Wall clock time and date at job start Tue Mar 31 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47168 * 2 1 4 4 C 1.35534 * 125.67653 * 265.45287 * 3 2 1 5 5 C 1.35450 * 108.87078 * 180.12895 * 4 3 2 6 6 C 1.39830 * 107.86370 * 359.62638 * 5 4 3 7 7 C 1.37646 * 125.67833 * 85.16490 * 3 2 1 8 8 C 1.46671 * 126.23632 * 0.03785 * 7 3 2 9 9 O 1.21697 * 119.99956 * 354.68450 * 8 7 3 10 10 N 1.34781 * 120.00446 * 174.68518 * 8 7 3 11 11 C 1.46503 * 120.00266 * 185.01450 * 10 8 7 12 12 C 1.53000 * 109.46823 * 180.02562 * 11 10 8 13 13 C 1.53785 * 113.61508 * 274.13459 * 12 11 10 14 14 C 1.53952 * 87.01667 * 220.05262 * 13 12 11 15 15 N 1.46498 * 113.53697 * 270.80860 * 14 13 12 16 16 C 1.36939 * 120.00318 * 252.49925 * 15 14 13 17 17 H 1.08005 * 119.99693 * 0.02562 * 16 15 14 18 18 C 1.38806 * 120.00408 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00442 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99884 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47200 * 90.00007 * 20 18 16 22 22 H 1.48497 * 109.47174 * 210.00026 * 20 18 16 23 23 H 1.48506 * 109.46887 * 330.00136 * 20 18 16 24 24 C 1.53780 * 87.11573 * 25.36437 * 14 13 12 25 25 H 1.09002 * 109.46984 * 60.00131 * 1 2 3 26 26 H 1.09002 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46677 * 300.00187 * 1 2 3 28 28 H 1.09000 * 109.47328 * 239.99501 * 2 1 3 29 29 H 1.09002 * 109.46984 * 119.99869 * 2 1 3 30 30 H 1.07998 * 125.56280 * 359.97438 * 4 3 2 31 31 H 1.08005 * 126.06330 * 179.89392 * 5 4 3 32 32 H 1.08007 * 126.45296 * 180.20963 * 6 5 4 33 33 H 0.97005 * 119.99747 * 5.01363 * 10 8 7 34 34 H 1.08994 * 109.46887 * 300.00024 * 11 10 8 35 35 H 1.08997 * 109.46658 * 59.99981 * 11 10 8 36 36 H 1.08993 * 112.84808 * 45.33448 * 12 11 10 37 37 H 1.09006 * 113.60845 * 334.57277 * 13 12 11 38 38 H 1.09000 * 113.61036 * 105.47107 * 13 12 11 39 39 H 1.09001 * 113.73818 * 139.94886 * 14 13 12 40 40 H 0.97006 * 119.99903 * 72.49647 * 15 14 13 41 41 H 0.97000 * 120.00199 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.61150 * 220.09283 * 24 14 13 43 43 H 1.08992 * 113.61601 * 89.18839 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3641 2.0973 -1.0975 5 6 2.7698 3.3292 -0.7069 6 6 2.6675 3.3928 0.6862 7 6 2.1971 2.1695 1.1141 8 6 1.9353 1.7791 2.5035 9 8 1.4287 0.6998 2.7471 10 7 2.2557 2.6157 3.5105 11 6 2.0966 2.1831 4.9011 12 6 2.5271 3.3127 5.8390 13 6 4.0367 3.3285 6.1320 14 6 3.6692 3.6788 7.5854 15 7 3.5565 5.1189 7.8295 16 6 4.5210 5.7684 8.5528 17 1 5.3651 5.2190 8.9429 18 6 4.4145 7.1330 8.7836 19 7 5.3412 7.7571 9.4792 20 14 2.9549 8.0833 8.1082 21 1 1.8567 8.0803 9.1079 22 1 3.3633 9.4828 7.8258 23 1 2.4844 7.4423 6.8540 24 6 2.3186 2.9899 7.3280 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.3252 1.7427 -2.1169 31 1 3.1078 4.1230 -1.3566 32 1 2.9115 4.2404 1.3096 33 1 2.5917 3.5044 3.3144 34 1 1.0516 1.9352 5.0871 35 1 2.7161 1.3046 5.0813 36 1 2.1296 4.2833 5.5428 37 1 4.5124 2.3536 6.0247 38 1 4.5739 4.1222 5.6130 39 1 4.2841 3.1705 8.3282 40 1 2.7986 5.6124 7.4788 41 1 5.2669 8.7108 9.6402 42 1 1.4710 3.5109 7.7732 43 1 2.3239 1.9225 7.5484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091366303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:17 Heat of formation + Delta-G solvation = 41.913123 kcal Electronic energy + Delta-G solvation = -22703.881827 eV Core-core repulsion = 19364.836107 eV Total energy + Delta-G solvation = -3339.045720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60200 -39.45845 -38.42356 -35.04091 -34.18949 -33.20657 -30.81480 -29.79543 -29.55174 -27.26604 -25.19133 -23.91677 -23.61651 -22.48407 -21.68905 -20.68549 -19.70974 -18.59957 -17.95277 -17.63162 -16.10839 -15.90992 -15.64531 -15.06708 -14.83740 -14.59732 -14.37835 -14.05466 -13.91224 -13.58455 -13.46556 -12.80259 -12.70243 -12.55621 -12.52501 -12.43944 -12.21447 -12.06382 -11.60594 -11.47620 -11.37441 -10.92515 -10.52178 -10.31857 -10.18410 -9.93501 -9.68104 -9.55190 -9.12827 -8.96623 -8.92754 -8.39596 -7.32053 -5.81244 -3.17576 1.31702 2.43817 2.54979 3.24616 3.31082 3.33713 3.36739 3.42524 4.41544 4.54642 4.60678 4.73241 4.75897 4.91433 4.93424 4.97667 5.07387 5.13463 5.17519 5.37393 5.37918 5.41923 5.49061 5.50998 5.74209 5.80631 5.84194 5.86274 5.89298 6.00075 6.10968 6.21783 6.31324 6.46755 6.56479 6.61527 6.72535 6.79054 6.88000 7.00145 7.44725 7.96590 8.11322 8.38428 9.16164 9.88383 10.07540 11.36856 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.003043 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.151147 B = 9199.547282 C = 9850.539623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.408 5.408 4 C 0.012 3.988 5 C -0.207 4.207 6 C -0.141 4.141 7 C -0.050 4.050 8 C 0.585 3.415 9 O -0.554 6.554 10 N -0.713 5.713 11 C 0.135 3.865 12 C -0.124 4.124 13 C -0.167 4.167 14 C 0.173 3.827 15 N -0.730 5.730 16 C -0.247 4.247 17 H 0.092 0.908 18 C 0.006 3.994 19 N -0.932 5.932 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.148 4.148 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.166 0.834 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.404 0.596 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.067 0.933 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.508 -14.288 -21.346 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.081 5.081 4 C -0.124 4.124 5 C -0.231 4.231 6 C -0.168 4.168 7 C -0.164 4.164 8 C 0.373 3.627 9 O -0.434 6.434 10 N -0.363 5.363 11 C 0.012 3.988 12 C -0.143 4.143 13 C -0.208 4.208 14 C 0.061 3.939 15 N -0.370 5.370 16 C -0.377 4.377 17 H 0.110 0.890 18 C -0.190 4.190 19 N -0.579 5.579 20 Si 0.714 3.286 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.188 4.188 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.121 0.879 30 H 0.184 0.816 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.239 0.761 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.773 -15.358 -20.937 27.408 hybrid contribution -0.826 1.328 -0.755 1.736 sum -9.599 -14.031 -21.692 27.559 Atomic orbital electron populations 1.22067 0.93994 1.03010 1.02938 1.22005 0.96072 0.79601 1.04646 1.44069 1.47219 1.11653 1.05205 1.22000 1.05670 0.93110 0.91584 1.20829 1.09630 0.97523 0.95166 1.21409 1.03667 0.96012 0.95685 1.20101 1.15060 0.93289 0.87930 1.17009 0.78023 0.84133 0.83513 1.90773 1.44490 1.22983 1.85164 1.45721 1.66549 1.18011 1.06053 1.21482 1.01283 0.97491 0.78572 1.22762 0.98758 0.97809 0.94939 1.23892 0.93928 1.01125 1.01833 1.21038 0.93814 0.85263 0.93786 1.42522 1.27078 1.03180 1.64230 1.19111 1.01702 0.91637 1.25211 0.89027 1.24682 0.97920 0.96405 1.00034 1.69696 1.34670 1.09427 1.44130 0.86561 0.83277 0.79858 0.78862 1.21024 1.21654 1.20362 1.23457 1.00451 1.00898 0.93966 0.92479 0.90787 0.91256 0.89500 0.87859 0.81620 0.84035 0.83830 0.76073 0.91620 0.91339 0.89150 0.90947 0.91248 0.91037 0.80512 0.92971 0.91387 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 10.17 37.16 0.38 -0.95 16 2 C 0.10 0.84 6.10 -4.04 -0.02 0.82 16 3 N -0.41 -4.26 2.76 -112.88 -0.31 -4.57 16 4 C 0.01 0.10 11.37 -16.91 -0.19 -0.09 16 5 C -0.21 -1.96 10.81 -39.98 -0.43 -2.40 16 6 C -0.14 -1.52 10.35 -39.12 -0.41 -1.92 16 7 C -0.05 -0.61 6.88 -81.99 -0.56 -1.17 16 8 C 0.59 7.88 7.77 -12.85 -0.10 7.78 16 9 O -0.55 -8.63 14.27 5.19 0.07 -8.56 16 10 N -0.71 -8.67 5.54 -61.62 -0.34 -9.01 16 11 C 0.13 1.69 5.50 -4.04 -0.02 1.67 16 12 C -0.12 -1.70 3.62 -89.80 -0.33 -2.03 16 13 C -0.17 -2.60 7.44 -25.83 -0.19 -2.79 16 14 C 0.17 3.16 4.57 -67.03 -0.31 2.86 16 15 N -0.73 -16.70 5.11 -52.55 -0.27 -16.97 16 16 C -0.25 -6.83 10.45 -15.06 -0.16 -6.98 16 17 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 18 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -28.93 13.97 55.49 0.78 -28.16 16 20 Si 0.88 21.69 27.74 -169.99 -4.71 16.97 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 24 C -0.15 -2.16 7.39 -25.92 -0.19 -2.36 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.75 7.60 -51.93 -0.39 0.36 16 28 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.10 1.07 6.73 -51.93 -0.35 0.72 16 30 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 32 H 0.14 1.32 7.45 -52.48 -0.39 0.93 16 33 H 0.40 4.34 7.37 -40.82 -0.30 4.04 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.88 7.88 -51.93 -0.41 0.47 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 40 H 0.36 8.11 5.76 -40.82 -0.24 7.88 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -32.87 354.43 -8.81 -41.67 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -6.73 Total: 10.77 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -2.63 Total: -7.50 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.15 Total: -58.70 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.07 Total: -8.56 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.87 -8.81 -41.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091366303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.587 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds