Wall clock time and date at job start Tue Mar 31 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47184 * 2 1 4 4 C 1.35533 * 125.67856 * 260.96437 * 3 2 1 5 5 C 1.35457 * 108.87066 * 179.73416 * 4 3 2 6 6 C 1.39833 * 107.86538 * 0.02562 * 5 4 3 7 7 C 1.37654 * 125.67733 * 80.65398 * 3 2 1 8 8 C 1.46676 * 126.23074 * 0.27046 * 7 3 2 9 9 O 1.21691 * 120.00403 * 5.42975 * 8 7 3 10 10 N 1.34783 * 120.00088 * 185.43415 * 8 7 3 11 11 C 1.46496 * 120.00519 * 185.15692 * 10 8 7 12 12 H 1.09007 * 110.63867 * 328.14553 * 11 10 8 13 13 C 1.55159 * 110.71573 * 91.47451 * 11 10 8 14 14 C 1.54917 * 101.57741 * 153.87129 * 13 11 10 15 15 N 1.47426 * 104.82885 * 322.98923 * 14 13 11 16 16 C 1.36945 * 125.64316 * 204.16686 * 15 14 13 17 17 H 1.07999 * 119.99509 * 179.97438 * 16 15 14 18 18 C 1.38805 * 120.00097 * 359.96122 * 16 15 14 19 19 N 1.31620 * 120.00361 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99718 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46991 * 90.00077 * 20 18 16 22 22 H 1.48506 * 109.46889 * 209.99713 * 20 18 16 23 23 H 1.48492 * 109.47224 * 329.99864 * 20 18 16 24 24 C 1.47015 * 108.70506 * 24.13005 * 15 14 13 25 25 H 1.08997 * 109.88806 * 239.52047 * 24 15 14 26 26 C 1.53005 * 110.01168 * 118.42897 * 24 15 14 27 27 H 1.08998 * 109.47099 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46988 * 299.99420 * 1 2 3 29 29 H 1.09000 * 109.47300 * 59.99915 * 1 2 3 30 30 H 1.09003 * 109.46739 * 240.00156 * 2 1 3 31 31 H 1.09002 * 109.47088 * 120.00576 * 2 1 3 32 32 H 1.07996 * 125.56586 * 359.74023 * 4 3 2 33 33 H 1.07999 * 126.06483 * 179.97438 * 5 4 3 34 34 H 1.08007 * 126.45810 * 180.02562 * 6 5 4 35 35 H 0.97001 * 119.99342 * 5.15859 * 10 8 7 36 36 H 1.09004 * 111.00560 * 271.94059 * 13 11 10 37 37 H 1.08994 * 111.00656 * 35.79676 * 13 11 10 38 38 H 1.09000 * 110.36473 * 204.15213 * 14 13 11 39 39 H 1.08993 * 110.46219 * 81.87938 * 14 13 11 40 40 H 0.96994 * 120.00084 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.46858 * 302.11569 * 26 24 15 42 42 H 1.09003 * 109.46759 * 62.11442 * 26 24 15 43 43 H 1.08992 * 109.47438 * 182.11631 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.4449 2.0688 -1.0873 5 6 2.8136 3.3138 -0.7014 6 6 2.6121 3.4124 0.6788 7 6 2.1148 2.1986 1.1033 8 6 1.7547 1.8428 2.4800 9 8 1.4184 0.7039 2.7460 10 7 1.7961 2.7773 3.4504 11 6 1.5467 2.3984 4.8434 12 1 0.8397 1.5704 4.8956 13 6 2.8746 2.0376 5.5602 14 6 2.5243 2.3462 7.0374 15 7 1.6668 3.5440 6.9795 16 6 1.4903 4.4487 7.9923 17 1 0.8380 5.2977 7.8503 18 6 2.1495 4.2745 9.2013 19 7 2.9438 3.2394 9.3747 20 14 1.9081 5.5083 10.5830 21 1 0.7639 5.0854 11.4300 22 1 3.1396 5.5719 11.4105 23 1 1.6289 6.8481 10.0070 24 6 1.0333 3.6068 5.6544 25 1 1.3116 4.5343 5.1539 26 6 -0.4881 3.5291 5.7971 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.4842 1.6866 -2.0966 33 1 3.1961 4.0918 -1.3453 34 1 2.8080 4.2769 1.2959 35 1 1.9911 3.7007 3.2263 36 1 3.1159 0.9829 5.4280 37 1 3.6910 2.6702 5.2120 38 1 3.4302 2.5552 7.6064 39 1 1.9817 1.5122 7.4825 40 1 3.4041 3.1175 10.2197 41 1 -0.7579 2.6082 6.3140 42 1 -0.8433 4.3853 6.3706 43 1 -0.9467 3.5385 4.8084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089040699.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:33 Heat of formation + Delta-G solvation = 18.009623 kcal Electronic energy + Delta-G solvation = -23631.185754 eV Core-core repulsion = 20291.103501 eV Total energy + Delta-G solvation = -3340.082254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.33610 -40.56610 -38.95635 -35.79865 -34.93829 -33.80139 -32.08791 -31.00710 -30.20449 -29.73086 -26.52385 -25.83794 -24.51183 -23.46971 -22.03567 -21.62596 -21.31208 -20.27059 -18.74004 -18.67755 -17.50432 -16.75443 -16.50017 -16.30052 -15.80670 -15.56934 -15.47690 -14.95500 -14.82870 -14.55477 -14.35560 -14.01562 -13.72197 -13.44051 -13.27057 -13.16020 -13.08732 -12.93533 -12.83549 -12.75381 -12.60926 -12.28003 -12.11407 -12.09683 -11.97120 -11.58067 -11.45106 -11.00222 -10.72683 -10.07697 -9.65759 -9.12149 -8.89777 -7.74119 -5.19348 0.52147 1.49205 1.50770 1.59218 1.69375 1.88034 2.35140 2.41773 2.54695 3.36474 3.54853 3.82853 3.83522 3.86715 3.94603 4.12449 4.19390 4.21161 4.39654 4.48505 4.49061 4.51428 4.61282 4.66310 4.76823 4.79474 4.89363 4.92598 5.03510 5.10640 5.17741 5.21989 5.32528 5.34341 5.50401 5.59431 5.60002 5.80119 5.87938 6.06154 6.30864 6.39359 6.56773 7.11766 7.20151 7.79189 8.42863 9.27865 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.003433 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.243648 B = 8153.065526 C = 8346.924644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.094 3.906 3 N -0.415 5.415 4 C 0.025 3.975 5 C -0.221 4.221 6 C -0.139 4.139 7 C -0.085 4.085 8 C 0.585 3.415 9 O -0.584 6.584 10 N -0.695 5.695 11 C 0.156 3.844 12 H 0.082 0.918 13 C -0.138 4.138 14 C 0.158 3.842 15 N -0.613 5.613 16 C -0.228 4.228 17 H 0.085 0.915 18 C -0.068 4.068 19 N -0.951 5.951 20 Si 0.979 3.021 21 H -0.290 1.290 22 H -0.296 1.296 23 H -0.267 1.267 24 C 0.151 3.849 25 H 0.051 0.949 26 C -0.146 4.146 27 H 0.088 0.912 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.078 0.922 32 H 0.204 0.796 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.412 0.588 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.078 0.922 39 H -0.014 1.014 40 H 0.246 0.754 41 H 0.036 0.964 42 H 0.049 0.951 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 -1.970 -23.720 23.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.026 4.026 3 N -0.088 5.088 4 C -0.110 4.110 5 C -0.244 4.244 6 C -0.166 4.166 7 C -0.198 4.198 8 C 0.375 3.625 9 O -0.466 6.466 10 N -0.346 5.346 11 C 0.050 3.950 12 H 0.100 0.900 13 C -0.178 4.178 14 C 0.033 3.967 15 N -0.338 5.338 16 C -0.357 4.357 17 H 0.103 0.897 18 C -0.260 4.260 19 N -0.601 5.601 20 Si 0.807 3.193 21 H -0.217 1.217 22 H -0.222 1.222 23 H -0.191 1.191 24 C 0.044 3.956 25 H 0.069 0.931 26 C -0.205 4.205 27 H 0.107 0.893 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.142 0.858 31 H 0.096 0.904 32 H 0.221 0.779 33 H 0.182 0.818 34 H 0.172 0.828 35 H 0.249 0.751 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.004 0.996 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.189 -3.097 -23.278 23.585 hybrid contribution 0.003 0.692 1.343 1.511 sum -2.186 -2.404 -21.935 22.174 Atomic orbital electron populations 1.22002 0.93936 1.03662 1.01720 1.22109 0.96118 0.79205 1.05194 1.44290 1.46472 1.11930 1.06130 1.22694 1.02534 0.93089 0.92725 1.21172 1.10039 0.98232 0.94952 1.21701 1.02394 0.95674 0.96860 1.19952 1.17673 0.94202 0.87986 1.17335 0.76470 0.84503 0.84196 1.90748 1.50428 1.21354 1.84064 1.45494 1.71386 1.11915 1.05803 1.21724 0.96743 0.97070 0.79433 0.90010 1.23213 0.97156 1.00644 0.96795 1.21665 0.95905 0.86961 0.92188 1.44715 1.51968 1.26284 1.10872 1.19406 1.22113 1.02521 0.91629 0.89672 1.25607 1.00007 1.00132 1.00275 1.70039 1.34446 1.31071 1.24532 0.85067 0.76383 0.78827 0.78984 1.21750 1.22243 1.19133 1.21173 0.92602 0.95467 0.86325 0.93107 1.22116 0.96557 1.00986 1.00874 0.89324 0.94767 0.91143 0.85834 0.90361 0.77896 0.81798 0.82760 0.75076 0.91623 0.91113 0.90365 0.99630 0.94439 0.94505 0.93212 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.16 71.98 0.73 -2.07 16 2 C 0.09 1.74 6.11 86.38 0.53 2.26 16 3 N -0.41 -8.83 2.76 -511.02 -1.41 -10.25 16 4 C 0.03 0.40 11.36 83.48 0.95 1.34 16 5 C -0.22 -3.75 10.81 22.01 0.24 -3.51 16 6 C -0.14 -2.98 10.35 22.57 0.23 -2.75 16 7 C -0.09 -2.22 6.88 40.35 0.28 -1.94 16 8 C 0.59 18.46 7.77 86.45 0.67 19.13 16 9 O -0.58 -21.76 13.86 -4.32 -0.06 -21.82 16 10 N -0.70 -20.97 5.15 -440.87 -2.27 -23.24 16 11 C 0.16 5.74 2.89 46.18 0.13 5.88 16 12 H 0.08 3.28 7.19 -2.38 -0.02 3.27 16 13 C -0.14 -5.61 6.77 31.99 0.22 -5.39 16 14 C 0.16 8.03 5.89 86.86 0.51 8.54 16 15 N -0.61 -31.00 3.13 -668.27 -2.09 -33.09 16 16 C -0.23 -12.47 9.90 84.03 0.83 -11.63 16 17 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 18 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 19 N -0.95 -56.79 10.09 21.65 0.22 -56.57 16 20 Si 0.98 45.42 29.55 68.60 2.03 47.45 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 C 0.15 6.04 3.47 45.34 0.16 6.20 16 25 H 0.05 1.91 7.72 -2.39 -0.02 1.89 16 26 C -0.15 -5.39 9.14 71.98 0.66 -4.73 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.03 0.85 7.57 -2.39 -0.02 0.83 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.12 1.31 8.11 -2.39 -0.02 1.29 16 31 H 0.08 1.88 6.75 -2.39 -0.02 1.87 16 32 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.15 2.76 7.49 -2.91 -0.02 2.74 16 35 H 0.41 10.37 7.32 -92.71 -0.68 9.69 16 36 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 37 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.08 4.47 5.87 -2.39 -0.01 4.46 16 39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 40 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.86 8.05 -2.39 -0.02 1.84 16 43 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -70.17 348.15 3.33 -66.84 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.32 Total: 22.72 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 6.60 Total: 7.97 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -5.56 Total: -123.16 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.06 Total: -21.82 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -70.17 3.33 -66.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089040699.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.845 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds