Wall clock time and date at job start Tue Mar 31 2020 06:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47204 * 2 1 4 4 C 1.35538 * 125.68196 * 264.16715 * 3 2 1 5 5 C 1.35445 * 108.87450 * 180.25975 * 4 3 2 6 6 C 1.39838 * 107.86430 * 359.77434 * 5 4 3 7 7 C 1.37653 * 125.67775 * 84.03383 * 3 2 1 8 8 C 1.46680 * 126.23457 * 0.02562 * 7 3 2 9 9 O 1.21697 * 119.99697 * 26.13991 * 8 7 3 10 10 N 1.34772 * 120.00057 * 206.14229 * 8 7 3 11 11 C 1.46502 * 119.99982 * 175.04390 * 10 8 7 12 12 C 1.46499 * 120.00057 * 355.04902 * 10 8 7 13 13 C 1.53007 * 109.47018 * 260.91200 * 12 10 8 14 14 H 1.09005 * 112.96368 * 300.49333 * 13 12 10 15 15 C 1.53937 * 113.76999 * 168.80993 * 13 12 10 16 16 C 1.53942 * 86.28998 * 222.09230 * 15 13 12 17 17 N 1.47578 * 86.24049 * 23.54961 * 16 15 13 18 18 C 1.36943 * 134.48810 * 155.42086 * 17 16 15 19 19 H 1.08002 * 119.99513 * 207.01774 * 18 17 16 20 20 C 1.38806 * 120.00411 * 27.02288 * 18 17 16 21 21 N 1.31618 * 119.99740 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00137 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47064 * 90.00239 * 22 20 18 24 24 H 1.48499 * 109.47218 * 209.99980 * 22 20 18 25 25 H 1.48500 * 109.47421 * 330.00341 * 22 20 18 26 26 H 1.09006 * 109.46920 * 64.97946 * 1 2 3 27 27 H 1.09000 * 109.47360 * 184.97616 * 1 2 3 28 28 H 1.08994 * 109.47299 * 304.97855 * 1 2 3 29 29 H 1.09000 * 109.47466 * 239.99644 * 2 1 3 30 30 H 1.09002 * 109.47127 * 120.00121 * 2 1 3 31 31 H 1.07999 * 125.56101 * 0.02562 * 4 3 2 32 32 H 1.07997 * 126.06982 * 179.78406 * 5 4 3 33 33 H 1.08004 * 126.45668 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.47095 * 275.15954 * 11 10 8 35 35 H 1.09001 * 109.46859 * 35.15588 * 11 10 8 36 36 H 1.08999 * 109.46904 * 155.15471 * 11 10 8 37 37 H 1.08994 * 109.47190 * 140.91556 * 12 10 8 38 38 H 1.09000 * 109.47281 * 20.91163 * 12 10 8 39 39 H 1.09005 * 113.74085 * 107.74485 * 15 13 12 40 40 H 1.08998 * 113.83964 * 336.44805 * 15 13 12 41 41 H 1.08999 * 113.77266 * 137.90979 * 16 15 13 42 42 H 1.09000 * 113.77064 * 269.19127 * 16 15 13 43 43 H 0.97008 * 119.99870 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3873 2.0892 -1.0952 5 6 2.7875 3.3230 -0.7050 6 6 2.6607 3.3952 0.6857 7 6 2.1763 2.1768 1.1121 8 6 1.8884 1.7956 2.4989 9 8 1.9336 0.6255 2.8302 10 7 1.5737 2.7412 3.4062 11 6 1.1804 2.3525 4.7629 12 6 1.6247 4.1576 3.0358 13 6 2.9390 4.7667 3.5289 14 1 3.0620 4.6948 4.6096 15 6 3.2228 6.1702 2.9639 16 6 4.6767 5.6959 2.7875 17 7 4.1249 4.3274 2.7639 18 6 4.5438 3.1326 2.2420 19 1 3.8197 2.3803 1.9662 20 6 5.8991 2.8884 2.0675 21 7 6.7815 3.8054 2.4033 22 14 6.4705 1.2584 1.3563 23 1 6.5529 1.3654 -0.1226 24 1 7.8092 0.9216 1.9036 25 1 5.5036 0.1924 1.7223 26 1 -0.3633 0.4347 -0.9313 27 1 -0.3634 -1.0238 0.0891 28 1 -0.3633 0.5891 0.8420 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.3692 1.7273 -2.1126 32 1 3.1414 4.1112 -1.3530 33 1 2.8972 4.2453 1.3084 34 1 0.1146 2.1251 4.7812 35 1 1.7452 1.4710 5.0664 36 1 1.3890 3.1722 5.4505 37 1 0.7866 4.6832 3.4933 38 1 1.5647 4.2521 1.9516 39 1 3.1077 6.9695 3.6961 40 1 2.7120 6.3783 2.0238 41 1 5.1280 6.0040 1.8444 42 1 5.3126 5.8984 3.6494 43 1 7.7286 3.6350 2.2810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085973273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:28 Heat of formation + Delta-G solvation = 101.525391 kcal Electronic energy + Delta-G solvation = -25708.869469 eV Core-core repulsion = 22372.408730 eV Total energy + Delta-G solvation = -3336.460738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.57555 -40.33122 -39.43452 -36.36097 -34.99003 -34.17631 -31.30638 -30.08995 -29.98578 -28.95346 -27.30261 -25.15279 -24.48513 -24.08930 -22.35472 -21.72468 -20.60286 -19.86312 -18.70247 -18.08251 -17.18962 -17.06788 -16.54108 -16.26063 -15.82768 -15.47213 -15.43173 -15.19982 -14.77667 -14.42853 -14.23706 -13.81777 -13.60107 -13.34169 -13.25890 -13.16862 -13.04617 -12.94091 -12.86649 -12.75120 -12.64959 -12.34674 -12.13721 -11.91812 -11.71237 -11.41332 -11.11199 -10.82434 -10.63843 -9.59211 -9.25678 -8.63909 -8.49077 -7.91438 -5.23378 0.76056 1.29000 1.30695 1.40143 1.84865 2.04210 2.42375 2.47274 2.55885 3.33607 3.49003 3.78259 3.83523 4.08013 4.12240 4.26817 4.29858 4.37744 4.41357 4.48391 4.59746 4.62663 4.67520 4.76964 4.86229 4.86549 4.91027 5.01683 5.02269 5.12068 5.18077 5.19936 5.38724 5.55916 5.60060 5.71084 5.80389 5.82783 6.08340 6.14951 6.33942 6.45913 6.61723 7.03219 7.27917 7.68917 8.67792 9.25906 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.009453 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.251234 B = 2961.353317 C = 3784.221083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.087 3.913 3 N -0.424 5.424 4 C 0.017 3.983 5 C -0.244 4.244 6 C -0.099 4.099 7 C -0.107 4.107 8 C 0.592 3.408 9 O -0.603 6.603 10 N -0.600 5.600 11 C 0.091 3.909 12 C 0.082 3.918 13 C 0.110 3.890 14 H 0.045 0.955 15 C -0.124 4.124 16 C 0.150 3.850 17 N -0.613 5.613 18 C -0.210 4.210 19 H 0.112 0.888 20 C -0.051 4.051 21 N -0.940 5.940 22 Si 0.927 3.073 23 H -0.281 1.281 24 H -0.296 1.296 25 H -0.294 1.294 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.036 0.964 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.197 0.803 32 H 0.146 0.854 33 H 0.187 0.813 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.027 0.973 42 H 0.014 0.986 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.812 1.806 -3.808 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 N -0.099 5.099 4 C -0.118 4.118 5 C -0.269 4.269 6 C -0.125 4.125 7 C -0.218 4.218 8 C 0.385 3.615 9 O -0.488 6.488 10 N -0.330 5.330 11 C -0.051 4.051 12 C -0.041 4.041 13 C 0.003 3.997 14 H 0.062 0.938 15 C -0.163 4.163 16 C 0.025 3.975 17 N -0.340 5.340 18 C -0.338 4.338 19 H 0.129 0.871 20 C -0.245 4.245 21 N -0.589 5.589 22 Si 0.758 3.242 23 H -0.207 1.207 24 H -0.223 1.223 25 H -0.221 1.221 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.055 0.945 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.214 0.786 32 H 0.164 0.836 33 H 0.203 0.797 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.112 0.888 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.045 0.955 42 H 0.032 0.968 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -15.713 0.614 -3.642 16.141 hybrid contribution 1.640 -1.268 0.094 2.076 sum -14.073 -0.654 -3.548 14.528 Atomic orbital electron populations 1.21974 0.92688 1.03541 1.02258 1.22100 0.96950 0.79819 1.04562 1.44118 1.48717 1.11651 1.05448 1.22423 1.04194 0.92909 0.92314 1.21095 1.11405 0.98745 0.95652 1.23037 0.96031 0.97491 0.95952 1.19807 1.20310 0.94144 0.87523 1.17197 0.74925 0.84523 0.84902 1.90662 1.56369 1.20001 1.81731 1.47440 1.66518 1.07170 1.11863 1.21666 1.00109 1.01431 0.81873 1.22770 0.98020 0.78999 1.04272 1.23011 0.88584 0.93097 0.94971 0.93777 1.23574 0.95662 0.95033 1.01984 1.22118 0.94129 0.84027 0.97254 1.46725 1.22543 1.04985 1.59717 1.20428 0.90557 0.93418 1.29416 0.87073 1.25656 0.97194 0.98745 1.02887 1.69971 1.00157 1.34370 1.54389 0.85824 0.76799 0.82868 0.78678 1.20745 1.22282 1.22062 0.90518 0.89103 0.94503 0.86891 0.91174 0.78636 0.83614 0.79720 0.90945 0.93743 0.88757 0.86838 0.87262 0.88936 0.88300 0.95476 0.96759 0.94813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 10.24 71.98 0.74 -2.74 16 2 C 0.09 2.59 6.43 86.38 0.56 3.15 16 3 N -0.42 -15.18 2.76 -511.04 -1.41 -16.59 16 4 C 0.02 0.54 11.37 83.47 0.95 1.49 16 5 C -0.24 -8.71 10.81 22.01 0.24 -8.47 16 6 C -0.10 -3.99 5.34 22.57 0.12 -3.87 16 7 C -0.11 -4.41 4.98 40.35 0.20 -4.21 16 8 C 0.59 25.63 5.78 86.45 0.50 26.13 16 9 O -0.60 -29.37 14.73 -4.34 -0.06 -29.44 16 10 N -0.60 -21.60 2.84 -851.50 -2.42 -24.02 16 11 C 0.09 2.71 10.42 127.77 1.33 4.05 16 12 C 0.08 2.49 5.00 86.38 0.43 2.92 16 13 C 0.11 3.87 4.38 45.05 0.20 4.06 16 14 H 0.04 1.61 8.14 -2.38 -0.02 1.60 16 15 C -0.12 -3.71 7.44 31.25 0.23 -3.48 16 16 C 0.15 6.54 7.40 86.48 0.64 7.18 16 17 N -0.61 -28.92 2.17 -691.00 -1.50 -30.42 16 18 C -0.21 -11.48 7.36 84.03 0.62 -10.86 16 19 H 0.11 6.08 2.33 -2.91 -0.01 6.08 16 20 C -0.05 -3.01 5.49 84.86 0.47 -2.54 16 21 N -0.94 -58.03 12.32 21.65 0.27 -57.76 16 22 Si 0.93 50.14 29.55 68.60 2.03 52.16 16 23 H -0.28 -14.68 7.11 99.48 0.71 -13.97 16 24 H -0.30 -16.00 7.11 99.48 0.71 -15.29 16 25 H -0.29 -16.49 7.11 99.48 0.71 -15.79 16 26 H 0.08 1.51 8.14 -2.38 -0.02 1.50 16 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.11 2.61 8.12 -2.39 -0.02 2.60 16 30 H 0.07 2.59 6.46 -2.39 -0.02 2.57 16 31 H 0.20 4.37 8.06 -2.91 -0.02 4.35 16 32 H 0.15 4.63 8.06 -2.91 -0.02 4.61 16 33 H 0.19 7.58 2.44 -2.91 -0.01 7.57 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.04 1.55 7.51 -2.39 -0.02 1.54 16 36 H 0.09 2.28 8.03 -2.39 -0.02 2.26 16 37 H 0.11 2.43 8.13 -2.39 -0.02 2.41 16 38 H 0.11 3.51 3.95 -2.39 -0.01 3.50 16 39 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.10 2.58 7.88 -2.39 -0.02 2.57 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.24 14.82 8.31 -92.70 -0.77 14.05 16 Total: -1.00 -77.71 332.54 5.13 -72.58 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 1.01 Total: 20.69 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 7.22 Total: 12.80 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -5.06 Total: -128.80 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.06 Total: -29.44 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.03 Total: 52.16 kcal Total: -77.71 5.13 -72.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085973273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.103 kcal (2) G-P(sol) polarization free energy of solvation -77.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds