Wall clock time and date at job start Tue Mar 31 2020 07:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35534 * 125.67702 * 2 1 4 4 C 1.35458 * 108.86726 * 180.26190 * 3 2 1 5 5 C 1.39833 * 107.86617 * 359.76531 * 4 3 2 6 6 C 1.37652 * 125.67767 * 179.86048 * 2 1 3 7 7 C 1.46679 * 126.23270 * 0.02562 * 6 2 1 8 8 O 1.21693 * 119.99959 * 358.14300 * 7 6 2 9 9 N 1.34777 * 120.00076 * 178.13953 * 7 6 2 10 10 C 1.46490 * 120.00140 * 175.20303 * 9 7 6 11 11 C 1.53004 * 109.47423 * 180.02562 * 10 9 7 12 12 H 1.09011 * 110.53459 * 307.60904 * 11 10 9 13 13 C 1.54894 * 110.48778 * 70.21670 * 11 10 9 14 14 C 1.54889 * 102.74771 * 156.62540 * 13 11 10 15 15 C 1.54273 * 104.19357 * 322.06091 * 14 13 11 16 16 H 1.09005 * 110.06945 * 142.91659 * 15 14 13 17 17 N 1.46502 * 110.03285 * 264.32534 * 15 14 13 18 18 C 1.36937 * 119.99832 * 272.16848 * 17 15 14 19 19 H 1.08000 * 120.00236 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00038 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00125 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99972 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47414 * 89.99769 * 22 20 18 24 24 H 1.48502 * 109.47263 * 209.99922 * 22 20 18 25 25 H 1.48506 * 109.47183 * 329.99821 * 22 20 18 26 26 C 1.53871 * 106.59932 * 23.60938 * 15 14 13 27 27 H 1.08998 * 109.47151 * 265.88465 * 1 2 3 28 28 H 1.08995 * 109.47066 * 25.88919 * 1 2 3 29 29 H 1.09005 * 109.46993 * 145.89096 * 1 2 3 30 30 H 1.07998 * 125.56435 * 0.06097 * 3 2 1 31 31 H 1.07998 * 126.06031 * 179.74575 * 4 3 2 32 32 H 1.07998 * 126.45518 * 179.97438 * 5 4 3 33 33 H 0.97007 * 119.99579 * 355.20086 * 9 7 6 34 34 H 1.09004 * 109.47701 * 60.00035 * 10 9 7 35 35 H 1.08999 * 109.46951 * 299.99878 * 10 9 7 36 36 H 1.09000 * 110.75535 * 274.94277 * 13 11 10 37 37 H 1.09000 * 110.75051 * 38.31419 * 13 11 10 38 38 H 1.08999 * 110.48554 * 203.38583 * 14 13 11 39 39 H 1.08995 * 110.59883 * 80.79193 * 14 13 11 40 40 H 0.96993 * 119.99854 * 92.16802 * 17 15 14 41 41 H 0.97006 * 119.99831 * 179.97438 * 21 20 18 42 42 H 1.08994 * 110.03362 * 240.70991 * 26 15 14 43 43 H 1.09008 * 110.02872 * 119.28572 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7092 -0.0059 5 6 3.5780 -0.6888 -0.0042 6 6 2.2678 -1.1182 0.0027 7 6 1.8124 -2.5124 0.0056 8 8 0.6222 -2.7637 0.0399 9 7 2.7121 -3.5153 -0.0298 10 6 2.2638 -4.9057 0.0790 11 6 3.4745 -5.8388 0.0120 12 1 4.0791 -5.6181 -0.8679 13 6 4.3262 -5.7152 1.2998 14 6 5.0785 -7.0684 1.3432 15 6 4.0399 -8.0948 0.8452 16 1 4.5278 -8.8544 0.2345 17 7 3.3686 -8.7232 1.9857 18 6 3.9075 -9.8398 2.5671 19 1 4.8276 -10.2569 2.1851 20 6 3.2718 -10.4350 3.6480 21 7 3.7900 -11.5079 4.2071 22 14 1.6808 -9.7131 4.3092 23 1 0.5274 -10.3320 3.6079 24 1 1.5801 -9.9876 5.7651 25 1 1.6701 -8.2459 4.0801 26 6 3.0201 -7.3129 -0.0012 27 1 -0.3633 -0.0737 1.0250 28 1 -0.3633 0.9245 -0.4487 29 1 -0.3633 -0.8509 -0.5763 30 1 1.9082 2.1236 0.0009 31 1 4.4132 1.3611 -0.0112 32 1 4.4583 -1.3144 -0.0081 33 1 3.6565 -3.3164 -0.1274 34 1 1.5833 -5.1335 -0.7415 35 1 1.7482 -5.0479 1.0288 36 1 5.0283 -4.8852 1.2204 37 1 3.6876 -5.6000 2.1756 38 1 5.3864 -7.3012 2.3626 39 1 5.9430 -7.0480 0.6798 40 1 2.5425 -8.3484 2.3290 41 1 3.3459 -11.9236 4.9628 42 1 2.0259 -7.4010 0.4365 43 1 3.0137 -7.6926 -1.0229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086646564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:36 Heat of formation + Delta-G solvation = 16.376317 kcal Electronic energy + Delta-G solvation = -22792.900947 eV Core-core repulsion = 19452.747868 eV Total energy + Delta-G solvation = -3340.153079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60818 -39.40389 -38.13117 -35.11460 -33.54161 -32.92041 -31.11044 -30.02135 -28.74299 -27.52812 -26.77092 -24.60359 -22.82484 -22.42196 -20.77887 -20.35081 -19.54728 -19.26576 -18.08748 -17.51154 -16.26353 -15.97240 -15.92213 -15.24611 -14.93863 -14.49697 -14.36172 -13.97324 -13.69140 -13.50357 -13.34368 -13.05908 -12.71809 -12.68151 -12.56734 -12.33705 -12.28151 -11.85728 -11.35872 -10.90364 -10.79196 -10.62754 -10.46747 -10.38480 -10.32762 -10.11405 -9.92347 -9.56630 -9.21772 -9.03133 -8.88928 -8.48234 -7.23212 -5.75486 -3.10317 1.24437 2.38824 2.46979 3.19157 3.23866 3.39475 3.42890 3.47366 4.50634 4.55296 4.60953 4.69201 4.77740 4.87002 4.95270 4.99256 5.10334 5.13697 5.32580 5.42016 5.50082 5.57500 5.65982 5.72941 5.76721 5.86322 5.90685 5.99064 6.03189 6.09635 6.23723 6.29101 6.32397 6.48277 6.53544 6.66888 6.69594 6.81385 6.90741 7.01424 7.36329 8.02732 8.04603 8.44410 9.23529 9.96381 10.16297 11.43002 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025004 B = 0.003040 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.532430 B = 9208.183290 C = 9679.702027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.412 5.412 3 C 0.011 3.989 4 C -0.208 4.208 5 C -0.142 4.142 6 C -0.051 4.051 7 C 0.586 3.414 8 O -0.552 6.552 9 N -0.713 5.713 10 C 0.129 3.871 11 C -0.104 4.104 12 H 0.079 0.921 13 C -0.115 4.115 14 C -0.146 4.146 15 C 0.179 3.821 16 H 0.058 0.942 17 N -0.745 5.745 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.123 4.123 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.168 0.832 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.403 0.597 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.069 0.931 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.854 26.083 -11.623 28.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.084 5.084 3 C -0.124 4.124 4 C -0.232 4.232 5 C -0.168 4.168 6 C -0.165 4.165 7 C 0.373 3.627 8 O -0.432 6.432 9 N -0.364 5.364 10 C 0.006 3.994 11 C -0.123 4.123 12 H 0.097 0.903 13 C -0.153 4.153 14 C -0.186 4.186 15 C 0.070 3.930 16 H 0.076 0.924 17 N -0.388 5.388 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.713 3.287 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.162 4.162 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.185 0.815 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.238 0.762 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.989 25.616 -11.521 28.246 hybrid contribution -0.664 0.642 0.649 1.129 sum -3.653 26.258 -10.872 28.654 Atomic orbital electron populations 1.22243 0.76064 1.04714 1.04267 1.43876 1.06869 1.05024 1.52656 1.22038 0.90767 0.91490 1.08133 1.20833 0.96017 0.95043 1.11292 1.21370 0.94439 0.95560 1.05433 1.20114 0.90496 0.87664 1.18206 1.17000 0.85695 0.83552 0.76424 1.90791 1.16106 1.85032 1.51297 1.45671 1.10293 1.06214 1.74199 1.21549 0.96963 0.78516 1.02392 1.22263 0.95506 0.95272 0.99308 0.90298 1.22534 0.98176 0.97944 0.96616 1.23086 0.98175 0.95016 1.02339 1.20776 0.91160 0.92725 0.88386 0.92421 1.42914 1.27624 1.32396 1.35877 1.19096 1.06903 1.01114 1.10086 0.89213 1.24668 0.98587 0.97512 0.98444 1.69703 1.40643 1.22129 1.25823 0.86576 0.84912 0.78780 0.78419 1.21102 1.21808 1.20310 1.22487 1.00421 0.92715 1.00613 0.90499 0.89919 0.88185 0.81466 0.83965 0.83821 0.76239 0.91340 0.91115 0.92594 0.91544 0.90701 0.92822 0.80680 0.93108 0.91270 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 10.44 59.85 0.62 1.17 16 2 N -0.41 -4.12 3.16 -120.23 -0.38 -4.50 16 3 C 0.01 0.09 11.37 -16.91 -0.19 -0.10 16 4 C -0.21 -1.75 10.81 -39.98 -0.43 -2.18 16 5 C -0.14 -1.34 10.35 -39.12 -0.40 -1.75 16 6 C -0.05 -0.58 6.89 -81.98 -0.56 -1.15 16 7 C 0.59 7.65 7.78 -12.85 -0.10 7.55 16 8 O -0.55 -8.81 14.79 5.20 0.08 -8.74 16 9 N -0.71 -7.89 5.43 -61.62 -0.33 -8.23 16 10 C 0.13 1.58 4.96 -4.05 -0.02 1.56 16 11 C -0.10 -1.25 2.89 -88.96 -0.26 -1.51 16 12 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 13 C -0.12 -1.54 6.19 -24.74 -0.15 -1.70 16 14 C -0.15 -2.38 6.54 -25.07 -0.16 -2.54 16 15 C 0.18 3.30 3.55 -66.81 -0.24 3.06 16 16 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 17 N -0.75 -17.32 4.88 -52.34 -0.26 -17.58 16 18 C -0.24 -6.77 10.44 -15.06 -0.16 -6.93 16 19 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 20 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 21 N -0.94 -29.46 13.97 55.49 0.78 -28.69 16 22 Si 0.88 22.34 27.74 -169.99 -4.71 17.62 16 23 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 26 C -0.12 -1.81 6.14 -25.62 -0.16 -1.96 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 29 H 0.10 0.98 6.61 -51.93 -0.34 0.63 16 30 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.14 1.04 7.45 -52.49 -0.39 0.65 16 33 H 0.40 3.49 7.35 -40.82 -0.30 3.19 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.00 8.02 -51.93 -0.42 0.58 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.01 7.96 -51.93 -0.41 0.59 16 38 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.36 8.33 5.38 -40.82 -0.22 8.11 16 41 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 42 H 0.07 1.08 7.31 -51.93 -0.38 0.70 16 43 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -34.17 350.22 -8.56 -42.73 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.70 Total: 8.57 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.31 Total: -6.47 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.19 Total: -58.99 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.08 Total: -8.74 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.17 -8.56 -42.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086646564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.104 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds