14.77322 -14.67406 -14.51658 -13.93555 -13.83177 -13.42097 -13.35917 -13.12846 -13.06492 -12.92754 -12.89043 -12.64806 -12.46509 -12.35239 -12.16222 -12.05327 -11.68532 -11.47091 -11.22504 -10.84897 -10.75372 -9.73084 -9.56434 -9.10851 -8.81258 -7.80220 -5.14637 0.53962 1.47908 1.49975 1.57632 1.66388 1.89714 2.33432 2.42595 2.51952 3.36065 3.43794 3.61679 3.82598 3.98015 4.10414 4.19101 4.25271 4.30219 4.37467 4.39422 4.45179 4.50309 4.55788 4.61878 4.70036 4.74547 4.85774 4.90081 4.94356 4.99959 5.05702 5.13526 5.20885 5.32059 5.37820 5.50759 5.64641 5.74818 5.91243 6.01705 6.06614 6.39130 6.46367 6.99244 7.16621 7.70972 8.67902 9.36406 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016715 B = 0.005365 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.748943 B = 5217.969925 C = 6234.741696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.096 3.904 3 N -0.416 5.416 4 C 0.024 3.976 5 C -0.224 4.224 6 C -0.163 4.163 7 C -0.084 4.084 8 C 0.575 3.425 9 O -0.584 6.584 10 N -0.593 5.593 11 C 0.070 3.930 12 C 0.133 3.867 13 C 0.133 3.867 14 H 0.025 0.975 15 C -0.131 4.131 16 C 0.142 3.858 17 N -0.623 5.623 18 C -0.222 4.222 19 H 0.103 0.897 20 C -0.073 4.073 21 N -0.957 5.957 22 Si 0.964 3.036 23 H -0.297 1.297 24 H -0.300 1.300 25 H -0.252 1.252 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.204 0.796 32 H 0.164 0.836 33 H 0.171 0.829 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.005 0.995 42 H 0.053 0.947 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.929 -9.121 -14.995 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.024 4.024 3 N -0.090 5.090 4 C -0.112 4.112 5 C -0.248 4.248 6 C -0.189 4.189 7 C -0.197 4.197 8 C 0.367 3.633 9 O -0.468 6.468 10 N -0.322 5.322 11 C -0.071 4.071 12 C 0.009 3.991 13 C 0.026 3.974 14 H 0.042 0.958 15 C -0.169 4.169 16 C 0.017 3.983 17 N -0.349 5.349 18 C -0.350 4.350 19 H 0.120 0.880 20 C -0.265 4.265 21 N -0.607 5.607 22 Si 0.793 3.207 23 H -0.225 1.225 24 H -0.226 1.226 25 H -0.176 1.176 26 H 0.043 0.957 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.143 0.857 30 H 0.101 0.899 31 H 0.221 0.779 32 H 0.182 0.818 33 H 0.188 0.812 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.023 0.977 42 H 0.071 0.929 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.614 -9.737 -14.817 20.169 hybrid contribution -0.774 1.188 0.116 1.422 sum 8.840 -8.549 -14.701 19.166 Atomic orbital electron populations 1.21999 0.94382 1.03416 1.01473 1.22108 0.95704 0.79219 1.05407 1.44288 1.47298 1.12160 1.05274 1.22682 1.03183 0.92820 0.92486 1.21234 1.10195 0.98542 0.94783 1.22666 1.02637 0.96527 0.97058 1.20012 1.17340 0.94653 0.87688 1.17379 0.77136 0.84363 0.84469 1.90700 1.50015 1.21265 1.84794 1.47451 1.68120 1.10437 1.06213 1.22629 1.00621 0.81072 1.02818 1.21763 0.95944 1.00981 0.80404 1.22612 0.94013 0.85646 0.95163 0.95774 1.23540 0.99818 0.97879 0.95677 1.22282 0.92054 0.91327 0.92651 1.46527 1.50577 1.00772 1.37073 1.19813 1.27147 0.81773 1.06251 0.87972 1.25612 1.01435 1.01235 0.98215 1.70029 1.41125 1.29120 1.20403 0.85275 0.78613 0.80045 0.76787 1.22463 1.22650 1.17580 0.95652 0.91158 0.89181 0.85685 0.89911 0.77877 0.81834 0.81171 0.90011 0.89101 0.91770 0.89310 0.89765 0.90383 0.89113 0.97672 0.92891 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 10.24 71.99 0.74 -2.72 16 2 C 0.10 2.07 6.16 86.38 0.53 2.60 16 3 N -0.42 -10.59 2.76 -511.01 -1.41 -12.01 16 4 C 0.02 0.47 11.37 83.47 0.95 1.41 16 5 C -0.22 -4.79 10.81 22.01 0.24 -4.55 16 6 C -0.16 -4.33 8.80 22.57 0.20 -4.13 16 7 C -0.08 -2.63 6.81 40.35 0.27 -2.35 16 8 C 0.57 20.94 7.58 86.45 0.66 21.59 16 9 O -0.58 -23.50 14.44 -4.34 -0.06 -23.56 16 10 N -0.59 -20.93 2.89 -851.49 -2.46 -23.39 16 11 C 0.07 2.17 6.82 127.77 0.87 3.05 16 12 C 0.13 4.82 5.16 86.38 0.45 5.27 16 13 C 0.13 5.65 4.48 45.09 0.20 5.85 16 14 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 15 C -0.13 -5.04 7.86 31.25 0.25 -4.80 16 16 C 0.14 7.03 7.70 86.44 0.67 7.70 16 17 N -0.62 -31.79 3.58 -690.74 -2.47 -34.26 16 18 C -0.22 -11.88 9.85 84.03 0.83 -11.05 16 19 H 0.10 5.01 4.31 -2.91 -0.01 4.99 16 20 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 21 N -0.96 -58.01 11.30 21.65 0.24 -57.77 16 22 Si 0.96 44.65 29.55 68.60 2.03 46.68 16 23 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 25 H -0.25 -10.41 7.11 99.48 0.71 -9.71 16 26 H 0.02 0.77 8.08 -2.39 -0.02 0.75 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 29 H 0.13 1.64 8.12 -2.39 -0.02 1.62 16 30 H 0.08 2.19 6.57 -2.39 -0.02 2.17 16 31 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.17 4.10 4.08 -2.91 -0.01 4.09 16 34 H 0.08 2.78 6.05 -2.39 -0.01 2.76 16 35 H 0.09 2.20 6.32 -2.39 -0.02 2.19 16 36 H 0.06 2.05 6.35 -2.38 -0.02 2.03 16 37 H 0.09 3.18 7.84 -2.38 -0.02 3.16 16 38 H 0.08 2.87 7.69 -2.39 -0.02 2.85 16 39 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.09 3.23 8.10 -2.39 -0.02 3.21 16 41 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.05 2.89 6.89 -2.39 -0.02 2.87 16 43 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -72.63 340.52 4.18 -68.45 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 1.01 Total: 21.61 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 7.31 Total: 14.25 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -6.10 Total: -127.43 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.06 Total: -23.56 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -72.63 4.18 -68.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085973272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.831 kcal (2) G-P(sol) polarization free energy of solvation -72.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds