Wall clock time and date at job start Tue Mar 31 2020 06:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47204 * 2 1 4 4 C 1.35538 * 125.68196 * 264.16715 * 3 2 1 5 5 C 1.35445 * 108.87450 * 180.25975 * 4 3 2 6 6 C 1.39838 * 107.86430 * 359.77434 * 5 4 3 7 7 C 1.37653 * 125.67775 * 84.03383 * 3 2 1 8 8 C 1.46680 * 126.23457 * 0.02562 * 7 3 2 9 9 O 1.21697 * 119.99697 * 26.13991 * 8 7 3 10 10 N 1.34772 * 120.00057 * 206.14229 * 8 7 3 11 11 C 1.46502 * 119.99982 * 175.04390 * 10 8 7 12 12 C 1.46499 * 120.00057 * 355.04902 * 10 8 7 13 13 C 1.53007 * 109.47018 * 260.91200 * 12 10 8 14 14 H 1.09005 * 112.96368 * 300.49333 * 13 12 10 15 15 C 1.53937 * 113.76999 * 168.80993 * 13 12 10 16 16 C 1.53942 * 86.28998 * 222.09230 * 15 13 12 17 17 N 1.47578 * 86.24049 * 23.54961 * 16 15 13 18 18 C 1.36943 * 134.48810 * 155.42086 * 17 16 15 19 19 H 1.08002 * 119.99513 * 207.01774 * 18 17 16 20 20 C 1.38806 * 120.00411 * 27.02288 * 18 17 16 21 21 N 1.31618 * 119.99740 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00137 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47064 * 90.00239 * 22 20 18 24 24 H 1.48499 * 109.47218 * 209.99980 * 22 20 18 25 25 H 1.48500 * 109.47421 * 330.00341 * 22 20 18 26 26 H 1.09006 * 109.46920 * 64.97946 * 1 2 3 27 27 H 1.09000 * 109.47360 * 184.97616 * 1 2 3 28 28 H 1.08994 * 109.47299 * 304.97855 * 1 2 3 29 29 H 1.09000 * 109.47466 * 239.99644 * 2 1 3 30 30 H 1.09002 * 109.47127 * 120.00121 * 2 1 3 31 31 H 1.07999 * 125.56101 * 0.02562 * 4 3 2 32 32 H 1.07997 * 126.06982 * 179.78406 * 5 4 3 33 33 H 1.08004 * 126.45668 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.47095 * 275.15954 * 11 10 8 35 35 H 1.09001 * 109.46859 * 35.15588 * 11 10 8 36 36 H 1.08999 * 109.46904 * 155.15471 * 11 10 8 37 37 H 1.08994 * 109.47190 * 140.91556 * 12 10 8 38 38 H 1.09000 * 109.47281 * 20.91163 * 12 10 8 39 39 H 1.09005 * 113.74085 * 107.74485 * 15 13 12 40 40 H 1.08998 * 113.83964 * 336.44805 * 15 13 12 41 41 H 1.08999 * 113.77266 * 137.90979 * 16 15 13 42 42 H 1.09000 * 113.77064 * 269.19127 * 16 15 13 43 43 H 0.97008 * 119.99870 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3873 2.0892 -1.0952 5 6 2.7875 3.3230 -0.7050 6 6 2.6607 3.3952 0.6857 7 6 2.1763 2.1768 1.1121 8 6 1.8884 1.7956 2.4989 9 8 1.9336 0.6255 2.8302 10 7 1.5737 2.7412 3.4062 11 6 1.1804 2.3525 4.7629 12 6 1.6247 4.1576 3.0358 13 6 2.9390 4.7667 3.5289 14 1 3.0620 4.6948 4.6096 15 6 3.2228 6.1702 2.9639 16 6 4.6767 5.6959 2.7875 17 7 4.1249 4.3274 2.7639 18 6 4.5438 3.1326 2.2420 19 1 3.8197 2.3803 1.9662 20 6 5.8991 2.8884 2.0675 21 7 6.7815 3.8054 2.4033 22 14 6.4705 1.2584 1.3563 23 1 6.5529 1.3654 -0.1226 24 1 7.8092 0.9216 1.9036 25 1 5.5036 0.1924 1.7223 26 1 -0.3633 0.4347 -0.9313 27 1 -0.3634 -1.0238 0.0891 28 1 -0.3633 0.5891 0.8420 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.3692 1.7273 -2.1126 32 1 3.1414 4.1112 -1.3530 33 1 2.8972 4.2453 1.3084 34 1 0.1146 2.1251 4.7812 35 1 1.7452 1.4710 5.0664 36 1 1.3890 3.1722 5.4505 37 1 0.7866 4.6832 3.4933 38 1 1.5647 4.2521 1.9516 39 1 3.1077 6.9695 3.6961 40 1 2.7120 6.3783 2.0238 41 1 5.1280 6.0040 1.8444 42 1 5.3126 5.8984 3.6494 43 1 7.7286 3.6350 2.2810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085973273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:28 Heat of formation + Delta-G solvation = 122.344678 kcal Electronic energy + Delta-G solvation = -25707.966677 eV Core-core repulsion = 22372.408730 eV Total energy + Delta-G solvation = -3335.557946 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09089 -38.81151 -37.78338 -34.81116 -33.65893 -32.19229 -29.82856 -28.76984 -28.29285 -27.31426 -25.90800 -23.31867 -23.12976 -22.57913 -20.87866 -20.23300 -18.98155 -18.39279 -16.88405 -16.60320 -15.63086 -15.39894 -15.14266 -14.49327 -14.19630 -14.07006 -13.85100 -13.64244 -13.28733 -13.02716 -12.70156 -12.39461 -12.03250 -11.89630 -11.85693 -11.71048 -11.56546 -11.37717 -11.28191 -11.14702 -10.92159 -10.73628 -10.44150 -10.35626 -10.04564 -9.67230 -9.37622 -9.20429 -8.57760 -8.04726 -7.81097 -7.07216 -6.58841 -5.79038 -3.13999 2.27598 3.21967 3.41736 3.48505 3.53130 3.57016 3.84281 4.11181 4.51919 4.99033 5.04730 5.23749 5.26967 5.43614 5.46579 5.56128 5.59809 5.70752 5.72938 5.75912 5.79114 5.91277 5.95039 5.99118 6.15249 6.19223 6.24962 6.25897 6.40656 6.42992 6.64767 6.78118 6.97082 7.02472 7.18950 7.20726 7.40467 7.60791 7.79329 7.86607 7.92151 8.00291 8.09011 8.85002 9.10642 9.75221 10.66820 11.37342 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.009453 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.251234 B = 2961.353317 C = 3784.221083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.094 3.906 3 N -0.419 5.419 4 C 0.001 3.999 5 C -0.223 4.223 6 C -0.087 4.087 7 C -0.081 4.081 8 C 0.605 3.395 9 O -0.568 6.568 10 N -0.599 5.599 11 C 0.095 3.905 12 C 0.080 3.920 13 C 0.108 3.892 14 H 0.045 0.955 15 C -0.162 4.162 16 C 0.160 3.840 17 N -0.589 5.589 18 C -0.235 4.235 19 H 0.111 0.889 20 C 0.011 3.989 21 N -0.905 5.905 22 Si 0.889 3.111 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.277 1.277 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.154 0.846 32 H 0.131 0.869 33 H 0.193 0.807 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.114 0.886 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.038 0.962 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.981 0.974 -2.872 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.028 4.028 3 N -0.094 5.094 4 C -0.134 4.134 5 C -0.248 4.248 6 C -0.112 4.112 7 C -0.192 4.192 8 C 0.397 3.603 9 O -0.449 6.449 10 N -0.330 5.330 11 C -0.048 4.048 12 C -0.044 4.044 13 C 0.001 3.999 14 H 0.063 0.937 15 C -0.201 4.201 16 C 0.035 3.965 17 N -0.315 5.315 18 C -0.362 4.362 19 H 0.128 0.872 20 C -0.188 4.188 21 N -0.549 5.549 22 Si 0.718 3.282 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.202 1.202 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.172 0.828 32 H 0.149 0.851 33 H 0.209 0.791 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.836 -0.238 -2.723 13.124 hybrid contribution 0.930 -1.012 -0.183 1.387 sum -11.906 -1.250 -2.905 12.319 Atomic orbital electron populations 1.22065 0.94968 1.02351 1.02334 1.21892 0.95046 0.81226 1.04633 1.43781 1.49221 1.10797 1.05631 1.21757 1.06926 0.93695 0.90993 1.20795 1.10581 0.97321 0.96108 1.23023 0.95611 0.97638 0.94912 1.19733 1.19028 0.93298 0.87098 1.16830 0.74993 0.84455 0.83987 1.90691 1.54623 1.18569 1.81050 1.47228 1.67730 1.06711 1.11314 1.21476 0.98966 1.01464 0.82848 1.22721 0.97792 0.79915 1.03982 1.22797 0.89769 0.91906 0.95423 0.93731 1.23820 1.00606 0.95444 1.00180 1.22121 0.91110 0.84002 0.99281 1.46429 1.21084 1.05382 1.58609 1.20150 0.91006 0.92795 1.32250 0.87230 1.25208 0.96314 0.97059 1.00223 1.69875 1.00748 1.33412 1.50885 0.86443 0.77908 0.84914 0.78902 1.21173 1.21775 1.20185 0.92469 0.91326 0.92161 0.90014 0.87939 0.82848 0.85074 0.79080 0.93569 0.91132 0.91364 0.91618 0.86870 0.92655 0.90496 0.93227 0.94441 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.09 1.48 6.43 -4.05 -0.03 1.45 16 3 N -0.42 -7.82 2.76 -112.88 -0.31 -8.14 16 4 C 0.00 0.01 11.37 -16.91 -0.19 -0.18 16 5 C -0.22 -4.18 10.81 -39.98 -0.43 -4.61 16 6 C -0.09 -1.79 5.34 -39.12 -0.21 -1.99 16 7 C -0.08 -1.70 4.98 -81.98 -0.41 -2.11 16 8 C 0.61 13.16 5.78 -12.85 -0.07 13.09 16 9 O -0.57 -13.55 14.73 5.19 0.08 -13.47 16 10 N -0.60 -11.25 2.84 -183.12 -0.52 -11.77 16 11 C 0.10 1.51 10.42 59.85 0.62 2.13 16 12 C 0.08 1.33 5.00 -4.04 -0.02 1.31 16 13 C 0.11 2.05 4.38 -66.74 -0.29 1.75 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.16 -2.68 7.44 -25.80 -0.19 -2.88 16 16 C 0.16 3.50 7.40 -2.98 -0.02 3.48 16 17 N -0.59 -13.97 2.17 -169.76 -0.37 -14.34 16 18 C -0.24 -6.36 7.36 -15.06 -0.11 -6.47 16 19 H 0.11 2.97 2.33 -52.49 -0.12 2.85 16 20 C 0.01 0.32 5.49 -17.43 -0.10 0.22 16 21 N -0.91 -26.93 12.32 55.49 0.68 -26.24 16 22 Si 0.89 23.64 29.55 -169.99 -5.02 18.61 16 23 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 25 H -0.28 -7.58 7.11 56.52 0.40 -7.18 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 30 H 0.10 1.88 6.46 -51.93 -0.34 1.54 16 31 H 0.15 2.07 8.06 -52.49 -0.42 1.64 16 32 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.19 4.04 2.44 -52.48 -0.13 3.91 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.24 7.51 -51.93 -0.39 0.85 16 36 H 0.07 0.93 8.03 -51.93 -0.42 0.51 16 37 H 0.07 0.88 8.13 -51.93 -0.42 0.45 16 38 H 0.11 1.97 3.95 -51.93 -0.21 1.76 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.16 7.88 -51.93 -0.41 0.76 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 332.54 15.07 5.01 5.01 Total: -1.00 -33.70 332.54 -7.74 -41.43 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.21 Total: 5.38 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.07 Total: 3.52 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.52 Total: -60.49 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.02 Total: 18.61 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.70 -7.74 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085973273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.779 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds