Wall clock time and date at job start Tue Mar 31 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47049 * 2 1 4 4 C 1.35526 * 125.67918 * 260.92487 * 3 2 1 5 5 C 1.35453 * 108.87041 * 179.73885 * 4 3 2 6 6 C 1.39831 * 107.86859 * 0.02562 * 5 4 3 7 7 C 1.37655 * 125.67490 * 80.62427 * 3 2 1 8 8 C 1.46680 * 126.23011 * 0.25452 * 7 3 2 9 9 O 1.21692 * 120.00386 * 5.42679 * 8 7 3 10 10 N 1.34781 * 119.99555 * 185.42157 * 8 7 3 11 11 C 1.46496 * 119.99629 * 185.17389 * 10 8 7 12 12 C 1.53008 * 109.47047 * 179.97438 * 11 10 8 13 13 H 1.09002 * 112.84888 * 316.20323 * 12 11 10 14 14 C 1.53779 * 113.61148 * 87.50248 * 12 11 10 15 15 C 1.53781 * 87.08274 * 139.98197 * 14 12 11 16 16 H 1.08994 * 113.61658 * 220.02219 * 15 14 12 17 17 N 1.46504 * 113.68710 * 89.12358 * 15 14 12 18 18 C 1.36940 * 119.99393 * 107.47183 * 17 15 14 19 19 H 1.08001 * 120.00195 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99650 * 179.97438 * 18 17 15 21 21 N 1.31614 * 119.99980 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99875 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47329 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47146 * 119.99930 * 22 20 18 25 25 H 1.48505 * 109.47145 * 240.00067 * 22 20 18 26 26 C 1.53777 * 113.61545 * 185.00086 * 12 11 10 27 27 H 1.09005 * 109.46915 * 59.99697 * 1 2 3 28 28 H 1.09000 * 109.47271 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47091 * 299.99734 * 1 2 3 30 30 H 1.08999 * 109.47091 * 240.00266 * 2 1 3 31 31 H 1.08998 * 109.47168 * 120.00544 * 2 1 3 32 32 H 1.07997 * 125.56823 * 359.73983 * 4 3 2 33 33 H 1.08010 * 126.06731 * 180.02562 * 5 4 3 34 34 H 1.07995 * 126.46320 * 180.02562 * 6 5 4 35 35 H 0.97000 * 120.00255 * 5.17786 * 10 8 7 36 36 H 1.09001 * 109.47644 * 299.99918 * 11 10 8 37 37 H 1.09000 * 109.47445 * 60.00343 * 11 10 8 38 38 H 1.09006 * 113.61617 * 254.53319 * 14 12 11 39 39 H 1.09003 * 113.61757 * 25.43631 * 14 12 11 40 40 H 0.96992 * 120.00450 * 287.46971 * 17 15 14 41 41 H 0.97002 * 119.99958 * 180.02562 * 21 20 18 42 42 H 1.09000 * 113.61435 * 334.56569 * 26 12 11 43 43 H 1.08995 * 113.61335 * 105.39331 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4455 2.0686 -1.0871 5 6 2.8141 3.3136 -0.7012 6 6 2.6118 3.4125 0.6788 7 6 2.1142 2.1988 1.1033 8 6 1.7531 1.8433 2.4798 9 8 1.4164 0.7045 2.7458 10 7 1.7943 2.7779 3.4500 11 6 1.5443 2.3991 4.8429 12 6 1.6510 3.6375 5.7352 13 1 2.5083 4.2640 5.4889 14 6 0.3325 4.4180 5.8658 15 6 0.6850 4.6109 7.3502 16 1 -0.1708 4.5146 8.0183 17 7 1.4810 5.8120 7.6148 18 6 0.9077 6.8908 8.2335 19 1 -0.1314 6.8563 8.5260 20 6 1.6620 8.0286 8.4847 21 7 2.9282 8.0708 8.1278 22 14 0.8798 9.5005 9.3280 23 1 -0.5445 9.2020 9.6244 24 1 1.5995 9.7850 10.5955 25 1 0.9625 10.6843 8.4352 26 6 1.5251 3.3279 7.2362 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.4856 1.6862 -2.0963 33 1 3.1963 4.0919 -1.3452 34 1 2.8073 4.2770 1.2958 35 1 1.9895 3.7013 3.2260 36 1 0.5447 1.9733 4.9299 37 1 2.2823 1.6609 5.1569 38 1 0.3169 5.3474 5.2963 39 1 -0.5551 3.8063 5.7038 40 1 2.4141 5.8431 7.3518 41 1 3.4554 8.8658 8.3037 42 1 0.9636 2.4181 7.4488 43 1 2.4726 3.3758 7.7728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086552978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:42 Heat of formation + Delta-G solvation = 17.792457 kcal Electronic energy + Delta-G solvation = -22635.697297 eV Core-core repulsion = 19295.605627 eV Total energy + Delta-G solvation = -3340.091671 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.35296 -40.54648 -39.56651 -36.12449 -35.26610 -34.67014 -32.16223 -30.68429 -30.22272 -28.29959 -26.43475 -25.71846 -24.54237 -23.70813 -22.79609 -21.42106 -20.66893 -19.71471 -19.32753 -18.72570 -17.13211 -16.84176 -16.57937 -16.56530 -15.95820 -15.63047 -15.53953 -15.23927 -14.84259 -14.68037 -14.65427 -14.41311 -13.76164 -13.46213 -13.29654 -13.20037 -13.11553 -12.95093 -12.91379 -12.84608 -12.65052 -12.14896 -12.12774 -12.04490 -11.55219 -11.48238 -11.10488 -10.91418 -10.77686 -10.13892 -9.69111 -9.15026 -8.99523 -7.95000 -5.23234 0.48538 1.48610 1.48737 1.58929 1.69524 1.84309 2.37677 2.41547 2.56145 3.37743 3.68944 3.75274 3.78464 3.81807 3.93973 4.10581 4.15463 4.17235 4.32876 4.37771 4.40897 4.45023 4.48780 4.71380 4.73983 4.77846 4.86554 4.92977 4.99225 5.11132 5.14969 5.18056 5.27789 5.29747 5.35295 5.48195 5.54688 5.66374 5.83398 6.03149 6.28926 6.35885 6.51799 7.15348 7.33900 8.10932 8.33316 9.28505 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.002812 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.278392 B = 9954.904716 C =10632.692078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.095 3.905 3 N -0.414 5.414 4 C 0.026 3.974 5 C -0.223 4.223 6 C -0.144 4.144 7 C -0.086 4.086 8 C 0.582 3.418 9 O -0.583 6.583 10 N -0.709 5.709 11 C 0.145 3.855 12 C -0.103 4.103 13 H 0.082 0.918 14 C -0.154 4.154 15 C 0.144 3.856 16 H 0.060 0.940 17 N -0.720 5.720 18 C -0.241 4.241 19 H 0.076 0.924 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.294 1.294 25 H -0.294 1.294 26 C -0.133 4.133 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.034 0.966 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.205 0.795 33 H 0.161 0.839 34 H 0.150 0.850 35 H 0.410 0.590 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.106 0.894 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 -15.972 -19.791 25.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.026 4.026 3 N -0.088 5.088 4 C -0.110 4.110 5 C -0.247 4.247 6 C -0.171 4.171 7 C -0.199 4.199 8 C 0.371 3.629 9 O -0.466 6.466 10 N -0.360 5.360 11 C 0.022 3.978 12 C -0.122 4.122 13 H 0.100 0.900 14 C -0.195 4.195 15 C 0.034 3.966 16 H 0.078 0.922 17 N -0.358 5.358 18 C -0.373 4.373 19 H 0.094 0.906 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.191 1.191 24 H -0.221 1.221 25 H -0.221 1.221 26 C -0.172 4.172 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.053 0.947 30 H 0.141 0.859 31 H 0.100 0.900 32 H 0.221 0.779 33 H 0.179 0.821 34 H 0.168 0.832 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.207 0.793 41 H 0.060 0.940 42 H 0.124 0.876 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.970 -17.045 -19.420 26.010 hybrid contribution 0.331 1.575 0.495 1.684 sum -2.640 -15.470 -18.926 24.586 Atomic orbital electron populations 1.22011 0.93944 1.03748 1.01676 1.22129 0.96094 0.79023 1.05326 1.44302 1.46410 1.12016 1.06065 1.22672 1.02519 0.93004 0.92815 1.21175 1.10141 0.98322 0.95036 1.21688 1.02715 0.95815 0.96885 1.20044 1.17426 0.94008 0.88433 1.17279 0.76789 0.84590 0.84196 1.90739 1.50553 1.21251 1.84021 1.45680 1.71362 1.11829 1.07083 1.21322 1.01324 0.96434 0.78760 1.22501 0.98776 0.95731 0.95144 0.89996 1.23723 0.96835 0.99313 0.99610 1.21376 0.94103 0.86450 0.94628 0.92161 1.42315 1.10806 1.12580 1.70126 1.19703 0.95323 0.93066 1.29182 0.90574 1.25546 0.96529 1.01258 1.03440 1.69814 1.08002 1.29624 1.54498 0.85094 0.78001 0.79397 0.77394 1.19068 1.22131 1.22092 1.23343 1.00760 0.98723 0.94414 0.91430 0.89095 0.94674 0.85887 0.90014 0.77866 0.82108 0.83191 0.75348 0.91273 0.91648 0.93392 0.89115 0.79326 0.94014 0.87555 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 10.16 71.98 0.73 -1.79 16 2 C 0.09 1.55 6.11 86.38 0.53 2.08 16 3 N -0.41 -8.35 2.76 -511.02 -1.41 -9.76 16 4 C 0.03 0.40 11.36 83.48 0.95 1.34 16 5 C -0.22 -3.94 10.81 22.01 0.24 -3.70 16 6 C -0.14 -3.13 10.35 22.57 0.23 -2.89 16 7 C -0.09 -2.14 6.88 40.35 0.28 -1.86 16 8 C 0.58 16.44 7.77 86.45 0.67 17.11 16 9 O -0.58 -19.07 14.24 -4.32 -0.06 -19.13 16 10 N -0.71 -18.15 5.53 -467.07 -2.58 -20.74 16 11 C 0.14 3.76 5.52 86.38 0.48 4.24 16 12 C -0.10 -2.98 3.63 -10.27 -0.04 -3.01 16 13 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 14 C -0.15 -4.98 7.43 31.12 0.23 -4.75 16 15 C 0.14 5.52 4.56 45.52 0.21 5.73 16 16 H 0.06 2.31 8.10 -2.39 -0.02 2.29 16 17 N -0.72 -35.68 5.31 -320.43 -1.70 -37.39 16 18 C -0.24 -13.25 9.97 84.03 0.84 -12.42 16 19 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 21 N -0.97 -58.75 13.06 21.65 0.28 -58.47 16 22 Si 0.97 45.87 29.55 68.60 2.03 47.90 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 26 C -0.13 -4.07 7.39 31.12 0.23 -3.84 16 27 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.03 0.80 7.57 -2.39 -0.02 0.78 16 30 H 0.12 1.10 8.11 -2.39 -0.02 1.08 16 31 H 0.08 1.73 6.75 -2.39 -0.02 1.71 16 32 H 0.20 1.42 8.06 -2.91 -0.02 1.39 16 33 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.15 2.88 7.49 -2.91 -0.02 2.86 16 35 H 0.41 9.49 7.42 -92.71 -0.69 8.80 16 36 H 0.07 1.81 7.84 -2.39 -0.02 1.80 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.09 2.54 7.90 -2.39 -0.02 2.52 16 40 H 0.37 19.85 7.90 -92.71 -0.73 19.12 16 41 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 42 H 0.11 2.66 8.10 -2.39 -0.02 2.64 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -69.79 357.50 2.18 -67.60 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -0.41 Total: 37.57 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 6.04 Total: -7.59 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -5.41 Total: -126.35 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.06 Total: -19.13 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -69.79 2.18 -67.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086552978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.396 kcal (2) G-P(sol) polarization free energy of solvation -69.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds