Wall clock time and date at job start Tue Mar 31 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47337 * 2 1 4 4 C 1.35538 * 125.67949 * 263.43252 * 3 2 1 5 5 C 1.35458 * 108.87019 * 180.30091 * 4 3 2 6 6 C 1.39833 * 107.86614 * 359.72827 * 5 4 3 7 7 C 1.37655 * 125.67769 * 83.27168 * 3 2 1 8 8 C 1.46676 * 126.23264 * 359.96613 * 7 3 2 9 9 O 1.21696 * 120.00091 * 4.73426 * 8 7 3 10 10 N 1.34775 * 119.99771 * 184.73864 * 8 7 3 11 11 C 1.46499 * 119.99914 * 174.99173 * 10 8 7 12 12 C 1.52999 * 109.47445 * 179.97438 * 11 10 8 13 13 H 1.09004 * 112.90483 * 43.74442 * 12 11 10 14 14 C 1.53779 * 113.62079 * 174.99885 * 12 11 10 15 15 C 1.53779 * 87.08570 * 139.97963 * 14 12 11 16 16 H 1.08997 * 113.61368 * 89.11686 * 15 14 12 17 17 N 1.46500 * 113.61292 * 219.93907 * 15 14 12 18 18 C 1.36931 * 119.99510 * 204.99700 * 17 15 14 19 19 H 1.08009 * 120.00548 * 0.02562 * 18 17 15 20 20 C 1.38822 * 119.99940 * 179.97438 * 18 17 15 21 21 N 1.31616 * 119.99744 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99903 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47162 * 89.99943 * 22 20 18 24 24 H 1.48504 * 109.46553 * 209.99696 * 22 20 18 25 25 H 1.48496 * 109.47162 * 329.99641 * 22 20 18 26 26 C 1.53779 * 113.61223 * 272.49795 * 12 11 10 27 27 H 1.08996 * 109.47476 * 300.00199 * 1 2 3 28 28 H 1.09000 * 109.46587 * 60.00163 * 1 2 3 29 29 H 1.08999 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47476 * 239.99801 * 2 1 3 31 31 H 1.09005 * 109.47031 * 119.99741 * 2 1 3 32 32 H 1.07998 * 125.56229 * 359.97438 * 4 3 2 33 33 H 1.07998 * 126.06275 * 179.76460 * 5 4 3 34 34 H 1.07997 * 126.45831 * 179.97438 * 6 5 4 35 35 H 0.97003 * 120.00428 * 354.98267 * 10 8 7 36 36 H 1.08996 * 109.47531 * 59.99442 * 11 10 8 37 37 H 1.09007 * 109.47203 * 299.99661 * 11 10 8 38 38 H 1.09004 * 113.61562 * 254.53060 * 14 12 11 39 39 H 1.09004 * 113.61298 * 25.34181 * 14 12 11 40 40 H 0.96997 * 120.00282 * 25.00045 * 17 15 14 41 41 H 0.96995 * 119.99616 * 180.02562 * 21 20 18 42 42 H 1.09004 * 113.61750 * 334.56073 * 26 12 11 43 43 H 1.09005 * 113.61842 * 105.46852 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4006 2.0845 -1.0937 5 6 2.7970 3.3197 -0.7038 6 6 2.6530 3.3980 0.6849 7 6 2.1625 2.1817 1.1105 8 6 1.8560 1.8070 2.4951 9 8 1.5131 0.6689 2.7558 10 7 1.9541 2.7233 3.4785 11 6 1.5434 2.3807 4.8424 12 6 1.7556 3.5884 5.7576 13 1 1.4216 4.5242 5.3094 14 6 1.2409 3.3735 7.1907 15 6 2.5003 4.1144 7.6701 16 1 2.3698 5.1939 7.7448 17 7 3.1039 3.5298 8.8702 18 6 3.8691 4.3060 9.6991 19 1 4.0273 5.3492 9.4684 20 6 4.4406 3.7522 10.8366 21 7 4.2466 2.4813 11.1185 22 14 5.4839 4.8113 11.9678 23 1 4.6189 5.4287 13.0050 24 1 6.5165 3.9681 12.6220 25 1 6.1457 5.8787 11.1755 26 6 3.1684 3.6638 6.3603 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.3955 1.7179 -2.1096 33 1 3.1592 4.1049 -1.3508 34 1 2.8832 4.2503 1.3069 35 1 2.2966 3.6096 3.2834 36 1 2.1409 1.5432 5.2023 37 1 0.4893 2.1029 4.8456 38 1 0.3135 3.9043 7.4058 39 1 1.2083 2.3259 7.4904 40 1 2.9615 2.5930 9.0775 41 1 4.6457 2.0946 11.9134 42 1 3.6641 2.6957 6.4335 43 1 3.7971 4.4291 5.9051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086273072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:39 Heat of formation + Delta-G solvation = 15.580505 kcal Electronic energy + Delta-G solvation = -22464.199746 eV Core-core repulsion = 19124.012158 eV Total energy + Delta-G solvation = -3340.187588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.34086 -40.50586 -39.51795 -36.15857 -35.31540 -34.69112 -32.26107 -30.69538 -30.22308 -28.26540 -26.45196 -25.83869 -24.53966 -23.49484 -22.41711 -21.40735 -20.85904 -20.15939 -19.06612 -18.72503 -17.15108 -17.02850 -16.61112 -16.32602 -16.10590 -15.65681 -15.49287 -15.27613 -14.94968 -14.73491 -14.58391 -14.27452 -13.49198 -13.39516 -13.23342 -13.20979 -13.11238 -13.01827 -12.91920 -12.85356 -12.65413 -12.20375 -12.14631 -12.07055 -11.58943 -11.55172 -11.13104 -10.95574 -10.79917 -10.15241 -9.67682 -9.13518 -8.97347 -7.94187 -5.22474 0.50269 1.47532 1.49362 1.57715 1.69893 1.86239 2.39041 2.40479 2.57304 3.37729 3.67578 3.74466 3.80429 3.82385 3.95768 4.09852 4.18123 4.26250 4.35592 4.37255 4.42565 4.46261 4.50564 4.56453 4.72518 4.77406 4.86528 4.98064 4.99067 5.05051 5.13282 5.20506 5.22936 5.30996 5.35228 5.42844 5.53382 5.73536 5.85576 6.05449 6.28284 6.36349 6.55306 7.18471 7.33606 8.12112 8.33806 9.29535 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031213 B = 0.002531 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.842984 B =11060.505726 C =11406.249012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.092 3.908 3 N -0.416 5.416 4 C 0.022 3.978 5 C -0.221 4.221 6 C -0.138 4.138 7 C -0.088 4.088 8 C 0.579 3.421 9 O -0.589 6.589 10 N -0.703 5.703 11 C 0.143 3.857 12 C -0.095 4.095 13 H 0.123 0.877 14 C -0.136 4.136 15 C 0.144 3.856 16 H 0.082 0.918 17 N -0.730 5.730 18 C -0.241 4.241 19 H 0.080 0.920 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.974 3.026 23 H -0.287 1.287 24 H -0.298 1.298 25 H -0.267 1.267 26 C -0.155 4.155 27 H 0.034 0.966 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.202 0.798 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.415 0.585 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.054 0.946 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 1.306 -28.774 29.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.028 4.028 3 N -0.090 5.090 4 C -0.113 4.113 5 C -0.244 4.244 6 C -0.165 4.165 7 C -0.201 4.201 8 C 0.368 3.632 9 O -0.472 6.472 10 N -0.355 5.355 11 C 0.019 3.981 12 C -0.114 4.114 13 H 0.141 0.859 14 C -0.175 4.175 15 C 0.034 3.966 16 H 0.100 0.900 17 N -0.368 5.368 18 C -0.373 4.373 19 H 0.098 0.902 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.803 3.197 23 H -0.214 1.214 24 H -0.225 1.225 25 H -0.192 1.192 26 C -0.195 4.195 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.139 0.861 31 H 0.097 0.903 32 H 0.218 0.782 33 H 0.182 0.818 34 H 0.177 0.823 35 H 0.252 0.748 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.426 0.301 -28.434 29.389 hybrid contribution 0.784 0.084 1.181 1.420 sum -6.642 0.385 -27.253 28.053 Atomic orbital electron populations 1.21998 0.93773 1.03690 1.01777 1.22118 0.96238 0.79292 1.05158 1.44298 1.46985 1.11987 1.05685 1.22685 1.03021 0.93021 0.92597 1.21186 1.09871 0.98402 0.94960 1.21719 1.02360 0.95707 0.96700 1.20044 1.17870 0.94447 0.87727 1.17385 0.76794 0.84465 0.84532 1.90760 1.50728 1.20933 1.84733 1.45554 1.65550 1.16367 1.08000 1.21238 0.99631 0.97194 0.80011 1.22476 0.96960 0.98412 0.93571 0.85891 1.23324 0.98711 1.00810 0.94687 1.21957 0.92770 0.96783 0.85059 0.89959 1.42642 1.58702 1.10203 1.25229 1.19745 1.21742 0.93838 1.01987 0.90232 1.25613 1.03488 0.97392 1.00791 1.69827 1.50880 1.13169 1.28542 0.85133 0.78016 0.77698 0.78896 1.21367 1.22509 1.19209 1.23741 0.96170 1.00868 0.98748 0.94637 0.91104 0.89339 0.86113 0.90308 0.78165 0.81836 0.82263 0.74778 0.93500 0.91473 0.90141 0.91509 0.79685 0.94123 0.92768 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 10.23 71.98 0.74 -1.71 16 2 C 0.09 1.55 6.14 86.38 0.53 2.08 16 3 N -0.42 -8.02 2.76 -511.01 -1.41 -9.43 16 4 C 0.02 0.31 11.37 83.48 0.95 1.26 16 5 C -0.22 -3.26 10.81 22.01 0.24 -3.02 16 6 C -0.14 -2.49 10.35 22.57 0.23 -2.26 16 7 C -0.09 -2.02 6.89 40.35 0.28 -1.75 16 8 C 0.58 15.90 7.77 86.45 0.67 16.57 16 9 O -0.59 -20.01 14.51 -4.34 -0.06 -20.07 16 10 N -0.70 -16.30 5.54 -467.08 -2.59 -18.89 16 11 C 0.14 3.72 5.52 86.38 0.48 4.19 16 12 C -0.10 -2.35 3.75 -10.27 -0.04 -2.39 16 13 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 14 C -0.14 -4.16 7.39 31.12 0.23 -3.93 16 15 C 0.14 5.44 4.48 45.52 0.20 5.65 16 16 H 0.08 3.00 8.10 -2.39 -0.02 2.98 16 17 N -0.73 -37.09 5.40 -320.43 -1.73 -38.82 16 18 C -0.24 -13.42 9.97 84.04 0.84 -12.58 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 21 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 22 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C -0.15 -4.98 7.43 31.12 0.23 -4.75 16 27 H 0.03 0.78 7.85 -2.39 -0.02 0.76 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.12 1.15 8.12 -2.39 -0.02 1.13 16 31 H 0.08 1.78 6.62 -2.38 -0.02 1.76 16 32 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.16 2.14 7.45 -2.91 -0.02 2.12 16 35 H 0.42 7.27 7.37 -92.71 -0.68 6.59 16 36 H 0.05 1.47 7.84 -2.39 -0.02 1.45 16 37 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.07 2.25 8.08 -2.39 -0.02 2.24 16 40 H 0.37 20.54 7.93 -92.71 -0.73 19.80 16 41 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.05 2.03 7.90 -2.38 -0.02 2.01 16 43 H 0.07 2.01 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -73.57 358.11 2.15 -71.41 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.41 Total: 34.65 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 6.04 Total: -6.89 kcal Atomic # 7 Polarization: -122.12 SS G_CDS: -5.45 Total: -127.57 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.06 Total: -20.07 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -73.57 2.15 -71.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086273072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.995 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds