Wall clock time and date at job start Tue Mar 31 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47337 * 2 1 4 4 C 1.35538 * 125.67949 * 263.43252 * 3 2 1 5 5 C 1.35458 * 108.87019 * 180.30091 * 4 3 2 6 6 C 1.39833 * 107.86614 * 359.72827 * 5 4 3 7 7 C 1.37655 * 125.67769 * 83.27168 * 3 2 1 8 8 C 1.46676 * 126.23264 * 359.96613 * 7 3 2 9 9 O 1.21696 * 120.00091 * 4.73426 * 8 7 3 10 10 N 1.34775 * 119.99771 * 184.73864 * 8 7 3 11 11 C 1.46499 * 119.99914 * 174.99173 * 10 8 7 12 12 C 1.52999 * 109.47445 * 179.97438 * 11 10 8 13 13 H 1.09004 * 112.90483 * 43.74442 * 12 11 10 14 14 C 1.53779 * 113.62079 * 174.99885 * 12 11 10 15 15 C 1.53779 * 87.08570 * 139.97963 * 14 12 11 16 16 H 1.08997 * 113.61368 * 89.11686 * 15 14 12 17 17 N 1.46500 * 113.61292 * 219.93907 * 15 14 12 18 18 C 1.36931 * 119.99510 * 204.99700 * 17 15 14 19 19 H 1.08009 * 120.00548 * 0.02562 * 18 17 15 20 20 C 1.38822 * 119.99940 * 179.97438 * 18 17 15 21 21 N 1.31616 * 119.99744 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99903 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47162 * 89.99943 * 22 20 18 24 24 H 1.48504 * 109.46553 * 209.99696 * 22 20 18 25 25 H 1.48496 * 109.47162 * 329.99641 * 22 20 18 26 26 C 1.53779 * 113.61223 * 272.49795 * 12 11 10 27 27 H 1.08996 * 109.47476 * 300.00199 * 1 2 3 28 28 H 1.09000 * 109.46587 * 60.00163 * 1 2 3 29 29 H 1.08999 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47476 * 239.99801 * 2 1 3 31 31 H 1.09005 * 109.47031 * 119.99741 * 2 1 3 32 32 H 1.07998 * 125.56229 * 359.97438 * 4 3 2 33 33 H 1.07998 * 126.06275 * 179.76460 * 5 4 3 34 34 H 1.07997 * 126.45831 * 179.97438 * 6 5 4 35 35 H 0.97003 * 120.00428 * 354.98267 * 10 8 7 36 36 H 1.08996 * 109.47531 * 59.99442 * 11 10 8 37 37 H 1.09007 * 109.47203 * 299.99661 * 11 10 8 38 38 H 1.09004 * 113.61562 * 254.53060 * 14 12 11 39 39 H 1.09004 * 113.61298 * 25.34181 * 14 12 11 40 40 H 0.96997 * 120.00282 * 25.00045 * 17 15 14 41 41 H 0.96995 * 119.99616 * 180.02562 * 21 20 18 42 42 H 1.09004 * 113.61750 * 334.56073 * 26 12 11 43 43 H 1.09005 * 113.61842 * 105.46852 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4006 2.0845 -1.0937 5 6 2.7970 3.3197 -0.7038 6 6 2.6530 3.3980 0.6849 7 6 2.1625 2.1817 1.1105 8 6 1.8560 1.8070 2.4951 9 8 1.5131 0.6689 2.7558 10 7 1.9541 2.7233 3.4785 11 6 1.5434 2.3807 4.8424 12 6 1.7556 3.5884 5.7576 13 1 1.4216 4.5242 5.3094 14 6 1.2409 3.3735 7.1907 15 6 2.5003 4.1144 7.6701 16 1 2.3698 5.1939 7.7448 17 7 3.1039 3.5298 8.8702 18 6 3.8691 4.3060 9.6991 19 1 4.0273 5.3492 9.4684 20 6 4.4406 3.7522 10.8366 21 7 4.2466 2.4813 11.1185 22 14 5.4839 4.8113 11.9678 23 1 4.6189 5.4287 13.0050 24 1 6.5165 3.9681 12.6220 25 1 6.1457 5.8787 11.1755 26 6 3.1684 3.6638 6.3603 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.3955 1.7179 -2.1096 33 1 3.1592 4.1049 -1.3508 34 1 2.8832 4.2503 1.3069 35 1 2.2966 3.6096 3.2834 36 1 2.1409 1.5432 5.2023 37 1 0.4893 2.1029 4.8456 38 1 0.3135 3.9043 7.4058 39 1 1.2083 2.3259 7.4904 40 1 2.9615 2.5930 9.0775 41 1 4.6457 2.0946 11.9134 42 1 3.6641 2.6957 6.4335 43 1 3.7971 4.4291 5.9051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086273072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:39 Heat of formation + Delta-G solvation = 36.625601 kcal Electronic energy + Delta-G solvation = -22463.287162 eV Core-core repulsion = 19124.012158 eV Total energy + Delta-G solvation = -3339.275004 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.59466 -39.36524 -38.26082 -34.98864 -34.15716 -33.24347 -30.51955 -29.63308 -29.53419 -27.04978 -25.07717 -24.01097 -23.79620 -22.46631 -21.14520 -20.64939 -19.71191 -18.94513 -17.96377 -17.03328 -16.09047 -15.94110 -15.56413 -14.98956 -14.84084 -14.68742 -14.36309 -13.97262 -13.88898 -13.55505 -13.24066 -12.90624 -12.72965 -12.55457 -12.45885 -12.20556 -11.89293 -11.80394 -11.48183 -11.38837 -11.22204 -10.83870 -10.51880 -10.25628 -10.14169 -9.91557 -9.81594 -9.49104 -9.07753 -8.96971 -8.86290 -8.39168 -6.95708 -5.77748 -3.06489 1.33228 2.44779 2.55058 3.29298 3.31368 3.43238 3.48354 3.50185 4.43391 4.58876 4.63214 4.73581 4.77003 4.97381 5.00198 5.02336 5.12429 5.17129 5.24519 5.39035 5.47338 5.51894 5.52949 5.79824 5.82272 5.84442 5.85324 5.93115 5.99648 6.09906 6.26193 6.32083 6.37157 6.44040 6.56834 6.61600 6.79119 6.83893 7.00436 7.12443 7.47912 7.69632 8.15477 8.40921 9.51921 10.10375 10.44526 11.44727 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031213 B = 0.002531 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.842984 B =11060.505726 C =11406.249012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.407 5.407 4 C 0.011 3.989 5 C -0.208 4.208 6 C -0.143 4.143 7 C -0.048 4.048 8 C 0.584 3.416 9 O -0.551 6.551 10 N -0.712 5.712 11 C 0.135 3.865 12 C -0.128 4.128 13 H 0.089 0.911 14 C -0.142 4.142 15 C 0.166 3.834 16 H 0.075 0.925 17 N -0.713 5.713 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.161 4.161 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.166 0.834 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.402 0.598 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.078 0.922 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 -0.608 -26.005 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.080 5.080 4 C -0.124 4.124 5 C -0.232 4.232 6 C -0.170 4.170 7 C -0.162 4.162 8 C 0.372 3.628 9 O -0.431 6.431 10 N -0.363 5.363 11 C 0.012 3.988 12 C -0.147 4.147 13 H 0.107 0.893 14 C -0.182 4.182 15 C 0.054 3.946 16 H 0.093 0.907 17 N -0.351 5.351 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.202 4.202 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.183 0.817 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.237 0.763 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.275 -1.681 -25.615 26.681 hybrid contribution 0.768 0.655 0.464 1.111 sum -6.507 -1.026 -25.152 26.000 Atomic orbital electron populations 1.22062 0.94033 1.03082 1.02810 1.22052 0.96021 0.79603 1.04918 1.44084 1.46839 1.11584 1.05540 1.22005 1.05365 0.93342 0.91718 1.20811 1.09698 0.97479 0.95244 1.21371 1.03861 0.96056 0.95664 1.20128 1.14893 0.92999 0.88165 1.17014 0.77463 0.84895 0.83456 1.90785 1.48869 1.19409 1.84054 1.45706 1.65818 1.15919 1.08845 1.21461 0.99951 0.98052 0.79295 1.22648 1.00095 0.97059 0.94883 0.89278 1.23448 0.99450 1.01899 0.93378 1.21518 0.90755 0.96199 0.86153 0.90652 1.42413 1.58198 1.10856 1.23604 1.19307 1.22755 0.93340 1.02079 0.91091 1.24775 1.01301 0.96143 0.98753 1.69660 1.49053 1.11340 1.28001 0.86189 0.79872 0.79222 0.80903 1.21695 1.21771 1.20732 1.23957 0.94344 1.01916 1.00011 0.91464 0.92456 0.90691 0.89429 0.87541 0.81654 0.84099 0.83893 0.76281 0.91017 0.91711 0.91985 0.90107 0.78067 0.93451 0.90335 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 10.23 37.16 0.38 -0.96 16 2 C 0.09 0.84 6.14 -4.04 -0.02 0.81 16 3 N -0.41 -4.22 2.76 -112.87 -0.31 -4.53 16 4 C 0.01 0.09 11.37 -16.91 -0.19 -0.10 16 5 C -0.21 -1.86 10.81 -39.98 -0.43 -2.29 16 6 C -0.14 -1.44 10.35 -39.12 -0.41 -1.85 16 7 C -0.05 -0.57 6.89 -81.98 -0.56 -1.14 16 8 C 0.58 7.95 7.77 -12.86 -0.10 7.85 16 9 O -0.55 -8.97 14.51 5.19 0.08 -8.89 16 10 N -0.71 -8.53 5.54 -61.62 -0.34 -8.87 16 11 C 0.14 1.79 5.52 -4.04 -0.02 1.77 16 12 C -0.13 -1.70 3.75 -89.81 -0.34 -2.03 16 13 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.14 -2.24 7.39 -25.92 -0.19 -2.44 16 15 C 0.17 3.19 4.48 -67.11 -0.30 2.89 16 16 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 17 N -0.71 -17.81 5.40 -52.63 -0.28 -18.10 16 18 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 19 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 22 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.16 -2.66 7.43 -25.92 -0.19 -2.86 16 27 H 0.07 0.72 7.85 -51.93 -0.41 0.32 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.52 8.12 -51.93 -0.42 0.10 16 31 H 0.11 1.16 6.62 -51.93 -0.34 0.81 16 32 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.14 1.14 7.45 -52.49 -0.39 0.75 16 35 H 0.40 3.91 7.37 -40.82 -0.30 3.61 16 36 H 0.07 1.08 7.84 -51.93 -0.41 0.68 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 40 H 0.39 10.26 7.93 -40.82 -0.32 9.94 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -32.82 358.11 -9.17 -41.99 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -6.77 Total: 10.94 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.63 Total: -7.72 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.21 Total: -59.06 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.08 Total: -8.89 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.82 -9.17 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086273072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.614 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds