Wall clock time and date at job start Tue Mar 31 2020 07:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35534 * 125.67702 * 2 1 4 4 C 1.35458 * 108.86726 * 180.26190 * 3 2 1 5 5 C 1.39833 * 107.86617 * 359.76531 * 4 3 2 6 6 C 1.37652 * 125.67767 * 179.86048 * 2 1 3 7 7 C 1.46679 * 126.23270 * 0.02562 * 6 2 1 8 8 O 1.21693 * 119.99959 * 358.14300 * 7 6 2 9 9 N 1.34777 * 120.00076 * 178.13953 * 7 6 2 10 10 C 1.46490 * 120.00140 * 175.20303 * 9 7 6 11 11 C 1.53004 * 109.47423 * 180.02562 * 10 9 7 12 12 H 1.09011 * 110.53459 * 307.60904 * 11 10 9 13 13 C 1.54894 * 110.48778 * 70.21670 * 11 10 9 14 14 C 1.54889 * 102.74771 * 156.62540 * 13 11 10 15 15 C 1.54273 * 104.19357 * 322.06091 * 14 13 11 16 16 H 1.09005 * 110.06945 * 142.91659 * 15 14 13 17 17 N 1.46502 * 110.03285 * 264.32534 * 15 14 13 18 18 C 1.36937 * 119.99832 * 272.16848 * 17 15 14 19 19 H 1.08000 * 120.00236 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00038 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00125 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99972 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47414 * 89.99769 * 22 20 18 24 24 H 1.48502 * 109.47263 * 209.99922 * 22 20 18 25 25 H 1.48506 * 109.47183 * 329.99821 * 22 20 18 26 26 C 1.53871 * 106.59932 * 23.60938 * 15 14 13 27 27 H 1.08998 * 109.47151 * 265.88465 * 1 2 3 28 28 H 1.08995 * 109.47066 * 25.88919 * 1 2 3 29 29 H 1.09005 * 109.46993 * 145.89096 * 1 2 3 30 30 H 1.07998 * 125.56435 * 0.06097 * 3 2 1 31 31 H 1.07998 * 126.06031 * 179.74575 * 4 3 2 32 32 H 1.07998 * 126.45518 * 179.97438 * 5 4 3 33 33 H 0.97007 * 119.99579 * 355.20086 * 9 7 6 34 34 H 1.09004 * 109.47701 * 60.00035 * 10 9 7 35 35 H 1.08999 * 109.46951 * 299.99878 * 10 9 7 36 36 H 1.09000 * 110.75535 * 274.94277 * 13 11 10 37 37 H 1.09000 * 110.75051 * 38.31419 * 13 11 10 38 38 H 1.08999 * 110.48554 * 203.38583 * 14 13 11 39 39 H 1.08995 * 110.59883 * 80.79193 * 14 13 11 40 40 H 0.96993 * 119.99854 * 92.16802 * 17 15 14 41 41 H 0.97006 * 119.99831 * 179.97438 * 21 20 18 42 42 H 1.08994 * 110.03362 * 240.70991 * 26 15 14 43 43 H 1.09008 * 110.02872 * 119.28572 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7092 -0.0059 5 6 3.5780 -0.6888 -0.0042 6 6 2.2678 -1.1182 0.0027 7 6 1.8124 -2.5124 0.0056 8 8 0.6222 -2.7637 0.0399 9 7 2.7121 -3.5153 -0.0298 10 6 2.2638 -4.9057 0.0790 11 6 3.4745 -5.8388 0.0120 12 1 4.0791 -5.6181 -0.8679 13 6 4.3262 -5.7152 1.2998 14 6 5.0785 -7.0684 1.3432 15 6 4.0399 -8.0948 0.8452 16 1 4.5278 -8.8544 0.2345 17 7 3.3686 -8.7232 1.9857 18 6 3.9075 -9.8398 2.5671 19 1 4.8276 -10.2569 2.1851 20 6 3.2718 -10.4350 3.6480 21 7 3.7900 -11.5079 4.2071 22 14 1.6808 -9.7131 4.3092 23 1 0.5274 -10.3320 3.6079 24 1 1.5801 -9.9876 5.7651 25 1 1.6701 -8.2459 4.0801 26 6 3.0201 -7.3129 -0.0012 27 1 -0.3633 -0.0737 1.0250 28 1 -0.3633 0.9245 -0.4487 29 1 -0.3633 -0.8509 -0.5763 30 1 1.9082 2.1236 0.0009 31 1 4.4132 1.3611 -0.0112 32 1 4.4583 -1.3144 -0.0081 33 1 3.6565 -3.3164 -0.1274 34 1 1.5833 -5.1335 -0.7415 35 1 1.7482 -5.0479 1.0288 36 1 5.0283 -4.8852 1.2204 37 1 3.6876 -5.6000 2.1756 38 1 5.3864 -7.3012 2.3626 39 1 5.9430 -7.0480 0.6798 40 1 2.5425 -8.3484 2.3290 41 1 3.3459 -11.9236 4.9628 42 1 2.0259 -7.4010 0.4365 43 1 3.0137 -7.6926 -1.0229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086646564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:35 Heat of formation + Delta-G solvation = -6.639294 kcal Electronic energy + Delta-G solvation = -22793.898979 eV Core-core repulsion = 19452.747868 eV Total energy + Delta-G solvation = -3341.151111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.29623 -40.39410 -39.36003 -36.41143 -35.07974 -33.73090 -32.93348 -31.08808 -29.76066 -28.91109 -27.38348 -25.83152 -24.70076 -23.29893 -21.43368 -21.41502 -20.84838 -20.38662 -19.52058 -18.81718 -17.32333 -16.87544 -16.78492 -16.48001 -16.29573 -15.85495 -15.61590 -15.05022 -14.77304 -14.52718 -14.40791 -14.25335 -14.11483 -13.95553 -13.36706 -13.21947 -13.17636 -13.09526 -12.89233 -12.55154 -12.23924 -12.13306 -11.90663 -11.76778 -11.70381 -11.55210 -11.41788 -11.07901 -10.94059 -10.18557 -9.68226 -9.26474 -9.16350 -8.02239 -5.33486 0.47787 1.36329 1.38160 1.45321 1.69794 1.83911 2.36566 2.41899 2.47411 3.28532 3.58912 3.66806 3.74848 3.85928 3.97970 4.04756 4.20104 4.35250 4.41181 4.49857 4.50288 4.55967 4.59657 4.66363 4.71111 4.77014 4.81970 4.91934 5.05955 5.12925 5.18556 5.23067 5.28210 5.34821 5.43910 5.53086 5.60977 5.81549 5.83056 6.02387 6.23666 6.32366 6.52990 7.09946 7.16034 7.89249 8.05822 9.19724 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025004 B = 0.003040 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.532430 B = 9208.183290 C = 9679.702027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.423 5.423 3 C 0.021 3.979 4 C -0.222 4.222 5 C -0.135 4.135 6 C -0.092 4.092 7 C 0.580 3.420 8 O -0.593 6.593 9 N -0.701 5.701 10 C 0.136 3.864 11 C -0.085 4.085 12 H 0.111 0.889 13 C -0.108 4.108 14 C -0.141 4.141 15 C 0.165 3.835 16 H 0.046 0.954 17 N -0.750 5.750 18 C -0.223 4.223 19 H 0.058 0.942 20 C -0.066 4.066 21 N -0.986 5.986 22 Si 0.950 3.050 23 H -0.279 1.279 24 H -0.297 1.297 25 H -0.257 1.257 26 C -0.118 4.118 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.202 0.798 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.416 0.584 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.362 0.638 41 H 0.256 0.744 42 H 0.058 0.942 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 29.654 -13.040 32.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.096 5.096 3 C -0.115 4.115 4 C -0.245 4.245 5 C -0.162 4.162 6 C -0.205 4.205 7 C 0.370 3.630 8 O -0.476 6.476 9 N -0.353 5.353 10 C 0.012 3.988 11 C -0.104 4.104 12 H 0.129 0.871 13 C -0.145 4.145 14 C -0.181 4.181 15 C 0.057 3.943 16 H 0.064 0.936 17 N -0.393 5.393 18 C -0.354 4.354 19 H 0.076 0.924 20 C -0.257 4.257 21 N -0.637 5.637 22 Si 0.778 3.222 23 H -0.206 1.206 24 H -0.224 1.224 25 H -0.181 1.181 26 C -0.157 4.157 27 H 0.092 0.908 28 H 0.135 0.865 29 H 0.095 0.905 30 H 0.219 0.781 31 H 0.182 0.818 32 H 0.181 0.819 33 H 0.254 0.746 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.195 0.805 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.838 29.232 -12.988 32.113 hybrid contribution -0.577 -0.411 1.006 1.230 sum -3.415 28.821 -11.982 31.399 Atomic orbital electron populations 1.22283 0.75558 1.05466 1.03995 1.44129 1.07489 1.05237 1.52783 1.22718 0.90668 0.92414 1.05681 1.21221 0.97049 0.94893 1.11338 1.21738 0.94241 0.96545 1.03680 1.20086 0.91660 0.87253 1.21466 1.17349 0.85312 0.84630 0.75716 1.90764 1.17734 1.85700 1.53361 1.45504 1.10831 1.05364 1.73568 1.21352 0.96877 0.79297 1.01252 1.22132 0.95288 0.93207 0.99792 0.87122 1.22487 0.98299 0.97208 0.96555 1.22940 0.98626 0.95914 1.00603 1.21120 0.92639 0.93261 0.87281 0.93627 1.42966 1.27907 1.31446 1.36997 1.19075 1.05322 1.01723 1.09305 0.92382 1.25443 1.02520 0.98353 0.99410 1.69877 1.42704 1.24225 1.26872 0.85473 0.80499 0.79076 0.77102 1.20558 1.22401 1.18147 1.22401 0.98555 0.94065 1.00680 0.90838 0.86549 0.90484 0.78089 0.81750 0.81932 0.74632 0.91494 0.93257 0.89314 0.93532 0.94196 0.90387 0.80473 0.93481 0.92313 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.44 127.77 1.33 2.35 16 2 N -0.42 -7.70 3.16 -534.31 -1.69 -9.39 16 3 C 0.02 0.27 11.37 83.48 0.95 1.22 16 4 C -0.22 -2.99 10.81 22.01 0.24 -2.75 16 5 C -0.14 -2.20 10.35 22.57 0.23 -1.96 16 6 C -0.09 -1.96 6.89 40.35 0.28 -1.68 16 7 C 0.58 14.69 7.78 86.45 0.67 15.37 16 8 O -0.59 -19.11 14.79 -4.33 -0.06 -19.18 16 9 N -0.70 -14.13 5.43 -467.09 -2.53 -16.66 16 10 C 0.14 3.09 4.96 86.38 0.43 3.52 16 11 C -0.09 -1.79 2.89 -9.72 -0.03 -1.82 16 12 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 13 C -0.11 -2.61 6.19 31.89 0.20 -2.41 16 14 C -0.14 -4.39 6.54 31.67 0.21 -4.19 16 15 C 0.16 5.93 3.55 45.72 0.16 6.10 16 16 H 0.05 1.74 8.09 -2.38 -0.02 1.72 16 17 N -0.75 -34.91 4.88 -319.50 -1.56 -36.47 16 18 C -0.22 -12.79 10.44 84.03 0.88 -11.91 16 19 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 20 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 21 N -0.99 -64.18 13.97 21.65 0.30 -63.87 16 22 Si 0.95 46.88 27.74 68.60 1.90 48.78 16 23 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 24 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 25 H -0.26 -11.62 6.52 99.48 0.65 -10.97 16 26 C -0.12 -3.22 6.14 31.31 0.19 -3.03 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.12 0.86 8.13 -2.39 -0.02 0.84 16 29 H 0.08 1.53 6.61 -2.38 -0.02 1.51 16 30 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 31 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 32 H 0.16 1.80 7.45 -2.91 -0.02 1.78 16 33 H 0.42 5.89 7.35 -92.70 -0.68 5.21 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.35 8.02 -2.39 -0.02 1.33 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.33 7.96 -2.39 -0.02 1.31 16 38 H 0.04 1.52 8.04 -2.39 -0.02 1.50 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.36 16.51 5.38 -92.71 -0.50 16.01 16 41 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 42 H 0.06 1.75 7.31 -2.39 -0.02 1.73 16 43 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -77.60 350.22 2.34 -75.26 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -0.23 Total: 26.23 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 6.21 Total: -4.70 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -5.48 Total: -126.40 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.06 Total: -19.18 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.90 Total: 48.78 kcal Total: -77.60 2.34 -75.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086646564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.619 kcal (2) G-P(sol) polarization free energy of solvation -77.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds