Wall clock time and date at job start Tue Mar 31 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47168 * 2 1 4 4 C 1.35534 * 125.67653 * 265.45287 * 3 2 1 5 5 C 1.35450 * 108.87078 * 180.12895 * 4 3 2 6 6 C 1.39830 * 107.86370 * 359.62638 * 5 4 3 7 7 C 1.37646 * 125.67833 * 85.16490 * 3 2 1 8 8 C 1.46671 * 126.23632 * 0.03785 * 7 3 2 9 9 O 1.21697 * 119.99956 * 354.68450 * 8 7 3 10 10 N 1.34781 * 120.00446 * 174.68518 * 8 7 3 11 11 C 1.46503 * 120.00266 * 185.01450 * 10 8 7 12 12 C 1.53000 * 109.46823 * 180.02562 * 11 10 8 13 13 C 1.53785 * 113.61508 * 274.13459 * 12 11 10 14 14 C 1.53952 * 87.01667 * 220.05262 * 13 12 11 15 15 N 1.46498 * 113.53697 * 270.80860 * 14 13 12 16 16 C 1.36939 * 120.00318 * 252.49925 * 15 14 13 17 17 H 1.08005 * 119.99693 * 0.02562 * 16 15 14 18 18 C 1.38806 * 120.00408 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00442 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99884 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47200 * 90.00007 * 20 18 16 22 22 H 1.48497 * 109.47174 * 210.00026 * 20 18 16 23 23 H 1.48506 * 109.46887 * 330.00136 * 20 18 16 24 24 C 1.53780 * 87.11573 * 25.36437 * 14 13 12 25 25 H 1.09002 * 109.46984 * 60.00131 * 1 2 3 26 26 H 1.09002 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46677 * 300.00187 * 1 2 3 28 28 H 1.09000 * 109.47328 * 239.99501 * 2 1 3 29 29 H 1.09002 * 109.46984 * 119.99869 * 2 1 3 30 30 H 1.07998 * 125.56280 * 359.97438 * 4 3 2 31 31 H 1.08005 * 126.06330 * 179.89392 * 5 4 3 32 32 H 1.08007 * 126.45296 * 180.20963 * 6 5 4 33 33 H 0.97005 * 119.99747 * 5.01363 * 10 8 7 34 34 H 1.08994 * 109.46887 * 300.00024 * 11 10 8 35 35 H 1.08997 * 109.46658 * 59.99981 * 11 10 8 36 36 H 1.08993 * 112.84808 * 45.33448 * 12 11 10 37 37 H 1.09006 * 113.60845 * 334.57277 * 13 12 11 38 38 H 1.09000 * 113.61036 * 105.47107 * 13 12 11 39 39 H 1.09001 * 113.73818 * 139.94886 * 14 13 12 40 40 H 0.97006 * 119.99903 * 72.49647 * 15 14 13 41 41 H 0.97000 * 120.00199 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.61150 * 220.09283 * 24 14 13 43 43 H 1.08992 * 113.61601 * 89.18839 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3641 2.0973 -1.0975 5 6 2.7698 3.3292 -0.7069 6 6 2.6675 3.3928 0.6862 7 6 2.1971 2.1695 1.1141 8 6 1.9353 1.7791 2.5035 9 8 1.4287 0.6998 2.7471 10 7 2.2557 2.6157 3.5105 11 6 2.0966 2.1831 4.9011 12 6 2.5271 3.3127 5.8390 13 6 4.0367 3.3285 6.1320 14 6 3.6692 3.6788 7.5854 15 7 3.5565 5.1189 7.8295 16 6 4.5210 5.7684 8.5528 17 1 5.3651 5.2190 8.9429 18 6 4.4145 7.1330 8.7836 19 7 5.3412 7.7571 9.4792 20 14 2.9549 8.0833 8.1082 21 1 1.8567 8.0803 9.1079 22 1 3.3633 9.4828 7.8258 23 1 2.4844 7.4423 6.8540 24 6 2.3186 2.9899 7.3280 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.3252 1.7427 -2.1169 31 1 3.1078 4.1230 -1.3566 32 1 2.9115 4.2404 1.3096 33 1 2.5917 3.5044 3.3144 34 1 1.0516 1.9352 5.0871 35 1 2.7161 1.3046 5.0813 36 1 2.1296 4.2833 5.5428 37 1 4.5124 2.3536 6.0247 38 1 4.5739 4.1222 5.6130 39 1 4.2841 3.1705 8.3282 40 1 2.7986 5.6124 7.4788 41 1 5.2669 8.7108 9.6402 42 1 1.4710 3.5109 7.7732 43 1 2.3239 1.9225 7.5484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091366303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:16 Heat of formation + Delta-G solvation = 20.667050 kcal Electronic energy + Delta-G solvation = -22704.803126 eV Core-core repulsion = 19364.836107 eV Total energy + Delta-G solvation = -3339.967019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.35827 -40.59058 -39.61186 -36.17916 -35.29168 -34.67618 -32.69146 -30.77596 -30.23727 -28.41844 -26.45900 -25.46543 -24.53198 -23.67873 -22.84561 -21.42193 -20.73816 -19.94410 -19.54609 -18.78916 -17.12216 -16.92056 -16.61717 -16.44695 -16.12677 -15.65774 -15.46999 -15.21128 -14.91764 -14.66325 -14.62439 -14.54963 -14.05820 -13.46676 -13.36310 -13.22895 -13.13216 -13.07617 -13.01442 -12.86130 -12.68700 -12.19104 -12.13681 -11.87796 -11.64018 -11.56663 -11.10422 -10.95870 -10.81161 -10.14442 -9.69726 -9.29261 -9.15386 -8.02230 -5.35918 0.48160 1.38124 1.42086 1.49179 1.69036 1.83406 2.36406 2.41460 2.48653 3.28048 3.51794 3.68514 3.74586 3.80985 3.91195 4.00361 4.10888 4.16719 4.27404 4.36918 4.37140 4.44504 4.48078 4.69011 4.73684 4.78142 4.85927 4.93186 4.96834 5.08511 5.15266 5.17627 5.26017 5.29122 5.32549 5.47401 5.54452 5.81161 5.82914 6.03132 6.23185 6.34750 6.51395 7.08368 7.15156 7.85229 8.03763 9.19302 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.003043 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.151147 B = 9199.547282 C = 9850.539623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.095 3.905 3 N -0.415 5.415 4 C 0.024 3.976 5 C -0.223 4.223 6 C -0.144 4.144 7 C -0.086 4.086 8 C 0.582 3.418 9 O -0.583 6.583 10 N -0.709 5.709 11 C 0.144 3.856 12 C -0.106 4.106 13 C -0.155 4.155 14 C 0.146 3.854 15 N -0.734 5.734 16 C -0.232 4.232 17 H 0.056 0.944 18 C -0.065 4.065 19 N -0.985 5.985 20 Si 0.956 3.044 21 H -0.279 1.279 22 H -0.297 1.297 23 H -0.249 1.249 24 C -0.132 4.132 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.036 0.964 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.203 0.797 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.411 0.589 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.367 0.633 41 H 0.258 0.742 42 H 0.068 0.932 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.176 -15.164 -24.237 30.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.025 4.025 3 N -0.088 5.088 4 C -0.111 4.111 5 C -0.246 4.246 6 C -0.171 4.171 7 C -0.199 4.199 8 C 0.371 3.629 9 O -0.465 6.465 10 N -0.360 5.360 11 C 0.020 3.980 12 C -0.125 4.125 13 C -0.196 4.196 14 C 0.036 3.964 15 N -0.376 5.376 16 C -0.363 4.363 17 H 0.074 0.926 18 C -0.257 4.257 19 N -0.635 5.635 20 Si 0.783 3.217 21 H -0.206 1.206 22 H -0.223 1.223 23 H -0.173 1.173 24 C -0.171 4.171 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.055 0.945 28 H 0.139 0.861 29 H 0.099 0.901 30 H 0.220 0.780 31 H 0.179 0.821 32 H 0.170 0.830 33 H 0.247 0.753 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.200 0.800 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.459 -16.285 -23.853 30.717 hybrid contribution -0.217 1.489 0.119 1.510 sum -10.676 -14.796 -23.734 29.937 Atomic orbital electron populations 1.22006 0.93804 1.03717 1.01771 1.22115 0.96206 0.79038 1.05185 1.44300 1.47140 1.12178 1.05199 1.22656 1.03295 0.92611 0.92581 1.21174 1.10044 0.98598 0.94820 1.21688 1.02843 0.95800 0.96731 1.20063 1.17565 0.94473 0.87802 1.17272 0.77505 0.83764 0.84346 1.90750 1.45948 1.24156 1.85676 1.45661 1.66323 1.18246 1.05743 1.21328 1.01279 0.96784 0.78570 1.22579 0.96902 0.98186 0.94786 1.23745 0.95423 1.01409 0.99003 1.21377 0.96753 0.83133 0.95107 1.42446 1.26155 1.04967 1.63991 1.19066 1.01324 0.91688 1.24221 0.92555 1.25521 1.01315 0.97617 1.01212 1.69885 1.37394 1.09596 1.46625 0.85405 0.79328 0.77733 0.79272 1.20555 1.22337 1.17315 1.23354 0.97697 1.01905 0.94145 0.91371 0.89203 0.94487 0.86144 0.90079 0.78023 0.82140 0.82987 0.75279 0.91490 0.91330 0.89305 0.89114 0.92887 0.92346 0.79964 0.93336 0.91317 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 10.17 71.98 0.73 -1.60 16 2 C 0.09 1.48 6.10 86.38 0.53 2.00 16 3 N -0.41 -7.89 2.76 -511.03 -1.41 -9.30 16 4 C 0.02 0.35 11.37 83.48 0.95 1.30 16 5 C -0.22 -3.65 10.81 22.01 0.24 -3.41 16 6 C -0.14 -2.87 10.35 22.57 0.23 -2.63 16 7 C -0.09 -2.00 6.88 40.35 0.28 -1.72 16 8 C 0.58 15.33 7.77 86.44 0.67 16.00 16 9 O -0.58 -18.12 14.27 -4.34 -0.06 -18.18 16 10 N -0.71 -16.34 5.54 -467.08 -2.59 -18.93 16 11 C 0.14 3.33 5.50 86.38 0.48 3.81 16 12 C -0.11 -2.67 3.62 -10.26 -0.04 -2.71 16 13 C -0.16 -4.62 7.44 31.18 0.23 -4.39 16 14 C 0.15 5.22 4.57 45.58 0.21 5.43 16 15 N -0.73 -33.17 5.11 -320.17 -1.64 -34.80 16 16 C -0.23 -13.09 10.45 84.03 0.88 -12.21 16 17 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 18 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 19 N -0.98 -63.02 13.97 21.65 0.30 -62.72 16 20 Si 0.96 44.81 27.74 68.60 1.90 46.71 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 23 H -0.25 -10.34 6.52 99.48 0.65 -9.69 16 24 C -0.13 -3.54 7.39 31.12 0.23 -3.31 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.04 0.79 7.60 -2.39 -0.02 0.78 16 28 H 0.12 1.02 8.12 -2.39 -0.02 1.00 16 29 H 0.08 1.64 6.73 -2.39 -0.02 1.63 16 30 H 0.20 1.28 8.06 -2.91 -0.02 1.25 16 31 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.15 2.57 7.45 -2.91 -0.02 2.55 16 33 H 0.41 8.24 7.37 -92.70 -0.68 7.56 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.62 7.88 -2.39 -0.02 1.61 16 36 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.09 2.38 7.92 -2.38 -0.02 2.36 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 40 H 0.37 15.77 5.76 -92.70 -0.53 15.23 16 41 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.11 2.39 8.10 -2.39 -0.02 2.37 16 Total: -1.00 -73.44 354.43 2.33 -71.12 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.26 Total: 32.90 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 6.08 Total: -6.79 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -5.33 Total: -125.75 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.06 Total: -18.18 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.71 kcal Total: -73.44 2.33 -71.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091366303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.783 kcal (2) G-P(sol) polarization free energy of solvation -73.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds