Wall clock time and date at job start Tue Mar 31 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47049 * 2 1 4 4 C 1.35526 * 125.67918 * 260.92487 * 3 2 1 5 5 C 1.35453 * 108.87041 * 179.73885 * 4 3 2 6 6 C 1.39831 * 107.86859 * 0.02562 * 5 4 3 7 7 C 1.37655 * 125.67490 * 80.62427 * 3 2 1 8 8 C 1.46680 * 126.23011 * 0.25452 * 7 3 2 9 9 O 1.21692 * 120.00386 * 5.42679 * 8 7 3 10 10 N 1.34781 * 119.99555 * 185.42157 * 8 7 3 11 11 C 1.46496 * 119.99629 * 185.17389 * 10 8 7 12 12 C 1.53008 * 109.47047 * 179.97438 * 11 10 8 13 13 H 1.09002 * 112.84888 * 316.20323 * 12 11 10 14 14 C 1.53779 * 113.61148 * 87.50248 * 12 11 10 15 15 C 1.53781 * 87.08274 * 139.98197 * 14 12 11 16 16 H 1.08994 * 113.61658 * 220.02219 * 15 14 12 17 17 N 1.46504 * 113.68710 * 89.12358 * 15 14 12 18 18 C 1.36940 * 119.99393 * 107.47183 * 17 15 14 19 19 H 1.08001 * 120.00195 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99650 * 179.97438 * 18 17 15 21 21 N 1.31614 * 119.99980 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99875 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47329 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47146 * 119.99930 * 22 20 18 25 25 H 1.48505 * 109.47145 * 240.00067 * 22 20 18 26 26 C 1.53777 * 113.61545 * 185.00086 * 12 11 10 27 27 H 1.09005 * 109.46915 * 59.99697 * 1 2 3 28 28 H 1.09000 * 109.47271 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47091 * 299.99734 * 1 2 3 30 30 H 1.08999 * 109.47091 * 240.00266 * 2 1 3 31 31 H 1.08998 * 109.47168 * 120.00544 * 2 1 3 32 32 H 1.07997 * 125.56823 * 359.73983 * 4 3 2 33 33 H 1.08010 * 126.06731 * 180.02562 * 5 4 3 34 34 H 1.07995 * 126.46320 * 180.02562 * 6 5 4 35 35 H 0.97000 * 120.00255 * 5.17786 * 10 8 7 36 36 H 1.09001 * 109.47644 * 299.99918 * 11 10 8 37 37 H 1.09000 * 109.47445 * 60.00343 * 11 10 8 38 38 H 1.09006 * 113.61617 * 254.53319 * 14 12 11 39 39 H 1.09003 * 113.61757 * 25.43631 * 14 12 11 40 40 H 0.96992 * 120.00450 * 287.46971 * 17 15 14 41 41 H 0.97002 * 119.99958 * 180.02562 * 21 20 18 42 42 H 1.09000 * 113.61435 * 334.56569 * 26 12 11 43 43 H 1.08995 * 113.61335 * 105.39331 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4455 2.0686 -1.0871 5 6 2.8141 3.3136 -0.7012 6 6 2.6118 3.4125 0.6788 7 6 2.1142 2.1988 1.1033 8 6 1.7531 1.8433 2.4798 9 8 1.4164 0.7045 2.7458 10 7 1.7943 2.7779 3.4500 11 6 1.5443 2.3991 4.8429 12 6 1.6510 3.6375 5.7352 13 1 2.5083 4.2640 5.4889 14 6 0.3325 4.4180 5.8658 15 6 0.6850 4.6109 7.3502 16 1 -0.1708 4.5146 8.0183 17 7 1.4810 5.8120 7.6148 18 6 0.9077 6.8908 8.2335 19 1 -0.1314 6.8563 8.5260 20 6 1.6620 8.0286 8.4847 21 7 2.9282 8.0708 8.1278 22 14 0.8798 9.5005 9.3280 23 1 -0.5445 9.2020 9.6244 24 1 1.5995 9.7850 10.5955 25 1 0.9625 10.6843 8.4352 26 6 1.5251 3.3279 7.2362 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.4856 1.6862 -2.0963 33 1 3.1963 4.0919 -1.3452 34 1 2.8073 4.2770 1.2958 35 1 1.9895 3.7013 3.2260 36 1 0.5447 1.9733 4.9299 37 1 2.2823 1.6609 5.1569 38 1 0.3169 5.3474 5.2963 39 1 -0.5551 3.8063 5.7038 40 1 2.4141 5.8431 7.3518 41 1 3.4554 8.8658 8.3037 42 1 0.9636 2.4181 7.4488 43 1 2.4726 3.3758 7.7728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086552978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:43 Heat of formation + Delta-G solvation = 37.576577 kcal Electronic energy + Delta-G solvation = -22634.839394 eV Core-core repulsion = 19295.605627 eV Total energy + Delta-G solvation = -3339.233767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.54397 -39.34829 -38.29071 -34.95188 -34.11110 -33.16823 -30.46219 -29.56420 -29.46734 -27.04930 -25.05533 -23.90872 -23.71990 -22.54076 -21.60047 -20.63290 -19.62980 -18.40980 -17.89655 -17.23033 -16.05597 -15.75524 -15.59773 -15.04945 -14.77926 -14.49610 -14.14574 -14.04520 -13.91750 -13.59067 -13.19225 -12.89724 -12.65266 -12.52978 -12.42731 -12.25873 -12.13250 -11.91354 -11.47978 -11.36722 -11.04411 -10.86113 -10.48889 -10.19159 -10.11643 -9.82352 -9.69875 -9.47675 -9.04095 -8.90829 -8.89275 -8.33774 -7.00531 -5.81336 -3.10321 1.37897 2.49475 2.60944 3.34061 3.36644 3.41384 3.47373 3.49439 4.45464 4.55387 4.68495 4.77704 4.80608 5.02402 5.05210 5.08672 5.18884 5.23298 5.24511 5.42059 5.45063 5.56321 5.62762 5.70656 5.83949 5.86807 5.92190 5.94874 6.05247 6.11204 6.21433 6.37381 6.40601 6.57897 6.63712 6.75145 6.84515 6.90211 7.04323 7.05646 7.53455 7.69171 8.19198 8.37895 9.48683 10.06204 10.40426 11.41174 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.002812 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.278392 B = 9954.904716 C =10632.692078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.408 5.408 4 C 0.011 3.989 5 C -0.208 4.208 6 C -0.141 4.141 7 C -0.050 4.050 8 C 0.585 3.415 9 O -0.555 6.555 10 N -0.711 5.711 11 C 0.134 3.866 12 C -0.120 4.120 13 H 0.094 0.906 14 C -0.169 4.169 15 C 0.167 3.833 16 H 0.062 0.938 17 N -0.706 5.706 18 C -0.241 4.241 19 H 0.073 0.927 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.148 4.148 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.166 0.834 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.405 0.595 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.077 0.923 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 -15.020 -18.064 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.082 5.082 4 C -0.124 4.124 5 C -0.232 4.232 6 C -0.167 4.167 7 C -0.163 4.163 8 C 0.373 3.627 9 O -0.436 6.436 10 N -0.362 5.362 11 C 0.011 3.989 12 C -0.139 4.139 13 H 0.112 0.888 14 C -0.210 4.210 15 C 0.055 3.945 16 H 0.080 0.920 17 N -0.345 5.345 18 C -0.373 4.373 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.187 4.187 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.183 0.817 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.240 0.760 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.206 -16.065 -17.693 24.000 hybrid contribution 0.138 1.350 0.031 1.357 sum -2.068 -14.715 -17.663 23.082 Atomic orbital electron populations 1.22069 0.94037 1.03010 1.02934 1.22008 0.96036 0.79653 1.04655 1.44067 1.46492 1.11502 1.06130 1.21995 1.05086 0.93511 0.91855 1.20830 1.09692 0.97188 0.95481 1.21425 1.03443 0.96043 0.95794 1.20118 1.14931 0.92772 0.88524 1.17011 0.77329 0.84974 0.83395 1.90765 1.49092 1.20240 1.83467 1.45735 1.71519 1.11564 1.07376 1.21500 1.01203 0.97468 0.78688 1.22721 1.00193 0.95668 0.95283 0.88791 1.23893 0.95015 0.99549 1.02501 1.21052 0.93787 0.86623 0.93025 0.91975 1.42180 1.10859 1.11487 1.69925 1.19336 0.95195 0.92312 1.30410 0.90945 1.24765 0.95916 0.98443 1.01790 1.69668 1.06676 1.29122 1.52561 0.86105 0.78286 0.82853 0.78866 1.20497 1.21837 1.21829 1.23444 1.01587 0.99563 0.94131 0.92445 0.90773 0.91352 0.89474 0.87819 0.81660 0.84052 0.83750 0.76000 0.91420 0.91784 0.91451 0.91399 0.78098 0.93481 0.90472 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 10.16 37.16 0.38 -1.04 16 2 C 0.10 0.88 6.11 -4.04 -0.02 0.85 16 3 N -0.41 -4.43 2.76 -112.87 -0.31 -4.75 16 4 C 0.01 0.10 11.36 -16.91 -0.19 -0.09 16 5 C -0.21 -2.06 10.81 -39.98 -0.43 -2.49 16 6 C -0.14 -1.59 10.35 -39.12 -0.40 -1.99 16 7 C -0.05 -0.63 6.88 -81.98 -0.56 -1.19 16 8 C 0.59 8.24 7.77 -12.85 -0.10 8.14 16 9 O -0.56 -8.98 14.24 5.20 0.07 -8.91 16 10 N -0.71 -9.19 5.53 -61.62 -0.34 -9.53 16 11 C 0.13 1.81 5.52 -4.04 -0.02 1.79 16 12 C -0.12 -1.78 3.63 -89.81 -0.33 -2.11 16 13 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 14 C -0.17 -2.79 7.43 -25.92 -0.19 -2.98 16 15 C 0.17 3.24 4.56 -67.11 -0.31 2.93 16 16 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 17 N -0.71 -17.27 5.31 -52.63 -0.28 -17.55 16 18 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 22 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 C -0.15 -2.34 7.39 -25.92 -0.19 -2.53 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.78 7.57 -51.93 -0.39 0.39 16 30 H 0.09 0.53 8.11 -51.93 -0.42 0.11 16 31 H 0.10 1.11 6.75 -51.93 -0.35 0.76 16 32 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.14 1.41 7.49 -52.49 -0.39 1.02 16 35 H 0.40 4.69 7.42 -40.82 -0.30 4.39 16 36 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 40 H 0.39 9.95 7.90 -40.82 -0.32 9.62 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -31.89 357.50 -9.16 -41.06 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -6.77 Total: 12.10 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.62 Total: -7.94 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.21 Total: -58.80 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.07 Total: -8.91 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.89 -9.16 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086552978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.634 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds