Wall clock time and date at job start Tue Mar 31 2020 07:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36449 * 124.85123 * 2 1 4 4 C 1.34488 * 108.85360 * 180.02562 * 3 2 1 5 5 C 1.46681 * 106.33666 * 0.02562 * 4 3 2 6 6 C 1.47265 * 126.94329 * 180.02562 * 5 4 3 7 7 O 1.21623 * 120.00009 * 180.02562 * 6 5 4 8 8 N 1.34776 * 119.99676 * 0.02562 * 6 5 4 9 9 C 1.46504 * 119.99527 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46689 * 180.02562 * 9 8 6 11 11 H 1.08996 * 110.01747 * 306.39071 * 10 9 8 12 12 C 1.53879 * 110.07613 * 67.81048 * 10 9 8 13 13 C 1.54267 * 106.60134 * 119.30250 * 12 10 9 14 14 C 1.54893 * 104.19282 * 23.60896 * 13 12 10 15 15 H 1.09003 * 110.91041 * 80.44593 * 14 13 12 16 16 N 1.46499 * 110.75633 * 203.74048 * 14 13 12 17 17 C 1.36935 * 119.99938 * 268.33095 * 16 14 13 18 18 H 1.08000 * 120.00518 * 359.72965 * 17 16 14 19 19 C 1.38817 * 119.99990 * 179.97438 * 17 16 14 20 20 N 1.31614 * 119.99892 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99858 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47174 * 89.99644 * 21 19 17 23 23 H 1.48494 * 109.46800 * 209.99692 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99394 * 21 19 17 25 25 C 1.54270 * 110.03030 * 184.99648 * 10 9 8 26 26 C 1.34668 * 124.85210 * 180.33586 * 2 1 3 27 27 H 1.09001 * 109.47102 * 89.98101 * 1 2 3 28 28 H 1.09005 * 109.47045 * 209.97598 * 1 2 3 29 29 H 1.08998 * 109.47041 * 329.97423 * 1 2 3 30 30 H 1.07997 * 125.56879 * 0.03773 * 3 2 1 31 31 H 1.07999 * 126.83006 * 179.97438 * 4 3 2 32 32 H 0.96995 * 120.00641 * 0.02562 * 8 6 5 33 33 H 1.08994 * 109.47473 * 60.00369 * 9 8 6 34 34 H 1.08997 * 109.47319 * 299.99768 * 9 8 6 35 35 H 1.08994 * 110.03346 * 238.59411 * 12 10 9 36 36 H 1.09005 * 110.02974 * 359.96966 * 12 10 9 37 37 H 1.08998 * 110.48796 * 264.93589 * 13 12 10 38 38 H 1.08998 * 110.48646 * 142.28496 * 13 12 10 39 39 H 0.96999 * 119.99984 * 88.33030 * 16 14 13 40 40 H 0.97005 * 119.99715 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.48043 * 98.37819 * 25 10 9 42 42 H 1.09000 * 110.48785 * 335.74031 * 25 10 9 43 43 H 1.07995 * 125.79926 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7491 -0.0006 5 6 3.5462 -0.7177 -0.0016 6 6 4.7284 -1.5958 -0.0019 7 8 4.5885 -2.8040 -0.0033 8 7 5.9653 -1.0606 -0.0008 9 6 7.1414 -1.9342 -0.0017 10 6 8.4109 -1.0802 0.0005 11 1 8.3818 -0.3663 -0.8226 12 6 8.5438 -0.3349 1.3402 13 6 9.8642 -0.8109 1.9803 14 6 10.7111 -1.3049 0.7812 15 1 11.1825 -0.4676 0.2666 16 7 11.7175 -2.2745 1.2208 17 6 12.9699 -1.8486 1.5747 18 1 13.2171 -0.7984 1.5256 19 6 13.9234 -2.7673 1.9918 20 7 15.1272 -2.3579 2.3315 21 14 13.4982 -4.5846 2.0696 22 1 13.8134 -5.2229 0.7664 23 1 14.2925 -5.2332 3.1435 24 1 12.0505 -4.7422 2.3607 25 6 9.6553 -1.9831 -0.1266 26 6 2.2345 -1.1051 -0.0065 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 1.8828 2.1373 0.0006 31 1 4.3980 1.4016 -0.0011 32 1 6.0769 -0.0971 0.0006 33 1 7.1270 -2.5620 -0.8926 34 1 7.1264 -2.5646 0.8873 35 1 8.5791 0.7406 1.1672 36 1 7.7033 -0.5810 1.9893 37 1 9.6775 -1.6276 2.6776 38 1 10.3635 0.0162 2.4849 39 1 11.4967 -3.2182 1.2612 40 1 15.7936 -2.9999 2.6226 41 1 10.0020 -2.0114 -1.1597 42 1 9.4348 -2.9891 0.2303 43 1 1.8767 -2.1240 -0.0128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086671252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:40 Heat of formation + Delta-G solvation = 14.973270 kcal Electronic energy + Delta-G solvation = -22308.556440 eV Core-core repulsion = 18968.342520 eV Total energy + Delta-G solvation = -3340.213920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.51070 -39.37172 -38.02359 -34.88188 -33.47034 -33.00079 -31.00628 -29.58824 -29.08190 -27.71711 -26.83603 -24.46029 -22.65293 -22.38367 -20.49368 -20.21006 -19.58586 -19.27288 -18.12543 -17.49141 -16.12181 -15.94964 -15.80319 -15.43217 -14.83837 -14.62575 -14.46676 -14.05702 -13.51211 -13.43254 -13.11348 -12.94900 -12.91754 -12.69347 -12.55774 -12.41608 -12.25387 -12.08313 -11.29147 -10.90258 -10.79856 -10.56737 -10.51734 -10.32344 -10.18072 -9.95931 -9.78763 -9.54119 -9.09562 -8.89407 -8.85605 -8.60965 -7.21039 -5.73368 -3.08223 1.57424 2.11656 2.43802 3.37437 3.42107 3.45643 3.49479 3.52143 4.25848 4.55540 4.61078 4.63239 4.64810 4.80151 4.87152 4.94405 4.97896 5.07855 5.15459 5.50823 5.55698 5.58443 5.65875 5.72503 5.76890 5.81002 5.90990 6.02378 6.09561 6.19990 6.30234 6.35701 6.41336 6.48505 6.52578 6.67993 6.70698 6.85431 6.86071 7.04465 7.61222 8.03982 8.34036 8.46415 9.25266 9.98181 10.18272 11.45009 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.040889 B = 0.002489 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.611492 B =11246.399949 C =11652.376398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.449 5.449 3 C -0.019 4.019 4 C -0.169 4.169 5 C -0.233 4.233 6 C 0.588 3.412 7 O -0.557 6.557 8 N -0.722 5.722 9 C 0.128 3.872 10 C -0.100 4.100 11 H 0.075 0.925 12 C -0.120 4.120 13 C -0.143 4.143 14 C 0.182 3.818 15 H 0.065 0.935 16 N -0.745 5.745 17 C -0.242 4.242 18 H 0.090 0.910 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.276 1.276 25 C -0.126 4.126 26 C 0.072 3.928 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.167 0.833 31 H 0.146 0.854 32 H 0.400 0.600 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.361 0.639 40 H 0.259 0.741 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.201 8.378 -6.201 32.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.125 5.125 3 C -0.145 4.145 4 C -0.193 4.193 5 C -0.243 4.243 6 C 0.377 3.623 7 O -0.437 6.437 8 N -0.373 5.373 9 C 0.005 3.995 10 C -0.120 4.120 11 H 0.094 0.906 12 C -0.158 4.158 13 C -0.184 4.184 14 C 0.072 3.928 15 H 0.083 0.917 16 N -0.386 5.386 17 C -0.372 4.372 18 H 0.108 0.892 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.202 1.202 25 C -0.165 4.165 26 C -0.063 4.063 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.184 0.816 31 H 0.164 0.836 32 H 0.234 0.766 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.194 0.806 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -31.407 7.670 -6.152 32.911 hybrid contribution -0.179 -0.766 0.186 0.808 sum -31.586 6.904 -5.966 32.878 Atomic orbital electron populations 1.22126 0.76870 1.04724 1.03579 1.43633 1.06799 1.05954 1.56089 1.21754 0.90597 0.91286 1.10862 1.22064 0.96251 0.93220 1.07732 1.20393 0.92627 0.93373 1.17868 1.17380 0.82436 0.86979 0.75535 1.90770 1.86690 1.14799 1.51415 1.45815 1.05429 1.10488 1.75558 1.21523 0.83088 0.92691 1.02236 1.21951 0.93766 0.97597 0.98655 0.90649 1.22209 0.98857 0.99166 0.95614 1.23033 0.94683 1.00766 0.99926 1.21144 0.87835 0.92169 0.91680 0.91742 1.42753 1.10786 1.04585 1.80501 1.19102 0.86356 0.95087 1.36667 0.89219 1.24683 0.95708 0.97479 1.01438 1.69704 1.03804 1.33414 1.51360 0.86550 0.77562 0.86933 0.77520 1.21092 1.21812 1.20242 1.22645 0.94284 0.98898 1.00720 1.21797 0.89859 0.91759 1.02864 0.90627 0.89558 0.89549 0.81615 0.83616 0.76599 0.91648 0.91340 0.92242 0.92229 0.92012 0.92143 0.80578 0.93122 0.91499 0.91505 0.80865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.19 11.03 59.84 0.66 0.85 16 2 N -0.45 -3.07 3.09 -124.53 -0.38 -3.45 16 3 C -0.02 -0.13 11.34 -16.82 -0.19 -0.32 16 4 C -0.17 -1.43 10.56 -37.50 -0.40 -1.83 16 5 C -0.23 -2.58 6.29 -103.35 -0.65 -3.23 16 6 C 0.59 8.03 7.81 -12.59 -0.10 7.94 16 7 O -0.56 -9.65 16.91 5.26 0.09 -9.56 16 8 N -0.72 -8.42 5.34 -61.43 -0.33 -8.75 16 9 C 0.13 1.64 4.69 -4.04 -0.02 1.62 16 10 C -0.10 -1.25 2.96 -89.50 -0.26 -1.52 16 11 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 12 C -0.12 -1.56 6.19 -25.61 -0.16 -1.72 16 13 C -0.14 -2.45 6.51 -25.07 -0.16 -2.62 16 14 C 0.18 3.46 3.56 -65.94 -0.23 3.22 16 15 H 0.06 1.26 8.09 -51.93 -0.42 0.84 16 16 N -0.75 -17.77 5.03 -51.50 -0.26 -18.03 16 17 C -0.24 -6.88 10.44 -15.06 -0.16 -7.03 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 19 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 20 N -0.93 -29.64 13.97 55.49 0.78 -28.87 16 21 Si 0.88 22.51 27.74 -169.99 -4.71 17.79 16 22 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 24 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 25 C -0.13 -1.94 5.98 -25.07 -0.15 -2.09 16 26 C 0.07 0.68 11.12 -16.84 -0.19 0.49 16 27 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 28 H 0.09 0.15 8.13 -51.93 -0.42 -0.27 16 29 H 0.09 0.10 8.13 -51.93 -0.42 -0.32 16 30 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.15 0.96 7.70 -52.49 -0.40 0.55 16 32 H 0.40 3.69 7.48 -40.82 -0.31 3.39 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.76 7.62 -51.93 -0.40 0.36 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.36 8.53 5.63 -40.82 -0.23 8.30 16 40 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.06 7.73 -51.93 -0.40 0.66 16 43 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -35.76 354.90 -8.40 -44.16 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.82 Total: 7.62 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.11 Total: -6.27 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.20 Total: -59.09 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.76 -8.40 -44.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086671252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.129 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds