Wall clock time and date at job start Tue Mar 31 2020 06:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47641 * 2 1 4 4 C 1.46503 * 119.99484 * 269.99936 * 3 2 1 5 5 C 1.53002 * 109.47157 * 269.99623 * 4 3 2 6 6 C 1.34774 * 120.00147 * 89.99793 * 3 2 1 7 7 O 1.21278 * 119.99815 * 180.02562 * 6 3 2 8 8 C 1.50701 * 119.99927 * 359.97438 * 6 3 2 9 9 N 1.46503 * 109.46783 * 179.97438 * 8 6 3 10 10 C 1.46501 * 120.00081 * 270.00101 * 9 8 6 11 11 C 1.38819 * 119.99717 * 90.00679 * 9 8 6 12 12 C 1.39798 * 119.58821 * 356.84586 * 11 9 8 13 13 C 1.38592 * 119.49525 * 179.97438 * 12 11 9 14 14 C 1.38396 * 118.68020 * 359.73028 * 13 12 11 15 15 C 1.40551 * 119.14502 * 0.53590 * 14 13 12 16 16 C 1.41312 * 119.78272 * 179.73151 * 15 14 13 17 17 H 1.08006 * 120.00061 * 359.94429 * 16 15 14 18 18 C 1.40024 * 120.00175 * 179.97438 * 16 15 14 19 19 N 1.30747 * 120.00263 * 192.18525 * 18 16 15 20 20 Si 1.86800 * 119.99915 * 11.91165 * 18 16 15 21 21 H 1.48501 * 109.47115 * 174.69992 * 20 18 16 22 22 H 1.48497 * 109.47100 * 294.70197 * 20 18 16 23 23 H 1.48503 * 109.47321 * 54.70067 * 20 18 16 24 24 N 1.31958 * 119.58654 * 176.82828 * 11 9 8 25 25 H 1.08995 * 109.46490 * 59.99918 * 1 2 3 26 26 H 1.08995 * 109.47536 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47082 * 300.00439 * 1 2 3 28 28 H 1.09001 * 109.47082 * 239.99561 * 2 1 3 29 29 H 1.09007 * 109.46796 * 119.99893 * 2 1 3 30 30 H 1.08998 * 109.47253 * 29.99765 * 4 3 2 31 31 H 1.09005 * 109.46876 * 149.99909 * 4 3 2 32 32 H 1.09002 * 109.46989 * 300.00671 * 5 4 3 33 33 H 1.08996 * 109.46836 * 60.00189 * 5 4 3 34 34 H 1.08993 * 109.47137 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.46611 * 60.00712 * 8 6 3 36 36 H 1.08997 * 109.47641 * 300.00254 * 8 6 3 37 37 H 1.09002 * 109.46848 * 264.76997 * 10 9 8 38 38 H 1.09001 * 109.47169 * 24.77115 * 10 9 8 39 39 H 1.09001 * 109.46642 * 144.77155 * 10 9 8 40 40 H 1.08007 * 120.25025 * 359.95975 * 12 11 9 41 41 H 1.08001 * 120.66188 * 180.02562 * 13 12 11 42 42 H 1.08000 * 120.42148 * 180.28254 * 14 13 12 43 43 H 0.97001 * 119.99625 * 354.57699 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2627 2.0716 -1.2688 5 6 3.7077 1.8311 -1.7105 6 6 2.2431 2.0165 1.1672 7 8 2.6470 3.1601 1.1671 8 6 1.9913 1.3063 2.4723 9 7 2.3094 2.2037 3.5858 10 6 3.6642 2.2285 4.1425 11 6 1.3269 3.0305 4.1133 12 6 0.0551 3.0483 3.5332 13 6 -0.9245 3.8740 4.0618 14 6 -0.6120 4.6570 5.1593 15 6 0.6865 4.5989 5.6942 16 6 1.0219 5.3968 6.8112 17 1 0.2817 6.0492 7.2506 18 6 2.3140 5.3422 7.3480 19 7 2.5626 5.8871 8.5103 20 14 3.6808 4.4842 6.4072 21 1 4.9687 4.6751 7.1214 22 1 3.3792 3.0335 6.3093 23 1 3.7810 5.0621 5.0429 24 7 1.6051 3.7895 5.1563 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.5819 1.6875 -2.0284 31 1 2.0958 3.1409 -1.1385 32 1 4.3885 2.2152 -0.9508 33 1 3.8746 0.7619 -1.8407 34 1 3.8895 2.3452 -2.6542 35 1 2.6212 0.4186 2.5302 36 1 0.9432 1.0126 2.5299 37 1 3.7138 1.5669 5.0074 38 1 4.3739 1.8922 3.3866 39 1 3.9130 3.2449 4.4479 40 1 -0.1623 2.4235 2.6794 41 1 -1.9135 3.9024 3.6287 42 1 -1.3552 5.3072 5.5967 43 1 1.8734 6.3966 8.9644 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116285097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:29 Heat of formation + Delta-G solvation = 6.509700 kcal Electronic energy + Delta-G solvation = -24133.377402 eV Core-core repulsion = 20792.796474 eV Total energy + Delta-G solvation = -3340.580928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.09408 -38.66419 -36.34964 -35.52001 -33.50873 -32.44714 -31.14842 -29.99404 -29.52845 -28.23850 -25.74203 -24.52796 -23.75863 -23.01797 -21.24965 -20.31037 -18.84334 -18.23708 -17.23490 -16.99851 -16.26451 -15.44032 -15.06996 -14.48772 -14.33482 -14.11172 -13.92381 -13.85859 -13.65935 -13.35439 -13.11829 -12.79556 -12.69710 -12.26158 -12.21682 -12.15485 -11.90805 -11.81419 -11.65475 -11.38081 -11.25268 -11.13280 -10.74174 -10.51832 -9.84780 -9.73470 -9.56244 -9.13375 -8.84454 -8.75403 -8.37777 -7.56491 -7.13997 -6.73599 -4.69393 2.71401 2.78128 2.79544 3.00137 3.57767 3.68055 3.75333 4.06795 4.49600 4.51689 4.66374 4.76345 4.88488 4.99437 5.03379 5.13699 5.24101 5.27272 5.34557 5.42964 5.54338 5.60466 5.61650 5.69845 5.82770 5.94786 5.95564 6.04068 6.17053 6.26613 6.39719 6.44985 6.49908 6.68202 6.71455 7.21803 7.36223 7.51051 7.54130 7.67638 7.72137 8.06554 8.24136 8.34749 8.53795 8.78951 9.67229 10.07814 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022380 B = 0.004965 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.840745 B = 5637.631169 C = 6277.843810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.105 3.895 3 N -0.621 5.621 4 C 0.111 3.889 5 C -0.166 4.166 6 C 0.489 3.511 7 O -0.513 6.513 8 C 0.120 3.880 9 N -0.605 5.605 10 C 0.101 3.899 11 C 0.450 3.550 12 C -0.363 4.363 13 C -0.015 4.015 14 C -0.307 4.307 15 C 0.287 3.713 16 C -0.476 4.476 17 H 0.081 0.919 18 C 0.044 3.956 19 N -0.806 5.806 20 Si 1.151 2.849 21 H -0.337 1.337 22 H -0.269 1.269 23 H -0.293 1.293 24 N -0.614 5.614 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 -13.886 -16.916 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.018 4.018 3 N -0.358 5.358 4 C -0.011 4.011 5 C -0.224 4.224 6 C 0.274 3.726 7 O -0.386 6.386 8 C -0.009 4.009 9 N -0.321 5.321 10 C -0.042 4.042 11 C 0.214 3.786 12 C -0.388 4.388 13 C -0.039 4.039 14 C -0.329 4.329 15 C 0.163 3.837 16 C -0.508 4.508 17 H 0.099 0.901 18 C -0.177 4.177 19 N -0.428 5.428 20 Si 0.987 3.013 21 H -0.271 1.271 22 H -0.196 1.196 23 H -0.222 1.222 24 N -0.342 5.342 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.155 -13.677 -16.340 21.418 hybrid contribution -2.763 0.599 -0.598 2.890 sum -0.609 -13.078 -16.939 21.409 Atomic orbital electron populations 1.22249 0.95788 1.02333 1.02955 1.21550 0.94570 0.82556 1.03136 1.48178 1.67355 1.14315 1.05981 1.21344 0.96180 0.98854 0.84757 1.22114 0.97303 1.01454 1.01521 1.21849 0.77377 0.87474 0.85852 1.90734 1.43545 1.17431 1.86870 1.21213 1.03523 0.92210 0.83941 1.45577 1.09444 1.42995 1.34044 1.21963 0.82023 1.03110 0.97081 1.17926 0.85745 0.86806 0.88126 1.20363 0.94768 1.14577 1.09106 1.20655 0.96499 0.92963 0.93806 1.21375 0.98487 1.09560 1.03498 1.18243 0.87518 0.87713 0.90187 1.20730 0.99055 1.20690 1.10323 0.90080 1.27867 1.01772 0.94039 0.93983 1.70673 1.38959 1.22491 1.10676 0.82352 0.69373 0.77755 0.71831 1.27091 1.19626 1.22205 1.65929 1.35464 1.16741 1.16074 0.92312 0.91408 0.91949 0.90421 0.90288 0.90981 0.90007 0.92214 0.92817 0.91851 0.88490 0.87651 0.93158 0.93130 0.90940 0.88771 0.88275 0.88176 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.24 37.16 0.38 -0.89 16 2 C 0.11 0.78 5.93 -4.04 -0.02 0.76 16 3 N -0.62 -7.04 2.47 -173.68 -0.43 -7.47 16 4 C 0.11 1.16 6.13 -4.04 -0.02 1.13 16 5 C -0.17 -1.54 10.24 37.16 0.38 -1.16 16 6 C 0.49 7.63 7.74 -10.99 -0.08 7.55 16 7 O -0.51 -10.66 16.01 5.56 0.09 -10.57 16 8 C 0.12 1.76 4.07 -5.19 -0.02 1.74 16 9 N -0.61 -12.18 2.47 -183.07 -0.45 -12.63 16 10 C 0.10 1.94 9.01 59.85 0.54 2.48 16 11 C 0.45 10.78 7.38 -155.32 -1.15 9.64 16 12 C -0.36 -8.05 9.22 -38.87 -0.36 -8.41 16 13 C -0.02 -0.34 10.15 -39.39 -0.40 -0.74 16 14 C -0.31 -7.69 9.83 -38.65 -0.38 -8.07 16 15 C 0.29 7.95 6.41 -85.00 -0.54 7.41 16 16 C -0.48 -13.64 9.54 -37.74 -0.36 -14.00 16 17 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16 18 C 0.04 1.26 5.52 -17.34 -0.10 1.17 16 19 N -0.81 -22.83 13.65 55.55 0.76 -22.07 16 20 Si 1.15 29.62 22.42 -169.99 -3.81 25.81 16 21 H -0.34 -8.52 7.11 56.52 0.40 -8.12 16 22 H -0.27 -6.59 4.72 56.52 0.27 -6.33 16 23 H -0.29 -7.84 6.71 56.52 0.38 -7.46 16 24 N -0.61 -16.51 4.19 -10.33 -0.04 -16.56 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.56 7.22 -51.93 -0.37 0.19 16 28 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 29 H 0.08 0.50 6.44 -51.92 -0.33 0.17 16 30 H 0.07 0.56 8.07 -51.93 -0.42 0.15 16 31 H 0.08 1.06 7.42 -51.93 -0.39 0.67 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 1.06 7.33 -51.93 -0.38 0.68 16 36 H 0.11 1.42 5.33 -51.93 -0.28 1.14 16 37 H 0.05 0.91 7.44 -51.93 -0.39 0.52 16 38 H 0.05 0.80 8.03 -51.93 -0.42 0.38 16 39 H 0.07 1.61 3.54 -51.93 -0.18 1.43 16 40 H 0.09 1.82 6.19 -52.48 -0.32 1.49 16 41 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 43 H 0.28 7.61 8.73 -40.82 -0.36 7.26 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -34.49 339.83 -7.50 -41.99 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.59 Total: -2.23 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.14 Total: -1.40 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.17 Total: -58.72 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 29.62 SS G_CDS: -3.81 Total: 25.81 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.49 -7.50 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116285097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.502 kcal (2) G-P(sol) polarization free energy of solvation -34.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds