Wall clock time and date at job start Tue Mar 31 2020 07:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36449 * 124.85123 * 2 1 4 4 C 1.34488 * 108.85360 * 180.02562 * 3 2 1 5 5 C 1.46681 * 106.33666 * 0.02562 * 4 3 2 6 6 C 1.47265 * 126.94329 * 180.02562 * 5 4 3 7 7 O 1.21623 * 120.00009 * 180.02562 * 6 5 4 8 8 N 1.34776 * 119.99676 * 0.02562 * 6 5 4 9 9 C 1.46504 * 119.99527 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46689 * 180.02562 * 9 8 6 11 11 H 1.08996 * 110.01747 * 306.39071 * 10 9 8 12 12 C 1.53879 * 110.07613 * 67.81048 * 10 9 8 13 13 C 1.54267 * 106.60134 * 119.30250 * 12 10 9 14 14 C 1.54893 * 104.19282 * 23.60896 * 13 12 10 15 15 H 1.09003 * 110.91041 * 80.44593 * 14 13 12 16 16 N 1.46499 * 110.75633 * 203.74048 * 14 13 12 17 17 C 1.36935 * 119.99938 * 268.33095 * 16 14 13 18 18 H 1.08000 * 120.00518 * 359.72965 * 17 16 14 19 19 C 1.38817 * 119.99990 * 179.97438 * 17 16 14 20 20 N 1.31614 * 119.99892 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99858 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47174 * 89.99644 * 21 19 17 23 23 H 1.48494 * 109.46800 * 209.99692 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99394 * 21 19 17 25 25 C 1.54270 * 110.03030 * 184.99648 * 10 9 8 26 26 C 1.34668 * 124.85210 * 180.33586 * 2 1 3 27 27 H 1.09001 * 109.47102 * 89.98101 * 1 2 3 28 28 H 1.09005 * 109.47045 * 209.97598 * 1 2 3 29 29 H 1.08998 * 109.47041 * 329.97423 * 1 2 3 30 30 H 1.07997 * 125.56879 * 0.03773 * 3 2 1 31 31 H 1.07999 * 126.83006 * 179.97438 * 4 3 2 32 32 H 0.96995 * 120.00641 * 0.02562 * 8 6 5 33 33 H 1.08994 * 109.47473 * 60.00369 * 9 8 6 34 34 H 1.08997 * 109.47319 * 299.99768 * 9 8 6 35 35 H 1.08994 * 110.03346 * 238.59411 * 12 10 9 36 36 H 1.09005 * 110.02974 * 359.96966 * 12 10 9 37 37 H 1.08998 * 110.48796 * 264.93589 * 13 12 10 38 38 H 1.08998 * 110.48646 * 142.28496 * 13 12 10 39 39 H 0.96999 * 119.99984 * 88.33030 * 16 14 13 40 40 H 0.97005 * 119.99715 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.48043 * 98.37819 * 25 10 9 42 42 H 1.09000 * 110.48785 * 335.74031 * 25 10 9 43 43 H 1.07995 * 125.79926 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7491 -0.0006 5 6 3.5462 -0.7177 -0.0016 6 6 4.7284 -1.5958 -0.0019 7 8 4.5885 -2.8040 -0.0033 8 7 5.9653 -1.0606 -0.0008 9 6 7.1414 -1.9342 -0.0017 10 6 8.4109 -1.0802 0.0005 11 1 8.3818 -0.3663 -0.8226 12 6 8.5438 -0.3349 1.3402 13 6 9.8642 -0.8109 1.9803 14 6 10.7111 -1.3049 0.7812 15 1 11.1825 -0.4676 0.2666 16 7 11.7175 -2.2745 1.2208 17 6 12.9699 -1.8486 1.5747 18 1 13.2171 -0.7984 1.5256 19 6 13.9234 -2.7673 1.9918 20 7 15.1272 -2.3579 2.3315 21 14 13.4982 -4.5846 2.0696 22 1 13.8134 -5.2229 0.7664 23 1 14.2925 -5.2332 3.1435 24 1 12.0505 -4.7422 2.3607 25 6 9.6553 -1.9831 -0.1266 26 6 2.2345 -1.1051 -0.0065 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 1.8828 2.1373 0.0006 31 1 4.3980 1.4016 -0.0011 32 1 6.0769 -0.0971 0.0006 33 1 7.1270 -2.5620 -0.8926 34 1 7.1264 -2.5646 0.8873 35 1 8.5791 0.7406 1.1672 36 1 7.7033 -0.5810 1.9893 37 1 9.6775 -1.6276 2.6776 38 1 10.3635 0.0162 2.4849 39 1 11.4967 -3.2182 1.2612 40 1 15.7936 -2.9999 2.6226 41 1 10.0020 -2.0114 -1.1597 42 1 9.4348 -2.9891 0.2303 43 1 1.8767 -2.1240 -0.0128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086671252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:39 Heat of formation + Delta-G solvation = -9.332167 kcal Electronic energy + Delta-G solvation = -22309.610403 eV Core-core repulsion = 18968.342520 eV Total energy + Delta-G solvation = -3341.267883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.09937 -40.41912 -39.29707 -36.36164 -34.96083 -33.66841 -32.92519 -30.53126 -29.98267 -29.05535 -27.52053 -25.66447 -24.50073 -23.22982 -21.59798 -21.02481 -20.77006 -20.30187 -19.54649 -18.79963 -17.22266 -16.89274 -16.62634 -16.46993 -16.27753 -15.88145 -15.60226 -15.03810 -14.77998 -14.41579 -14.30785 -14.16500 -14.01833 -13.88531 -13.36248 -13.27582 -13.10776 -13.02064 -12.92730 -12.67457 -12.31984 -12.10442 -11.94680 -11.83543 -11.69158 -11.49894 -11.25145 -10.94366 -10.93390 -10.08703 -9.48114 -9.27114 -9.25640 -8.01468 -5.33570 0.79349 1.38474 1.40683 1.47968 1.56148 1.94632 2.48830 2.49278 2.62323 3.29130 3.57790 3.68721 3.80418 4.00601 4.03879 4.11282 4.16459 4.33545 4.41705 4.48235 4.49563 4.62547 4.62659 4.66128 4.76188 4.76397 4.80025 4.92700 5.04294 5.07321 5.13478 5.17917 5.22399 5.39753 5.50762 5.56693 5.59184 5.79620 5.80432 6.09849 6.23967 6.37570 6.72220 7.09565 7.38150 7.87972 8.05707 9.20089 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.040889 B = 0.002489 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.611492 B =11246.399949 C =11652.376398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.444 5.444 3 C -0.011 4.011 4 C -0.183 4.183 5 C -0.267 4.267 6 C 0.583 3.417 7 O -0.605 6.605 8 N -0.710 5.710 9 C 0.134 3.866 10 C -0.084 4.084 11 H 0.102 0.898 12 C -0.108 4.108 13 C -0.141 4.141 14 C 0.168 3.832 15 H 0.057 0.943 16 N -0.750 5.750 17 C -0.226 4.226 18 H 0.058 0.942 19 C -0.067 4.067 20 N -0.984 5.984 21 Si 0.953 3.047 22 H -0.278 1.278 23 H -0.297 1.297 24 H -0.256 1.256 25 C -0.119 4.119 26 C 0.063 3.937 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.201 0.799 31 H 0.162 0.838 32 H 0.414 0.586 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.364 0.636 40 H 0.257 0.743 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.469 9.411 -6.999 36.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.118 5.118 3 C -0.138 4.138 4 C -0.206 4.206 5 C -0.277 4.277 6 C 0.373 3.627 7 O -0.489 6.489 8 N -0.361 5.361 9 C 0.010 3.990 10 C -0.103 4.103 11 H 0.120 0.880 12 C -0.146 4.146 13 C -0.181 4.181 14 C 0.059 3.941 15 H 0.075 0.925 16 N -0.392 5.392 17 C -0.357 4.357 18 H 0.076 0.924 19 C -0.258 4.258 20 N -0.635 5.635 21 Si 0.781 3.219 22 H -0.204 1.204 23 H -0.224 1.224 24 H -0.180 1.180 25 C -0.158 4.158 26 C -0.074 4.074 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.218 0.782 31 H 0.180 0.820 32 H 0.250 0.750 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.197 0.803 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -34.749 8.767 -6.971 36.510 hybrid contribution 0.749 -0.950 0.418 1.280 sum -34.000 7.817 -6.553 35.497 Atomic orbital electron populations 1.22444 0.74363 1.06275 1.04874 1.43939 1.08342 1.05209 1.54352 1.22331 0.90137 0.92560 1.08764 1.22316 0.97838 0.91965 1.08478 1.20394 0.92247 0.94585 1.20502 1.17845 0.83514 0.86718 0.74606 1.90732 1.87383 1.16871 1.53890 1.45663 1.04603 1.11059 1.74792 1.21343 0.83676 0.92728 1.01208 1.21824 0.92015 0.97201 0.99287 0.88022 1.22131 0.96429 1.00589 0.95436 1.22896 0.96496 0.99821 0.98877 1.21443 0.87843 0.91560 0.93209 0.92502 1.42796 1.10187 1.05603 1.80661 1.19075 0.88108 0.93691 1.34870 0.92357 1.25491 0.95683 1.02434 1.02240 1.69880 1.05152 1.34946 1.53531 0.85427 0.78243 0.80838 0.77385 1.20395 1.22379 1.18032 1.22552 0.94193 0.98889 1.00194 1.21915 0.89995 0.92718 1.02760 0.89418 0.88760 0.87387 0.78223 0.82033 0.74960 0.92172 0.93112 0.89778 0.91494 0.93524 0.93375 0.80302 0.93451 0.90547 0.91938 0.80777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.14 11.03 127.77 1.41 1.55 16 2 N -0.44 -4.94 3.09 -547.90 -1.69 -6.63 16 3 C -0.01 -0.12 11.34 83.12 0.94 0.83 16 4 C -0.18 -2.67 10.56 23.62 0.25 -2.42 16 5 C -0.27 -5.66 6.29 -19.04 -0.12 -5.78 16 6 C 0.58 15.70 7.81 86.62 0.68 16.38 16 7 O -0.61 -21.38 16.91 -4.10 -0.07 -21.45 16 8 N -0.71 -15.45 5.34 -466.52 -2.49 -17.94 16 9 C 0.13 3.25 4.69 86.38 0.40 3.66 16 10 C -0.08 -1.88 2.96 -10.07 -0.03 -1.91 16 11 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 12 C -0.11 -2.53 6.19 31.32 0.19 -2.34 16 13 C -0.14 -4.69 6.51 31.67 0.21 -4.48 16 14 C 0.17 6.26 3.56 46.28 0.16 6.42 16 15 H 0.06 2.21 8.09 -2.39 -0.02 2.19 16 16 N -0.75 -35.65 5.03 -316.85 -1.59 -37.25 16 17 C -0.23 -13.10 10.44 84.04 0.88 -12.22 16 18 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 19 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 20 N -0.98 -64.17 13.97 21.65 0.30 -63.86 16 21 Si 0.95 46.92 27.74 68.60 1.90 48.82 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 24 H -0.26 -11.54 6.52 99.48 0.65 -10.89 16 25 C -0.12 -3.46 5.98 31.67 0.19 -3.27 16 26 C 0.06 1.12 11.12 83.91 0.93 2.06 16 27 H 0.09 0.04 8.14 -2.39 -0.02 0.03 16 28 H 0.09 0.10 8.13 -2.38 -0.02 0.08 16 29 H 0.11 -0.17 8.13 -2.39 -0.02 -0.19 16 30 H 0.20 0.60 8.06 -2.91 -0.02 0.57 16 31 H 0.16 1.64 7.70 -2.91 -0.02 1.62 16 32 H 0.41 6.56 7.48 -92.71 -0.69 5.87 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.52 7.62 -2.38 -0.02 1.51 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.36 16.80 5.63 -92.71 -0.52 16.28 16 40 H 0.26 15.97 8.31 -92.70 -0.77 15.19 16 41 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.06 1.89 7.73 -2.39 -0.02 1.87 16 43 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -80.39 354.90 2.66 -77.73 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -0.27 Total: 25.69 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 6.57 Total: -5.12 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -5.47 Total: -125.68 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.07 Total: -21.45 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.90 Total: 48.82 kcal Total: -80.39 2.66 -77.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086671252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.398 kcal (2) G-P(sol) polarization free energy of solvation -80.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds