Wall clock time and date at job start Tue Mar 31 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47184 * 2 1 4 4 C 1.35533 * 125.67856 * 260.96437 * 3 2 1 5 5 C 1.35457 * 108.87066 * 179.73416 * 4 3 2 6 6 C 1.39833 * 107.86538 * 0.02562 * 5 4 3 7 7 C 1.37654 * 125.67733 * 80.65398 * 3 2 1 8 8 C 1.46676 * 126.23074 * 0.27046 * 7 3 2 9 9 O 1.21691 * 120.00403 * 5.42975 * 8 7 3 10 10 N 1.34783 * 120.00088 * 185.43415 * 8 7 3 11 11 C 1.46496 * 120.00519 * 185.15692 * 10 8 7 12 12 H 1.09007 * 110.63867 * 328.14553 * 11 10 8 13 13 C 1.55159 * 110.71573 * 91.47451 * 11 10 8 14 14 C 1.54917 * 101.57741 * 153.87129 * 13 11 10 15 15 N 1.47426 * 104.82885 * 322.98923 * 14 13 11 16 16 C 1.36945 * 125.64316 * 204.16686 * 15 14 13 17 17 H 1.07999 * 119.99509 * 179.97438 * 16 15 14 18 18 C 1.38805 * 120.00097 * 359.96122 * 16 15 14 19 19 N 1.31620 * 120.00361 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99718 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46991 * 90.00077 * 20 18 16 22 22 H 1.48506 * 109.46889 * 209.99713 * 20 18 16 23 23 H 1.48492 * 109.47224 * 329.99864 * 20 18 16 24 24 C 1.47015 * 108.70506 * 24.13005 * 15 14 13 25 25 H 1.08997 * 109.88806 * 239.52047 * 24 15 14 26 26 C 1.53005 * 110.01168 * 118.42897 * 24 15 14 27 27 H 1.08998 * 109.47099 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46988 * 299.99420 * 1 2 3 29 29 H 1.09000 * 109.47300 * 59.99915 * 1 2 3 30 30 H 1.09003 * 109.46739 * 240.00156 * 2 1 3 31 31 H 1.09002 * 109.47088 * 120.00576 * 2 1 3 32 32 H 1.07996 * 125.56586 * 359.74023 * 4 3 2 33 33 H 1.07999 * 126.06483 * 179.97438 * 5 4 3 34 34 H 1.08007 * 126.45810 * 180.02562 * 6 5 4 35 35 H 0.97001 * 119.99342 * 5.15859 * 10 8 7 36 36 H 1.09004 * 111.00560 * 271.94059 * 13 11 10 37 37 H 1.08994 * 111.00656 * 35.79676 * 13 11 10 38 38 H 1.09000 * 110.36473 * 204.15213 * 14 13 11 39 39 H 1.08993 * 110.46219 * 81.87938 * 14 13 11 40 40 H 0.96994 * 120.00084 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.46858 * 302.11569 * 26 24 15 42 42 H 1.09003 * 109.46759 * 62.11442 * 26 24 15 43 43 H 1.08992 * 109.47438 * 182.11631 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.4449 2.0688 -1.0873 5 6 2.8136 3.3138 -0.7014 6 6 2.6121 3.4124 0.6788 7 6 2.1148 2.1986 1.1033 8 6 1.7547 1.8428 2.4800 9 8 1.4184 0.7039 2.7460 10 7 1.7961 2.7773 3.4504 11 6 1.5467 2.3984 4.8434 12 1 0.8397 1.5704 4.8956 13 6 2.8746 2.0376 5.5602 14 6 2.5243 2.3462 7.0374 15 7 1.6668 3.5440 6.9795 16 6 1.4903 4.4487 7.9923 17 1 0.8380 5.2977 7.8503 18 6 2.1495 4.2745 9.2013 19 7 2.9438 3.2394 9.3747 20 14 1.9081 5.5083 10.5830 21 1 0.7639 5.0854 11.4300 22 1 3.1396 5.5719 11.4105 23 1 1.6289 6.8481 10.0070 24 6 1.0333 3.6068 5.6544 25 1 1.3116 4.5343 5.1539 26 6 -0.4881 3.5291 5.7971 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.4842 1.6866 -2.0966 33 1 3.1961 4.0918 -1.3453 34 1 2.8080 4.2769 1.2959 35 1 1.9911 3.7007 3.2263 36 1 3.1159 0.9829 5.4280 37 1 3.6910 2.6702 5.2120 38 1 3.4302 2.5552 7.6064 39 1 1.9817 1.5122 7.4825 40 1 3.4041 3.1175 10.2197 41 1 -0.7579 2.6082 6.3140 42 1 -0.8433 4.3853 6.3706 43 1 -0.9467 3.5385 4.8084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089040699.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:33 Heat of formation + Delta-G solvation = 36.789218 kcal Electronic energy + Delta-G solvation = -23630.371410 eV Core-core repulsion = 20291.103501 eV Total energy + Delta-G solvation = -3339.267909 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44836 -39.19867 -37.38254 -34.58424 -33.72767 -32.04466 -30.39529 -29.63535 -29.39940 -28.25652 -24.87902 -23.99114 -23.70186 -22.27561 -20.71601 -20.12325 -20.00642 -19.07904 -17.72056 -16.77634 -16.06444 -15.49902 -15.31733 -14.80065 -14.62796 -14.10936 -13.99249 -13.82795 -13.72223 -13.34699 -12.78400 -12.57302 -12.42918 -12.34729 -12.12952 -12.07791 -11.93360 -11.54990 -11.35675 -11.13265 -10.85961 -10.81858 -10.55025 -10.41271 -10.09047 -9.75359 -9.72287 -9.55571 -8.82992 -8.70598 -8.63286 -8.22276 -6.87071 -5.65062 -3.07921 1.50172 2.60382 2.69016 3.40122 3.44352 3.46828 3.49276 3.54058 4.48699 4.54923 4.81182 4.88267 4.89792 5.12050 5.26368 5.30714 5.31708 5.43130 5.51553 5.55722 5.63900 5.66170 5.83550 5.94951 5.98745 6.11156 6.14353 6.26765 6.32842 6.36458 6.53621 6.60103 6.69828 6.72928 6.88187 6.93125 7.12682 7.15590 7.52213 7.63142 7.76081 7.85629 8.34640 8.41224 9.21027 9.81962 10.45780 11.38307 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.003433 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.243648 B = 8153.065526 C = 8346.924644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.408 5.408 4 C 0.008 3.992 5 C -0.209 4.209 6 C -0.144 4.144 7 C -0.044 4.044 8 C 0.586 3.414 9 O -0.552 6.552 10 N -0.703 5.703 11 C 0.137 3.863 12 H 0.095 0.905 13 C -0.153 4.153 14 C 0.153 3.847 15 N -0.595 5.595 16 C -0.220 4.220 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.155 3.845 25 H 0.036 0.964 26 C -0.155 4.155 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.165 0.835 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.400 0.600 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.014 0.986 40 H 0.252 0.748 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.649 -3.091 -20.637 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.081 5.081 4 C -0.127 4.127 5 C -0.233 4.233 6 C -0.171 4.171 7 C -0.158 4.158 8 C 0.373 3.627 9 O -0.432 6.432 10 N -0.352 5.352 11 C 0.032 3.968 12 H 0.113 0.887 13 C -0.193 4.193 14 C 0.028 3.972 15 N -0.320 5.320 16 C -0.348 4.348 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.047 3.953 25 H 0.054 0.946 26 C -0.215 4.215 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.182 0.818 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.235 0.765 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.127 0.873 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.935 -4.248 -20.155 20.688 hybrid contribution -0.067 1.058 0.521 1.181 sum -2.002 -3.191 -19.634 19.992 Atomic orbital electron populations 1.22063 0.94049 1.03017 1.02887 1.22016 0.96031 0.79647 1.04703 1.44074 1.46408 1.11509 1.06121 1.21970 1.05351 0.93523 0.91844 1.20795 1.09857 0.97180 0.95455 1.21382 1.03865 0.96116 0.95687 1.20188 1.14403 0.92636 0.88584 1.16969 0.77365 0.85127 0.83190 1.90766 1.48968 1.20086 1.83409 1.45733 1.71116 1.11166 1.07204 1.22185 0.98339 0.98268 0.77963 0.88653 1.23415 0.96038 1.00212 0.99637 1.21948 0.97610 0.87756 0.89891 1.44484 1.51287 1.26694 1.09553 1.19030 1.22704 1.02138 0.90966 0.90438 1.24782 0.99702 0.98235 0.97846 1.69792 1.33346 1.29333 1.24475 0.86083 0.77066 0.80357 0.82038 1.21666 1.21685 1.20701 1.20985 0.91948 0.94247 0.88115 0.94607 1.22236 0.97660 1.02080 0.99482 0.90785 0.91276 0.92540 0.89541 0.87684 0.81760 0.84200 0.83892 0.76500 0.92093 0.91856 0.87310 0.96751 0.93705 0.92944 0.92708 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 10.16 37.16 0.38 -1.19 16 2 C 0.10 0.98 6.11 -4.04 -0.02 0.95 16 3 N -0.41 -4.80 2.76 -112.87 -0.31 -5.11 16 4 C 0.01 0.08 11.36 -16.91 -0.19 -0.11 16 5 C -0.21 -2.15 10.81 -39.98 -0.43 -2.58 16 6 C -0.14 -1.71 10.35 -39.12 -0.40 -2.12 16 7 C -0.04 -0.61 6.88 -81.98 -0.56 -1.17 16 8 C 0.59 9.33 7.77 -12.85 -0.10 9.23 16 9 O -0.55 -10.10 13.86 5.20 0.07 -10.03 16 10 N -0.70 -10.86 5.15 -53.34 -0.27 -11.13 16 11 C 0.14 2.52 2.89 -66.10 -0.19 2.33 16 12 H 0.10 1.88 7.19 -51.93 -0.37 1.51 16 13 C -0.15 -3.06 6.77 -24.58 -0.17 -3.22 16 14 C 0.15 3.73 5.89 -2.52 -0.01 3.71 16 15 N -0.60 -14.81 3.13 -162.58 -0.51 -15.32 16 16 C -0.22 -5.98 9.90 -15.06 -0.15 -6.12 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -26.59 10.09 55.49 0.56 -26.03 16 20 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.16 3.13 3.47 -66.96 -0.23 2.90 16 25 H 0.04 0.71 7.72 -51.93 -0.40 0.31 16 26 C -0.15 -2.91 9.14 37.16 0.34 -2.57 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.86 7.57 -51.93 -0.39 0.47 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 31 H 0.10 1.27 6.75 -51.93 -0.35 0.92 16 32 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.14 1.45 7.49 -52.48 -0.39 1.06 16 35 H 0.40 5.33 7.32 -40.82 -0.30 5.03 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.11 2.96 5.87 -51.93 -0.31 2.66 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 1.05 8.05 -51.93 -0.42 0.64 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -31.38 348.15 -8.79 -40.17 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.70 Total: 5.74 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.85 Total: -0.36 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.54 Total: -57.60 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.38 -8.79 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089040699.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.961 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds